Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008769.1

Orthogroup ID

OG0001789

Physical Location & Seq

Genomic Coordinates Forward (+)

74568 .. 76668

Gene Structure 2101 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008769.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

atgataaatgattcacagggttctgcaccttgttctgccactggtcaaggttctaatgaggatactgggtctgggggaaatggtcaagcatttgaccgacaactgtcagaacttatgtatgacccggtcatcattgcttctggtcaaacatatgaaaggatttgcattgaaaagtggtttagcgatgggcatagtacctgcccaaagactcaacaaaagctgagtcatctttctttaactccaaattactgtgtcaagggtctcatttctagttggtgcgaacagaatggaatttccattcccgatggccccccagagtttcttgaccttaactattggaggctggcattttctgagtctgagtccgctaattcaaaatctatgggtactgttggctcttgcaacttgaagggtgctaaagtggttcctatagaggagagttgtacaatagaggaggctgtcggaaatgaaacagaagagctttctccggcatcagaagagtctgagcctgatgcttttgagagttatcaggatcttttaactgccttgaatgaaggggaggacttaaggaagaagtgcaaggtggtggaggccaggatgtacatgggggctaatgggtttgttgaagcacttctgcactttcttaactcagctgtgcgtgaagcaaatgttttggctcaagaaagtggagctatggctctattcaatcttgctgtgaataataacagatggtcctgcggcctgcgggaaggggtaattcctgcattggtgttgatgtccgttaatggaacatcaagaggaaaagagaaagctcagaagctgttaatgctgttttgtgagcagagagacaaaagagaccaatcacctccggaggagaaggtacaactctgcgaacaaaatgacaacaatcccatacccgctccagaatcaaagcctatgcaaatccgtctcaagaagaaagatgggcaaagcttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0033612 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0070647 GO:0070696 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KAP U-box

Protein Analysis

325

Amino Acids

35.6

Weight (kDa)

4.79

Isoelectric Point (pI)

