Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001789

Physical Location & Seq

Genomic Coordinates Reverse (-)

44646450 .. 44649635

Gene Structure 3186 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG350300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGATAGTCTCAGGCGTGCTGAAGATATTGTTTCACAATCTATTGGTTGTCAGATTCAAGAGGTTCTTAGTGAACTTGAGTGTACCGTCTTCGCACTTGATCCCTCAGAGAAGCCAGTTGGTGATGACATAATTGCTCTGCTCCAGCAAGGAAGAAAATTTGACAACTGCAGTGACATTAACGAGCCAGAATCTTTTCATCAGGCTGCTATCAAGGTTGGTATTGCGTCTTCTACGGCAGCTCTTGGAGAGAGAAGAGCTCTAAAGAAACTCATCCAAAGAGCCCCTGCTGAGGAAGATAAGCGTAAGGAGTCAATCTCAATCGTGGCTTATCTATTGCATCCTATGAGAAAGGGAGGACTTAAGGAAGAAGTGCATGTGGTGGAGCAAATAAGGCTCCTGCTGAAGGATGATGAGGAGGCCAGGATGTACATGGGGGCTAATGGGTTTGTTGAAGCACTTCTACGCTTTCTTAACTCAGCTGTGCGTGAAGCAAATGTTTTGGCTCAAGAAAGTGGAGCTATGGCTCTATTCAATCTTGCTGTGAATAATAACAGAAATAAGGAGACAATATGCTTGCGTCAGGGTAATTCTGCAAAAGATGAAATGATTTCAAATACGAAGCTTATCAGTGCATTAGCAGCACTTCTGGAGTCTGAACAACCCATTGAGCAGGAGCAAGTTGTCTCATGTCTCTTTATGTTGTGTAATGGGAATGAGAAATGCAGTCAGATAGTCCTGCGGGAAGGGGTAATTCCTGCATTGGTGTTGATGTCCGTTAATGGAACATCAAGAGGAAAAGAGAAAGCTCAGAAGCTGTTAATGCTGTTTTGTGAGCAGAGAGACAAAAGAGACCAATCACCTCCGGAGGAGAAGGTACAACTCTGCGAACAAAATGACAACAATCCCATACCCGCTCCAGAATCAAAGCCTATGCAAATCCATCTCAAGAAGAAAGATGGGCAAAGCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0033612 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0070647 GO:0070696 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KAP U-box

Protein Analysis

324

Amino Acids

36.03

Weight (kDa)

5.41

Isoelectric Point (pI)

