Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8254499.1

Orthogroup ID

OG0001789

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 774

Gene Structure 773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8254499.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 773 bp

atgcttgcgtcaggggtaatttcattgctggaggaaatgatctcctatcccagttctcatggacctgcgacagccctttatctgaatctctcctgccttgaagaagccaagcctctaattggcacaagccctgccgtccctttcttaacccaactccttcaagctaatgctgaaacccaatgcaagcttgatgccctccatgccctatacaacctttctagcattccctcaaacattccaaatcttctttcagccagtatcatcagtggtttgcaatcccttcttgcagactctggtgaacattcatggacagaaaaatgtatagctgttttgataaatttggcttcaagtaattctgcgaaagatgaaatgatttcaaatacgaagcttatcagtgcactagcagcacttctggaggctgagcaacccattgagcaggagcaagctgtctcatgtctctttatgttgtgtaatgggaatgagaaatgcagtcagatggtcctgcaggaaggggtaattcctgcattggtgtcgatgtccgttaatggaacatcaagaggaaaagagaaagctcagaagctgttgatgctgtttcgtgagcagagacaaagagaccaatcacctctggaggagaaggtgcaactctgtgaacaaaatgacaacaatcccacacccgctccagaatcaaagccgctatgcaaatccatctcaagaagaaagatgggcaaagcttttagcttcttatggaagagcaaaagctattctgtttacca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0033612 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0070647 GO:0070696 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KAP U-box

Protein Analysis

257

Amino Acids

27.99

Weight (kDa)

5.72

Isoelectric Point (pI)

