Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001789

Physical Location & Seq

Genomic Coordinates Forward (+)

24972360 .. 24972844

Gene Structure 485 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002066

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGTCCTGGGGGAAGGGGTAATTCTTGCATTGGTGTCGATGTCTGTTAATGGAACATCAAGAGGAAAAGAGAAAGCTCATAAGCTGTTAGTGCTGTTTCATGAGCAGAGAGACAAAGAGACCAATCACCTCCGGAGGAGAAGGTGCAAATCTGCAAACAAAATGACAACAATCCCATACGCGCTCCAGAATCAAAGCCGCTATGCAAATCCATCTCAAGAAGAAAGATGGGCAAAGCTTTTAGCTTCTTATGGAAGAGCAAAAGCTATTCTGTTTACCAGTGTTGAGTCCCACGGTGCTAGCAGAATGTACAGGCCCCCTATAATCTATGGATTTTGGTTTTGCACTTATCTTTTGGCTAGGAATACACGTATTAAGAAGTATCATAATCCAAGTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0033612 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0070647 GO:0070696 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KAP U-box

Protein Analysis

134

Amino Acids

15.31

Weight (kDa)

10.36

Isoelectric Point (pI)

60.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001789)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24330 AT1G24330 AT1G27910 AT1G67530 AT1G67530 AT1G67530 AT1G67530
fragaria_vesca	FvH4_4g24030 FvH4_4g24030 FvH4_4g24030
malus_domestica	MD16G1116600.v1.1
prunus_persica	Prupe.1G229500_v2.0.a1 Prupe.1G229500_v2.0.a1 Prupe.1G229500_v2.0.a1 Prupe.1G229500_v2.0.a1 Prupe.1G229500_v2.0.a1
pyrus_communis	pycom13g10100 pycom16g09990
rosa_chinensis	RchiOBHm_Chr4g0430741 RchiOBHm_Chr7g0222371 RchiOBHm_Chr7g0222381
rosa_laevigata	RLG00000002065 RLG00000002066 RLG00000006953
rosa_multiflora	Rmu_co8254499.1_g000001 Rmu_sc0008769.1_g000015 Rmu_sc0030350.1_g000001 Rmu_sc0034402.1_g000003
rosa_roxburghii	Rroxscaffold_3G00237030 Rroxscaffold_5G00372450
rosa_rugosa	Rorug04G0245300 Rorug04G0245300 Rorug04G0245400 Rorug04G0245500 Rorug07G0207800
rosa_samantha	Rh4AG301500 Rh4BG309400 Rh4CG326100 Rh4DG306400 Rh7AG350300 Rh7BG340600 Rh7BG340700 Rh7CG367800 Rh7DG346500 Rh7DG346600
rosa_wichuraiana	Rw4G026200 Rw7G029570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	182
AccIII	TCCGGA	1 cut(s)	132
AciI	CCGC	1 cut(s)	199
AfaI	GTAC	1 cut(s)	311
AflIII	ACRYGT	1 cut(s)	368
AjnI	CCWGG	1 cut(s)	6
AluBI	AGCT	5 cut(s)	77, 85, 238, 245, 266
AluI	AGCT	5 cut(s)	77, 85, 238, 245, 266
Alw26I	GTCTC	2 cut(s)	105, 113
Aor13HI	TCCGGA	1 cut(s)	132
AoxI	GGCC	1 cut(s)	314
AspLEI	GCGC	1 cut(s)	184
AspS9I	GGNCC	2 cut(s)	4, 315