52.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001789)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24330 AT1G24330 AT1G27910 AT1G67530 AT1G67530 AT1G67530 AT1G67530
fragaria_vesca	FvH4_4g24030 FvH4_4g24030 FvH4_4g24030
malus_domestica	MD16G1116600.v1.1
prunus_persica	Prupe.1G229500_v2.0.a1 Prupe.1G229500_v2.0.a1 Prupe.1G229500_v2.0.a1 Prupe.1G229500_v2.0.a1 Prupe.1G229500_v2.0.a1
pyrus_communis	pycom13g10100 pycom16g09990
rosa_chinensis	RchiOBHm_Chr4g0430741 RchiOBHm_Chr7g0222371 RchiOBHm_Chr7g0222381
rosa_laevigata	RLG00000002065 RLG00000002066 RLG00000006953
rosa_multiflora	Rmu_co8254499.1_g000001 Rmu_sc0008769.1_g000015 Rmu_sc0030350.1_g000001 Rmu_sc0034402.1_g000003
rosa_roxburghii	Rroxscaffold_3G00237030 Rroxscaffold_5G00372450
rosa_rugosa	Rorug04G0245300 Rorug04G0245300 Rorug04G0245400 Rorug04G0245500 Rorug07G0207800
rosa_samantha	Rh4AG301500 Rh4BG309400 Rh4CG326100 Rh4DG306400 Rh7AG350300 Rh7BG340600 Rh7BG340700 Rh7CG367800 Rh7DG346500 Rh7DG346600
rosa_wichuraiana	Rw4G026200 Rw7G029570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	917
AccIII	TCCGGA	1 cut(s)	865
AciI	CCGC	2 cut(s)	742, 915
AclWI	GGATC	1 cut(s)	95
AcsI	RAATTY	1 cut(s)	158
AcuI	CTGAAG	2 cut(s)	42, 425
AfaI	GTAC	3 cut(s)	85, 431, 879
AfiI	CCNNNNNNNGG	2 cut(s)	292, 406
AflII	CTTAAG	1 cut(s)	362
AgsI	TTSAA	4 cut(s)	59, 455, 535, 615
AjnI	CCWGG	1 cut(s)	422
AluBI	AGCT	8 cut(s)	242, 260, 482, 521, 625, 809, 817, 969
AluI	AGCT	8 cut(s)	242, 260, 482, 521, 625, 809, 817, 969
Alw21I	GWGCWC	1 cut(s)	262
Alw26I	GTCTC	6 cut(s)	14, 560, 691, 698, 837, 846
AlwI	GGATC	1 cut(s)	95
AlwNI	CAGNNNCTG	1 cut(s)	817
Aor13HI	TCCGGA	1 cut(s)	865
AoxI	GGCC	1 cut(s)	420
ApeKI	GCWGC	3 cut(s)	206, 239, 641
ApoI	RAATTY	1 cut(s)	158
Asp700I	GAANNNNTTC	2 cut(s)	195, 459
AsuHPI	GGTGA	2 cut(s)	134, 852
BanII	GRGCYC	2 cut(s)	262, 286
BarI	GAAGNNNNNNTAC	4 cut(s)	214, 246, 447, 479
BbsI	GAAGAC	2 cut(s)	82, 222
Bbv12I	GWGCWC	1 cut(s)	262
BbvCI	CCTCAGC	1 cut(s)	291
BbvI	GCAGC	3 cut(s)	193, 251, 653
BccI	CCATC	2 cut(s)	951, 953
BceAI	ACGGC	1 cut(s)	252
BciT130I	CCWGG	1 cut(s)	424
BcoDI	GTCTC	6 cut(s)	14, 560, 691, 698, 837, 846
BfmI	CTRYAG	1 cut(s)	169
BfrI	CTTAAG	1 cut(s)	362
BisI	GCNGC	3 cut(s)	207, 240, 642
BlsI	GCNGC	3 cut(s)	208, 241, 643
Bme1390I	CCNGG	1 cut(s)	424
BmiI	GGNNCC	1 cut(s)	398
BmrFI	CCNGG	1 cut(s)	424
BmsI	GCATC	1 cut(s)	349
BpiI	GAAGAC	2 cut(s)	82, 222
BplI	GAGNNNNNCTC	4 cut(s)	244, 276, 302, 334
BpmI	CTGGAG	3 cut(s)	128, 671, 903
Bpu10I	CCTNAGC	1 cut(s)	291
BpuEI	CTTGAG	3 cut(s)	98, 492, 932
BsaI	GGTCTC	1 cut(s)	846
BsaWI	WCCGGW	1 cut(s)	865
Bsc4I	CCNNNNNNNGG	2 cut(s)	292, 406
Bse1I	ACTGG	1 cut(s)	116
BseAI	TCCGGA	1 cut(s)	865
BseBI	CCWGG	1 cut(s)	424
BseGI	GGATG	4 cut(s)	273, 340, 415, 432
BseLI	CCNNNNNNNGG	2 cut(s)	292, 406
BseMII	CTCAG	5 cut(s)	25, 120, 282, 492, 824