49.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001789)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24330 AT1G24330 AT1G27910 AT1G67530 AT1G67530 AT1G67530 AT1G67530
fragaria_vesca	FvH4_4g24030 FvH4_4g24030 FvH4_4g24030
malus_domestica	MD16G1116600.v1.1
prunus_persica	Prupe.1G229500_v2.0.a1 Prupe.1G229500_v2.0.a1 Prupe.1G229500_v2.0.a1 Prupe.1G229500_v2.0.a1 Prupe.1G229500_v2.0.a1
pyrus_communis	pycom13g10100 pycom16g09990
rosa_chinensis	RchiOBHm_Chr4g0430741 RchiOBHm_Chr7g0222371 RchiOBHm_Chr7g0222381
rosa_laevigata	RLG00000002065 RLG00000002066 RLG00000006953
rosa_multiflora	Rmu_co8254499.1_g000001 Rmu_sc0008769.1_g000015 Rmu_sc0030350.1_g000001 Rmu_sc0034402.1_g000003
rosa_roxburghii	Rroxscaffold_3G00237030 Rroxscaffold_5G00372450
rosa_rugosa	Rorug04G0245300 Rorug04G0245300 Rorug04G0245400 Rorug04G0245500 Rorug07G0207800
rosa_samantha	Rh4AG301500 Rh4BG309400 Rh4CG326100 Rh4DG306400 Rh7AG350300 Rh7BG340600 Rh7BG340700 Rh7CG367800 Rh7DG346500 Rh7DG346600
rosa_wichuraiana	Rw4G026200 Rw7G029570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	206
AccBSI	CCGCTC	1 cut(s)	920
AccIII	TCCGGA	1 cut(s)	868
AciI	CCGC	4 cut(s)	366, 738, 745, 918
AclWI	GGATC	1 cut(s)	540
AcsI	RAATTY	1 cut(s)	291
AfaI	GTAC	5 cut(s)	196, 388, 445, 602, 882
AflII	CTTAAG	1 cut(s)	565
AgsI	TTSAA	6 cut(s)	170, 375, 409, 550, 626, 706
AjnI	CCWGG	1 cut(s)	593
AluBI	AGCT	7 cut(s)	220, 481, 653, 692, 812, 820, 972
AluI	AGCT	7 cut(s)	220, 481, 653, 692, 812, 820, 972
Alw26I	GTCTC	4 cut(s)	266, 840, 849, 953
AlwI	GGATC	1 cut(s)	540
AlwNI	CAGNNNCTG	1 cut(s)	820
Aor13HI	TCCGGA	1 cut(s)	868
AoxI	GGCC	3 cut(s)	307, 591, 739
ApoI	RAATTY	1 cut(s)	291
ArsI	GACNNNNNNTTYG	2 cut(s)	208, 240
Asp700I	GAANNNNTTC	1 cut(s)	630
AspS9I	GGNCC	2 cut(s)	308, 732
AsuC2I	CCSGG	1 cut(s)	125
AsuHPI	GGTGA	1 cut(s)	855
AvaII	GGWCC	1 cut(s)	732
BccI	CCATC	4 cut(s)	179, 299, 723, 956
BciT130I	CCWGG	1 cut(s)	595
BciVI	GTATCC	1 cut(s)	55
BcnI	CCSGG	1 cut(s)	125
BcoDI	GTCTC	4 cut(s)	266, 840, 849, 953
BfaI	CTAG	1 cut(s)	270
BfmI	CTRYAG	1 cut(s)	429
BfrI	CTTAAG	1 cut(s)	565
BfuAI	ACCTGC	1 cut(s)	206
BfuI	GTATCC	1 cut(s)	55
BisI	GCNGC	1 cut(s)	739
BlsI	GCNGC	1 cut(s)	740
Bme1390I	CCNGG	2 cut(s)	125, 595
Bme18I	GGWCC	1 cut(s)	732
BmgT120I	GGNCC	2 cut(s)	308, 732
BmiI	GGNNCC	2 cut(s)	310, 426
BmrFI	CCNGG	2 cut(s)	125, 595
BmrI	ACTGGG	1 cut(s)	75
BmsI	GCATC	2 cut(s)	500, 502
BmuI	ACTGGG	1 cut(s)	75
BoxI	GACNNNNGTC	1 cut(s)	103
BpmI	CTGGAG	1 cut(s)	906
BpuEI	CTTGAG	2 cut(s)	663, 935
BpuMI	CCSGG	1 cut(s)	125
BsaI	GGTCTC	2 cut(s)	266, 849
BsaWI	WCCGGW	1 cut(s)	868
Bse1I	ACTGG	2 cut(s)	46, 70
Bse3DI	GCAATG	1 cut(s)	132
BseAI	TCCGGA	1 cut(s)	868
BseBI	CCWGG	1 cut(s)	595
BseGI	GGATG	1 cut(s)	603
BseMI	GCAATG	1 cut(s)	132