AsuHPI	GGTGA	1 cut(s)	119
AsuNHI	GCTAGC	1 cut(s)	299
AvaII	GGWCC	1 cut(s)	4
BccI	CCATC	2 cut(s)	220, 222
BcgI	CGANNNNNNTGC	2 cut(s)	18, 52
BciT130I	CCWGG	1 cut(s)	8
BcoDI	GTCTC	2 cut(s)	105, 113
BfaI	CTAG	2 cut(s)	300, 360
BisI	GCNGC	1 cut(s)	199
BlsI	GCNGC	1 cut(s)	200
Bme1390I	CCNGG	1 cut(s)	8
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	2 cut(s)	4, 315
BmiI	GGNNCC	1 cut(s)	317
BmrFI	CCNGG	1 cut(s)	8
BmtI	GCTAGC	1 cut(s)	303
BpmI	CTGGAG	1 cut(s)	170
BpuEI	CTTGAG	1 cut(s)	201
BsaAI	YACGTR	1 cut(s)	371
BsaI	GGTCTC	1 cut(s)	113
BsaJI	CCNNGG	2 cut(s)	7, 292
BsaWI	WCCGGW	1 cut(s)	132
Bse1I	ACTGG	1 cut(s)	279
BseAI	TCCGGA	1 cut(s)	132
BseBI	CCWGG	1 cut(s)	8
BseDI	CCNNGG	2 cut(s)	7, 292
BseNI	ACTGG	1 cut(s)	279
BseRI	GAGGAG	1 cut(s)	151
Bsh1236I	CGCG	1 cut(s)	182
BshFI	GGCC	1 cut(s)	316
BsiSI	CCGG	1 cut(s)	133
BslFI	GGGAC	1 cut(s)	274
BsmAI	GTCTC	2 cut(s)	105, 113
BsmFI	GGGAC	1 cut(s)	274
BsnI	GGCC	1 cut(s)	316
Bso31I	GGTCTC	1 cut(s)	113
Bsp13I	TCCGGA	1 cut(s)	132
Bsp1407I	TGTACA	1 cut(s)	309
BspACI	CCGC	1 cut(s)	199
BspANI	GGCC	1 cut(s)	316
BspEI	TCCGGA	1 cut(s)	132
BspFNI	CGCG	1 cut(s)	182
BspHI	TCATGA	1 cut(s)	100
BspLI	GGNNCC	1 cut(s)	317
BspOI	GCTAGC	1 cut(s)	303
BspQI	GCTCTTC	1 cut(s)	250
BspTNI	GGTCTC	1 cut(s)	113
BsrGI	TGTACA	1 cut(s)	309
BsrI	ACTGG	1 cut(s)	279
BssECI	CCNNGG	2 cut(s)	7, 292
Bst2UI	CCWGG	1 cut(s)	8
Bst4CI	ACNGT	1 cut(s)	296
Bst6I	CTCTTC	1 cut(s)	250
BstAUI	TGTACA	1 cut(s)	309
BstBAI	YACGTR	1 cut(s)	371
BstC8I	GCNNGC	1 cut(s)	301
BstDSI	CCRYGG	1 cut(s)	292
BstFNI	CGCG	1 cut(s)	182
BstHHI	GCGC	1 cut(s)	184
BstMAI	GTCTC	2 cut(s)	105, 113
BstMWI	GCNNNNNNNGC	1 cut(s)	91
BstNI	CCWGG	1 cut(s)	8
BstSCI	CCNGG	1 cut(s)	6
BstUI	CGCG	1 cut(s)	182
BsuRI	GGCC	1 cut(s)	316
BtgI	CCRYGG	1 cut(s)	292
BtsIMutI	CAGTG	1 cut(s)	286
Cac8I	GCNNGC	1 cut(s)	301
CciI	TCATGA	1 cut(s)	100
CfoI	GCGC	1 cut(s)	184
Cfr13I	GGNCC	2 cut(s)	4, 315
Csp6I	GTAC	1 cut(s)	310
CviAII	CATG	1 cut(s)	101
CviJI	RGCY	8 cut(s)	77, 85, 198, 238, 245, 266, 316, 359
CviKI_1	RGCY	8 cut(s)	77, 85, 198, 238, 245, 266, 316, 359
CviQI	GTAC	1 cut(s)	310
Eam1104I	CTCTTC	1 cut(s)	250
EarI	CTCTTC	1 cut(s)	250
Eco31I	GGTCTC	1 cut(s)	113
Eco47I	GGWCC	1 cut(s)	4
EcoO109I	RGGNCCY	1 cut(s)	315
EcoRII	CCWGG	1 cut(s)	6
FaeI	CATG	1 cut(s)	104
FaiI	YATR	8 cut(s)	81, 102, 178, 204, 252, 323, 330, 387
FaqI	GGGAC	1 cut(s)	274
FatI	CATG	1 cut(s)	100
Fnu4HI	GCNGC	1 cut(s)	199