BseNI	ACTGG	1 cut(s)	116
BseRI	GAGGAG	2 cut(s)	431, 884
BseXI	GCAGC	3 cut(s)	193, 251, 653
BshFI	GGCC	1 cut(s)	422
BsiHKAI	GWGCWC	1 cut(s)	262
BsiSI	CCGG	1 cut(s)	866
BslI	CCNNNNNNNGG	2 cut(s)	292, 406
BsmAI	GTCTC	6 cut(s)	14, 560, 691, 698, 837, 846
BsnI	GGCC	1 cut(s)	422
Bso31I	GGTCTC	1 cut(s)	846
Bsp1286I	GDGCHC	2 cut(s)	262, 286
Bsp13I	TCCGGA	1 cut(s)	865
Bsp1407I	TGTACA	1 cut(s)	429
Bsp143I	GATC	1 cut(s)	100
BspACI	CCGC	2 cut(s)	742, 915
BspANI	GGCC	1 cut(s)	422
BspCNI	CTCAG	5 cut(s)	24, 119, 283, 491, 823
BspEI	TCCGGA	1 cut(s)	865
BspLI	GGNNCC	1 cut(s)	398
BspMAI	CTGCAG	1 cut(s)	173
BspPI	GGATC	1 cut(s)	95
BspQI	GCTCTTC	1 cut(s)	250
BspTI	CTTAAG	1 cut(s)	362
BspTNI	GGTCTC	1 cut(s)	846
BsrBI	CCGCTC	1 cut(s)	917
BsrGI	TGTACA	1 cut(s)	429
BsrI	ACTGG	1 cut(s)	116
BssMI	GATC	1 cut(s)	100
Bst2UI	CCWGG	1 cut(s)	424
Bst4CI	ACNGT	1 cut(s)	88
Bst6I	CTCTTC	1 cut(s)	250
BstAFI	CTTAAG	1 cut(s)	362
BstAUI	TGTACA	1 cut(s)	429
BstC8I	GCNNGC	2 cut(s)	18, 578
BstDEI	CTNAG	6 cut(s)	11, 68, 106, 291, 478, 810
BstENI	CCTNNNNNAGG	1 cut(s)	404
BstF5I	GGATG	4 cut(s)	273, 340, 415, 432
BstKTI	GATC	1 cut(s)	103
BstMAI	GTCTC	6 cut(s)	14, 560, 691, 698, 837, 846
BstMBI	GATC	1 cut(s)	100
BstMWI	GCNNNNNNNGC	3 cut(s)	394, 641, 823
BstNI	CCWGG	1 cut(s)	424
BstNSI	RCATGY	1 cut(s)	380
BstSCI	CCNGG	1 cut(s)	422
BstSFI	CTRYAG	1 cut(s)	169
BstV1I	GCAGC	3 cut(s)	193, 251, 653
BstV2I	GAAGAC	2 cut(s)	82, 222
BsuRI	GGCC	1 cut(s)	422
BtsCI	GGATG	4 cut(s)	273, 340, 415, 432
BtsI	GCAGTG	1 cut(s)	178
BtsIMutI	CAGTG	2 cut(s)	178, 637
Cac8I	GCNNGC	2 cut(s)	18, 578
CaiI	CAGNNNCTG	1 cut(s)	817
CseI	GACGC	2 cut(s)	216, 569
Csp6I	GTAC	3 cut(s)	84, 430, 878
CviAII	CATG	3 cut(s)	377, 433, 690
CviQI	GTAC	3 cut(s)	84, 430, 878
DdeI	CTNAG	6 cut(s)	11, 68, 106, 291, 478, 810
DpnI	GATC	1 cut(s)	102
DpnII	GATC	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	250
EarI	CTCTTC	1 cut(s)	250
Ecl136II	GAGCTC	1 cut(s)	260
Eco24I	GRGCYC	2 cut(s)	262, 286
Eco31I	GGTCTC	1 cut(s)	846
Eco53kI	GAGCTC	1 cut(s)	260
Eco57I	CTGAAG	2 cut(s)	42, 425
EcoICRI	GAGCTC	1 cut(s)	260
EcoNI	CCTNNNNNAGG	1 cut(s)	404
EcoRII	CCWGG	1 cut(s)	422
EcoT38I	GRGCYC	2 cut(s)	262, 286
FaeI	CATG	3 cut(s)	380, 436, 693
FalI	AAGNNNNNCTT	2 cut(s)	51, 83
FatI	CATG	3 cut(s)	376, 432, 689
FauI	CCCGC	2 cut(s)	735, 922
Fnu4HI	GCNGC	3 cut(s)	207, 240, 642
FokI	GGATG	4 cut(s)	260, 327, 422, 439
FriOI	GRGCYC	2 cut(s)	262, 286
Fsp4HI	GCNGC	3 cut(s)	207, 240, 642
GluI	GCNGC	3 cut(s)	207, 240, 642
GsuI	CTGGAG	3 cut(s)	128, 671, 903
HaeIII	GGCC	1 cut(s)	422
HapII	CCGG	1 cut(s)	866
HgaI	GACGC	2 cut(s)	216, 569
Hin1II	CATG	3 cut(s)	380, 436, 693
HindIII	AAGCTT	2 cut(s)	623, 967
HinfI	GANTC	5 cut(s)	55, 191, 311, 653, 923
HpaII	CCGG	1 cut(s)	866
HphI	GGTGA	2 cut(s)	134, 852
Hpy166II	GTNNAC	2 cut(s)	74, 84
Hpy188I	TCNGA	5 cut(s)	54, 109, 658, 732, 813