BseMII	CTCAG	6 cut(s)	212, 345, 351, 495, 663, 827
BseNI	ACTGG	2 cut(s)	46, 70
BseRI	GAGGAG	3 cut(s)	449, 467, 887
BsgI	GTGCAG	2 cut(s)	9, 620
BshFI	GGCC	3 cut(s)	309, 593, 741
BsiSI	CCGG	3 cut(s)	125, 488, 869
BsmAI	GTCTC	4 cut(s)	266, 840, 849, 953
BsmBI	CGTCTC	1 cut(s)	953
BsnI	GGCC	3 cut(s)	309, 593, 741
Bso31I	GGTCTC	2 cut(s)	266, 849
Bsp13I	TCCGGA	1 cut(s)	868
Bsp1407I	TGTACA	2 cut(s)	443, 600
Bsp143I	GATC	1 cut(s)	532
BspACI	CCGC	4 cut(s)	366, 738, 745, 918
BspANI	GGCC	3 cut(s)	309, 593, 741
BspCNI	CTCAG	6 cut(s)	213, 346, 352, 496, 662, 826
BspEI	TCCGGA	1 cut(s)	868
BspLI	GGNNCC	2 cut(s)	310, 426
BspMI	ACCTGC	1 cut(s)	206
BspPI	GGATC	1 cut(s)	540
BspQI	GCTCTTC	1 cut(s)	471
BspTI	CTTAAG	1 cut(s)	565
BspTNI	GGTCTC	2 cut(s)	266, 849
BsrBI	CCGCTC	1 cut(s)	920
BsrDI	GCAATG	1 cut(s)	132
BsrGI	TGTACA	2 cut(s)	443, 600
BsrI	ACTGG	2 cut(s)	46, 70
BssMI	GATC	1 cut(s)	532
Bst2UI	CCWGG	1 cut(s)	595
Bst4CI	ACNGT	3 cut(s)	105, 251, 391
Bst6I	CTCTTC	2 cut(s)	471, 492
BstAFI	CTTAAG	1 cut(s)	565
BstAUI	TGTACA	2 cut(s)	443, 600
BstC8I	GCNNGC	2 cut(s)	345, 743
BstDEI	CTNAG	6 cut(s)	221, 354, 360, 504, 649, 813
BstF5I	GGATG	1 cut(s)	603
BstKTI	GATC	1 cut(s)	535
BstMAI	GTCTC	4 cut(s)	266, 840, 849, 953
BstMBI	GATC	1 cut(s)	532
BstMWI	GCNNNNNNNGC	1 cut(s)	826
BstNI	CCWGG	1 cut(s)	595
BstPAI	GACNNNNGTC	1 cut(s)	103
BstSCI	CCNGG	2 cut(s)	123, 593
BstSFI	CTRYAG	1 cut(s)	429
BstX2I	RGATCY	1 cut(s)	532
BstYI	RGATCY	1 cut(s)	532
BsuI	GTATCC	1 cut(s)	55
BsuRI	GGCC	3 cut(s)	309, 593, 741
BtgZI	GCGATG	1 cut(s)	198
BtsCI	GGATG	1 cut(s)	603
BtsIMutI	CAGTG	1 cut(s)	39
BveI	ACCTGC	1 cut(s)	206
Cac8I	GCNNGC	2 cut(s)	345, 743
CaiI	CAGNNNCTG	1 cut(s)	820
Cfr13I	GGNCC	2 cut(s)	308, 732
Csp6I	GTAC	5 cut(s)	195, 387, 444, 601, 881
CviAII	CATG	1 cut(s)	604
CviQI	GTAC	5 cut(s)	195, 387, 444, 601, 881
DdeI	CTNAG	6 cut(s)	221, 354, 360, 504, 649, 813
DpnI	GATC	1 cut(s)	534
DpnII	GATC	1 cut(s)	532
Eam1104I	CTCTTC	2 cut(s)	471, 492
EarI	CTCTTC	2 cut(s)	471, 492
Eco31I	GGTCTC	2 cut(s)	266, 849
Eco47I	GGWCC	1 cut(s)	732
EcoRII	CCWGG	1 cut(s)	593
Esp3I	CGTCTC	1 cut(s)	953
FaeI	CATG	1 cut(s)	607
FatI	CATG	1 cut(s)	603
FauI	CCCGC	2 cut(s)	738, 925
FauNDI	CATATG	1 cut(s)	151
Fnu4HI	GCNGC	1 cut(s)	739
FokI	GGATG	1 cut(s)	610
Fsp4HI	GCNGC	1 cut(s)	739
FspBI	CTAG	1 cut(s)	270
GluI	GCNGC	1 cut(s)	739
GsuI	CTGGAG	1 cut(s)	906
HaeIII	GGCC	3 cut(s)	309, 593, 741
HapII	CCGG	3 cut(s)	125, 488, 869
Hin1II	CATG	1 cut(s)	607
HindIII	AAGCTT	1 cut(s)	970
HinfI	GANTC	7 cut(s)	11, 208, 223, 356, 362, 500, 926
HpaII	CCGG	3 cut(s)	125, 488, 869
HphI	GGTGA	1 cut(s)	855
Hpy188I	TCNGA	7 cut(s)	109, 355, 361, 464, 496, 505, 816
Hpy188III	TCNNGA	8 cut(s)	302, 323, 530, 680, 795, 869, 923, 952
HpyAV	CCTTC	4 cut(s)	403, 548, 743, 871