Fsp4HI	GCNGC	1 cut(s)	199
FspBI	CTAG	2 cut(s)	300, 360
GlaI	GCGC	1 cut(s)	183
GluI	GCNGC	1 cut(s)	199
GsuI	CTGGAG	1 cut(s)	170
HaeIII	GGCC	1 cut(s)	316
HapII	CCGG	1 cut(s)	133
HhaI	GCGC	1 cut(s)	184
Hin1II	CATG	1 cut(s)	104
Hin6I	GCGC	1 cut(s)	182
HinP1I	GCGC	1 cut(s)	182
HindIII	AAGCTT	1 cut(s)	236
HinfI	GANTC	2 cut(s)	190, 287
HpaII	CCGG	1 cut(s)	133
HphI	GGTGA	1 cut(s)	119
Hpy166II	GTNNAC	1 cut(s)	276
Hpy188III	TCNNGA	5 cut(s)	60, 101, 133, 187, 218
Hpy8I	GTNNAC	1 cut(s)	276
HpyAV	CCTTC	2 cut(s)	8, 135
HpyCH4III	ACNGT	1 cut(s)	296
HpyCH4IV	ACGT	1 cut(s)	370
HpyCH4V	TGCA	5 cut(s)	29, 147, 155, 206, 345
HpyF10VI	GCNNNNNNNGC	1 cut(s)	91
HpySE526I	ACGT	1 cut(s)	370
Hsp92II	CATG	1 cut(s)	104
HspAI	GCGC	1 cut(s)	182
Kpn2I	TCCGGA	1 cut(s)	132
LguI	GCTCTTC	1 cut(s)	250
LmnI	GCTCC	1 cut(s)	189
LpnPI	CCDG	5 cut(s)	20, 146, 200, 292, 298
MaeI	CTAG	2 cut(s)	300, 360
MaeII	ACGT	1 cut(s)	370
MboII	GAAGA	2 cut(s)	233, 267
MluCI	AATT	1 cut(s)	21
MlyI	GAGTC	1 cut(s)	296
MnlI	CCTC	3 cut(s)	56, 129, 140
MroI	TCCGGA	1 cut(s)	132
MseI	TTAA	2 cut(s)	48, 375
MspI	CCGG	1 cut(s)	133
MspR9I	CCNGG	1 cut(s)	8
MvaI	CCWGG	1 cut(s)	8
MvnI	CGCG	1 cut(s)	182
MwoI	GCNNNNNNNGC	1 cut(s)	91
NheI	GCTAGC	1 cut(s)	299
NlaIII	CATG	1 cut(s)	104
NlaIV	GGNNCC	1 cut(s)	317
PagI	TCATGA	1 cut(s)	100
PciSI	GCTCTTC	1 cut(s)	250
PfeI	GAWTC	1 cut(s)	190
PkrI	GCNGC	1 cut(s)	200
PleI	GAGTC	1 cut(s)	295
PpsI	GAGTC	1 cut(s)	295
Ppu21I	YACGTR	1 cut(s)	371
Psp6I	CCWGG	1 cut(s)	6
PspGI	CCWGG	1 cut(s)	6
PspN4I	GGNNCC	1 cut(s)	317
PspPI	GGNCC	2 cut(s)	4, 315
RsaI	GTAC	1 cut(s)	311
RsaNI	GTAC	1 cut(s)	310
SapI	GCTCTTC	1 cut(s)	250
SaqAI	TTAA	2 cut(s)	48, 375
SatI	GCNGC	1 cut(s)	199
Sau96I	GGNCC	2 cut(s)	4, 315
SchI	GAGTC	1 cut(s)	296
ScrFI	CCNGG	1 cut(s)	8
SetI	ASST	8 cut(s)	79, 87, 132, 146, 240, 247, 268, 373
SinI	GGWCC	1 cut(s)	4
SmlI	CTYRAG	1 cut(s)	216
SmoI	CTYRAG	1 cut(s)	216
Sse9I	AATT	1 cut(s)	21
SsiI	CCGC	1 cut(s)	199
SspMI	CTAG	2 cut(s)	300, 360
StyD4I	CCNGG	1 cut(s)	6
TaaI	ACNGT	1 cut(s)	296
TaiI	ACGT	1 cut(s)	373
TaqI	TCGA	1 cut(s)	38
TasI	AATT	1 cut(s)	21
TatI	WGTACW	1 cut(s)	309
TauI	GCSGC	1 cut(s)	201
TfiI	GAWTC	1 cut(s)	190
Tru1I	TTAA	2 cut(s)	48, 375
Tru9I	TTAA	2 cut(s)	48, 375
TscAI	CASTG	1 cut(s)	286
TspDTI	ATGAA	1 cut(s)	89
TspRI	CASTG	1 cut(s)	286
VpaK11BI	GGWCC	1 cut(s)	4
XspI	CTAG	2 cut(s)	300, 360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.