Hpy188III	TCNNGA	7 cut(s)	59, 509, 650, 792, 866, 920, 949
Hpy8I	GTNNAC	2 cut(s)	74, 84
HpyAV	CCTTC	3 cut(s)	400, 740, 868
HpyCH4III	ACNGT	1 cut(s)	88
HpyCH4V	TGCA	8 cut(s)	171, 340, 376, 596, 635, 726, 761, 937
HpyF10VI	GCNNNNNNNGC	3 cut(s)	394, 641, 823
HpyF3I	CTNAG	6 cut(s)	11, 68, 106, 291, 478, 810
Hsp92II	CATG	3 cut(s)	380, 436, 693
Kpn2I	TCCGGA	1 cut(s)	865
Kzo9I	GATC	1 cut(s)	100
LguI	GCTCTTC	1 cut(s)	250
LmnI	GCTCC	6 cut(s)	147, 385, 402, 518, 676, 922
Lsp1109I	GCAGC	3 cut(s)	193, 251, 653
LweI	GCATC	1 cut(s)	349
MaeIII	GTNAC	1 cut(s)	173
MalI	GATC	1 cut(s)	102
MbiI	CCGCTC	1 cut(s)	917
MboI	GATC	1 cut(s)	100
MboII	GAAGA	8 cut(s)	35, 82, 165, 222, 267, 308, 380, 964
MhlI	GDGCHC	2 cut(s)	262, 286
MluCI	AATT	4 cut(s)	132, 158, 589, 753
MlyI	GAGTC	2 cut(s)	320, 662
MnlI	CCTC	9 cut(s)	55, 115, 286, 350, 409, 412, 788, 862, 873
MroI	TCCGGA	1 cut(s)	865
MroXI	GAANNNNTTC	2 cut(s)	195, 459
MseI	TTAA	5 cut(s)	180, 363, 474, 780, 821
MspA1I	CMGCKG	1 cut(s)	482
MspCI	CTTAAG	1 cut(s)	362
MspI	CCGG	1 cut(s)	866
MspR9I	CCNGG	1 cut(s)	424
MvaI	CCWGG	1 cut(s)	424
MwoI	GCNNNNNNNGC	3 cut(s)	394, 641, 823
NdeII	GATC	1 cut(s)	100
NlaIII	CATG	3 cut(s)	380, 436, 693
NlaIV	GGNNCC	1 cut(s)	398
NmuCI	GTSAC	1 cut(s)	173
NspI	RCATGY	1 cut(s)	380
PciSI	GCTCTTC	1 cut(s)	250
PdmI	GAANNNNTTC	2 cut(s)	195, 459
PfeI	GAWTC	3 cut(s)	55, 191, 923
PkrI	GCNGC	3 cut(s)	208, 241, 643
PleI	GAGTC	2 cut(s)	319, 661
PpsI	GAGTC	2 cut(s)	319, 661
Psp124BI	GAGCTC	1 cut(s)	262
Psp6I	CCWGG	1 cut(s)	422
PspGI	CCWGG	1 cut(s)	422
PspN4I	GGNNCC	1 cut(s)	398
PstI	CTGCAG	1 cut(s)	173
PstNI	CAGNNNCTG	1 cut(s)	817
PvuII	CAGCTG	1 cut(s)	482
RsaI	GTAC	3 cut(s)	85, 431, 879
RsaNI	GTAC	3 cut(s)	84, 430, 878
SacI	GAGCTC	1 cut(s)	262
SapI	GCTCTTC	1 cut(s)	250
SaqAI	TTAA	5 cut(s)	180, 363, 474, 780, 821
SatI	GCNGC	3 cut(s)	207, 240, 642
Sau3AI	GATC	1 cut(s)	100
SchI	GAGTC	2 cut(s)	320, 662
ScrFI	CCNGG	1 cut(s)	424
SduI	GDGCHC	2 cut(s)	262, 286
SfaNI	GCATC	1 cut(s)	349
SfcI	CTRYAG	1 cut(s)	169
SmlI	CTYRAG	4 cut(s)	77, 362, 507, 947
SmoI	CTYRAG	4 cut(s)	77, 362, 507, 947
Sse9I	AATT	4 cut(s)	132, 158, 589, 753
SsiI	CCGC	2 cut(s)	742, 915
SstI	GAGCTC	1 cut(s)	262
StyD4I	CCNGG	1 cut(s)	422
TaaI	ACNGT	1 cut(s)	88
TasI	AATT	4 cut(s)	132, 158, 589, 753
TatI	WGTACW	1 cut(s)	429
TfiI	GAWTC	3 cut(s)	55, 191, 923
Tru1I	TTAA	5 cut(s)	180, 363, 474, 780, 821
Tru9I	TTAA	5 cut(s)	180, 363, 474, 780, 821
TscAI	CASTG	2 cut(s)	178, 637
TseFI	GTSAC	1 cut(s)	173
TseI	GCWGC	3 cut(s)	206, 239, 641
Tsp45I	GTSAC	1 cut(s)	173
TspDTI	ATGAA	2 cut(s)	188, 618
TspGWI	ACGGA	1 cut(s)	766
TspRI	CASTG	2 cut(s)	178, 637
Vha464I	CTTAAG	1 cut(s)	362
XagI	CCTNNNNNAGG	1 cut(s)	404
XapI	RAATTY	1 cut(s)	158
XceI	RCATGY	1 cut(s)	380
XcmI	CCANNNNNNNNNTGG	1 cut(s)	430
XmnI	GAANNNNTTC	2 cut(s)	195, 459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.