HpyCH4III	ACNGT	3 cut(s)	105, 251, 391
HpyCH4V	TGCA	7 cut(s)	26, 165, 402, 579, 637, 764, 940
HpyF10VI	GCNNNNNNNGC	1 cut(s)	826
HpyF3I	CTNAG	6 cut(s)	221, 354, 360, 504, 649, 813
Hsp92II	CATG	1 cut(s)	607
Kpn2I	TCCGGA	1 cut(s)	868
Kzo9I	GATC	1 cut(s)	532
LguI	GCTCTTC	1 cut(s)	471
LmnI	GCTCC	2 cut(s)	689, 925
LweI	GCATC	2 cut(s)	500, 502
MaeI	CTAG	1 cut(s)	270
MalI	GATC	1 cut(s)	534
MbiI	CCGCTC	1 cut(s)	920
MboI	GATC	1 cut(s)	532
MboII	GAAGA	4 cut(s)	488, 509, 583, 967
MflI	RGATCY	1 cut(s)	532
MluCI	AATT	4 cut(s)	244, 291, 370, 756
MlyI	GAGTC	5 cut(s)	202, 232, 365, 371, 509
MmeI	TCCRAC	1 cut(s)	442
MroI	TCCGGA	1 cut(s)	868
MroXI	GAANNNNTTC	1 cut(s)	630
MseI	TTAA	7 cut(s)	236, 330, 539, 566, 645, 783, 824
MspA1I	CMGCKG	1 cut(s)	653
MspCI	CTTAAG	1 cut(s)	565
MspI	CCGG	3 cut(s)	125, 488, 869
MspR9I	CCNGG	2 cut(s)	125, 595
MvaI	CCWGG	1 cut(s)	595
MwoI	GCNNNNNNNGC	1 cut(s)	826
NciI	CCSGG	1 cut(s)	125
NdeI	CATATG	1 cut(s)	151
NdeII	GATC	1 cut(s)	532
NlaIII	CATG	1 cut(s)	607
NlaIV	GGNNCC	2 cut(s)	310, 426
PciSI	GCTCTTC	1 cut(s)	471
PdmI	GAANNNNTTC	1 cut(s)	630
PfeI	GAWTC	2 cut(s)	11, 926
PflFI	GACNNNGTC	1 cut(s)	125
PkrI	GCNGC	1 cut(s)	740
PleI	GAGTC	5 cut(s)	202, 231, 364, 370, 508
PpsI	GAGTC	5 cut(s)	202, 231, 364, 370, 508
PshAI	GACNNNNGTC	1 cut(s)	103
Psp6I	CCWGG	1 cut(s)	593
PspGI	CCWGG	1 cut(s)	593
PspN4I	GGNNCC	2 cut(s)	310, 426
PspPI	GGNCC	2 cut(s)	308, 732
PstNI	CAGNNNCTG	1 cut(s)	820
PsuI	RGATCY	1 cut(s)	532
PsyI	GACNNNGTC	1 cut(s)	125
PvuII	CAGCTG	1 cut(s)	653
RsaI	GTAC	5 cut(s)	196, 388, 445, 602, 882
RsaNI	GTAC	5 cut(s)	195, 387, 444, 601, 881
SapI	GCTCTTC	1 cut(s)	471
SaqAI	TTAA	7 cut(s)	236, 330, 539, 566, 645, 783, 824
SatI	GCNGC	1 cut(s)	739
Sau3AI	GATC	1 cut(s)	532
Sau96I	GGNCC	2 cut(s)	308, 732
SchI	GAGTC	5 cut(s)	202, 232, 365, 371, 509
ScrFI	CCNGG	2 cut(s)	125, 595
SfaNI	GCATC	2 cut(s)	500, 502
SfcI	CTRYAG	1 cut(s)	429
SinI	GGWCC	1 cut(s)	732
SmlI	CTYRAG	3 cut(s)	565, 678, 950
SmoI	CTYRAG	3 cut(s)	565, 678, 950
Sse9I	AATT	4 cut(s)	244, 291, 370, 756
SsiI	CCGC	4 cut(s)	366, 738, 745, 918
SspMI	CTAG	1 cut(s)	270
StyD4I	CCNGG	2 cut(s)	123, 593
TaaI	ACNGT	3 cut(s)	105, 251, 391
TaqII	GACCGA	1 cut(s)	111
TasI	AATT	4 cut(s)	244, 291, 370, 756
TatI	WGTACW	2 cut(s)	443, 600
TauI	GCSGC	1 cut(s)	741
TfiI	GAWTC	2 cut(s)	11, 926
Tru1I	TTAA	7 cut(s)	236, 330, 539, 566, 645, 783, 824
Tru9I	TTAA	7 cut(s)	236, 330, 539, 566, 645, 783, 824
TscAI	CASTG	1 cut(s)	46
TspDTI	ATGAA	3 cut(s)	168, 483, 567
TspGWI	ACGGA	2 cut(s)	769, 935
TspRI	CASTG	1 cut(s)	46
Tth111I	GACNNNGTC	1 cut(s)	125
Vha464I	CTTAAG	1 cut(s)	565
VpaK11BI	GGWCC	1 cut(s)	732
XapI	RAATTY	1 cut(s)	291
XcmI	CCANNNNNNNNNTGG	1 cut(s)	601
XmnI	GAANNNNTTC	1 cut(s)	630
XspI	CTAG	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.