50.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001789)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24330 AT1G24330 AT1G27910 AT1G67530 AT1G67530 AT1G67530 AT1G67530
fragaria_vesca	FvH4_4g24030 FvH4_4g24030 FvH4_4g24030
malus_domestica	MD16G1116600.v1.1
prunus_persica	Prupe.1G229500_v2.0.a1 Prupe.1G229500_v2.0.a1 Prupe.1G229500_v2.0.a1 Prupe.1G229500_v2.0.a1 Prupe.1G229500_v2.0.a1
pyrus_communis	pycom13g10100 pycom16g09990
rosa_chinensis	RchiOBHm_Chr4g0430741 RchiOBHm_Chr7g0222371 RchiOBHm_Chr7g0222381
rosa_laevigata	RLG00000002065 RLG00000002066 RLG00000006953
rosa_multiflora	Rmu_co8254499.1_g000001 Rmu_sc0008769.1_g000015 Rmu_sc0030350.1_g000001 Rmu_sc0034402.1_g000003
rosa_roxburghii	Rroxscaffold_3G00237030 Rroxscaffold_5G00372450
rosa_rugosa	Rorug04G0245300 Rorug04G0245300 Rorug04G0245400 Rorug04G0245500 Rorug07G0207800
rosa_samantha	Rh4AG301500 Rh4BG309400 Rh4CG326100 Rh4DG306400 Rh7AG350300 Rh7BG340600 Rh7BG340700 Rh7CG367800 Rh7DG346500 Rh7DG346600
rosa_wichuraiana	Rw4G026200 Rw7G029570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	73
AccBSI	CCGCTC	1 cut(s)	677
AciI	CCGC	2 cut(s)	675, 692
AcsI	RAATTY	1 cut(s)	337
AfiI	CCNNNNNNNGG	1 cut(s)	119
AgsI	TTSAA	4 cut(s)	101, 161, 348, 378
AjuI	GAANNNNNNNTTGG	2 cut(s)	232, 264
Alw21I	GWGCWC	1 cut(s)	400
Alw26I	GTCTC	4 cut(s)	454, 461, 598, 606
Alw44I	GTGCAC	1 cut(s)	396
AlwNI	CAGNNNCTG	2 cut(s)	293, 580
ApaLI	GTGCAC	1 cut(s)	396
ApeKI	GCWGC	1 cut(s)	404
ApoI	RAATTY	1 cut(s)	337
AspS9I	GGNCC	2 cut(s)	62, 499
AsuHPI	GGTGA	2 cut(s)	308, 612
AvaII	GGWCC	2 cut(s)	62, 499
BaeGI	GKGCMC	1 cut(s)	400
Bbv12I	GWGCWC	1 cut(s)	400
BbvI	GCAGC	1 cut(s)	416
BccI	CCATC	3 cut(s)	490, 713, 715
BceAI	ACGGC	1 cut(s)	119
BcgI	CGANNNNNNTGC	2 cut(s)	513, 547
BcoDI	GTCTC	4 cut(s)	454, 461, 598, 606
BfaI	CTAG	2 cut(s)	219, 401
BfmI	CTRYAG	1 cut(s)	503
BfuAI	ACCTGC	1 cut(s)	73
BisI	GCNGC	2 cut(s)	405, 692
BlpI	GCTNAGC	1 cut(s)	420
BlsI	GCNGC	2 cut(s)	406, 693
Bme18I	GGWCC	2 cut(s)	62, 499
BmgT120I	GGNCC	2 cut(s)	62, 499
BmrI	ACTGGG	1 cut(s)	45
BmsI	GCATC	2 cut(s)	181, 576
BmuI	ACTGGG	1 cut(s)	45
BpmI	CTGGAG	4 cut(s)	50, 434, 647, 663
Bpu1102I	GCTNAGC	1 cut(s)	420
BpuEI	CTTGAG	1 cut(s)	694
BsaI	GGTCTC	1 cut(s)	606
BsaXI	ACNNNNNCTCC	2 cut(s)	661, 691
Bsc4I	CCNNNNNNNGG	1 cut(s)	119
Bse1I	ACTGG	2 cut(s)	51, 255
Bse3DI	GCAATG	1 cut(s)	23
BseLI	CCNNNNNNNGG	1 cut(s)	119
BseMI	GCAATG	1 cut(s)	23
BseMII	CTCAG	2 cut(s)	411, 587
BseNI	ACTGG	2 cut(s)	51, 255
BseRI	GAGGAG	1 cut(s)	644
BseSI	GKGCMC	1 cut(s)	400
BseXI	GCAGC	1 cut(s)	416
BsiHKAI	GWGCWC	1 cut(s)	400
BslFI	GGGAC	1 cut(s)	122
BslI	CCNNNNNNNGG	1 cut(s)	119
BsmAI	GTCTC	4 cut(s)	454, 461, 598, 606
BsmFI	GGGAC	1 cut(s)	122
BsmI	GAATGC	1 cut(s)	222
Bso31I	GGTCTC	1 cut(s)	606
Bsp1286I	GDGCHC	1 cut(s)	400
Bsp143I	GATC	1 cut(s)	39
Bsp1720I	GCTNAGC	1 cut(s)	420
BspACI	CCGC	2 cut(s)	675, 692
BspCNI	CTCAG	2 cut(s)	412, 586
BspMAI	CTGCAG	1 cut(s)	507
BspMI	ACCTGC	1 cut(s)	73
BspQI	GCTCTTC	1 cut(s)	743
BspTNI	GGTCTC	1 cut(s)	606
BsrBI	CCGCTC	1 cut(s)	677
BsrDI	GCAATG	1 cut(s)	23
BsrI	ACTGG	2 cut(s)	51, 255
BssMI	GATC	1 cut(s)	39
Bst6I	CTCTTC	1 cut(s)	743
BstC8I	GCNNGC	3 cut(s)	6, 185, 444
BstDEI	CTNAG	2 cut(s)	420, 573
BstKTI	GATC	1 cut(s)	42
BstMAI	GTCTC	4 cut(s)	454, 461, 598, 606
BstMBI	GATC	1 cut(s)	39
BstMWI	GCNNNNNNNGC	3 cut(s)	200, 404, 586
BstSFI	CTRYAG	1 cut(s)	503
BstSLI	GKGCMC	1 cut(s)	400
BstV1I	GCAGC	1 cut(s)	416
BtsIMutI	CAGTG	2 cut(s)	271, 400
BveI	ACCTGC	1 cut(s)	73
Cac8I	GCNNGC	3 cut(s)	6, 185, 444
CaiI	CAGNNNCTG	2 cut(s)	293, 580
Cfr13I	GGNCC	2 cut(s)	62, 499
CviAII	CATG	4 cut(s)	59, 200, 306, 453
DdeI	CTNAG	2 cut(s)	420, 573
DpnI	GATC	1 cut(s)	41
DpnII	GATC	1 cut(s)	39
Eam1104I	CTCTTC	1 cut(s)	743
EarI	CTCTTC	1 cut(s)	743
Eco31I	GGTCTC	1 cut(s)	606
Eco47I	GGWCC	2 cut(s)	62, 499
FaeI	CATG	4 cut(s)	62, 203, 309, 456
FaiI	YATR	9 cut(s)	60, 201, 208, 307, 323, 454, 464, 697, 745
FaqI	GGGAC	1 cut(s)	122
FatI	CATG	4 cut(s)	58, 199, 305, 452
FauI	CCCGC	1 cut(s)	682
Fnu4HI	GCNGC	2 cut(s)	405, 692
Fsp4HI	GCNGC	2 cut(s)	405, 692
FspBI	CTAG	2 cut(s)	219, 401
GluI	GCNGC	2 cut(s)	405, 692
GsuI	CTGGAG	4 cut(s)	50, 434, 647, 663
Hin1II	CATG	4 cut(s)	62, 203, 309, 456
HindIII	AAGCTT	3 cut(s)	185, 386, 729
HinfI	GANTC	3 cut(s)	85, 290, 683
HphI	GGTGA	2 cut(s)	308, 612
Hpy166II	GTNNAC	4 cut(s)	299, 398, 650, 769
Hpy188I	TCNGA	3 cut(s)	84, 495, 576
Hpy188III	TCNNGA	6 cut(s)	413, 555, 596, 626, 680, 711
Hpy8I	GTNNAC	4 cut(s)	299, 398, 650, 769
HpyAV	CCTTC	4 cut(s)	167, 290, 503, 628
HpyCH4V	TGCA	9 cut(s)	183, 274, 287, 398, 489, 505, 524, 640, 699
HpyF10VI	GCNNNNNNNGC	3 cut(s)	200, 404, 586
HpyF3I	CTNAG	2 cut(s)	420, 573
Hsp92II	CATG	4 cut(s)	62, 203, 309, 456
Kzo9I	GATC	1 cut(s)	39
LguI	GCTCTTC	1 cut(s)	743
LmnI	GCTCC	2 cut(s)	439, 682
Lsp1109I	GCAGC	1 cut(s)	416
LweI	GCATC	2 cut(s)	181, 576
MaeI	CTAG	2 cut(s)	219, 401
MalI	GATC	1 cut(s)	41
MbiI	CCGCTC	1 cut(s)	677
MboI	GATC	1 cut(s)	39
MboII	GAAGA	4 cut(s)	113, 236, 726, 760
MhlI	GDGCHC	1 cut(s)	400
MluCI	AATT	5 cut(s)	18, 117, 337, 352, 516
MlyI	GAGTC	1 cut(s)	284
MnlI	CCTC	8 cut(s)	25, 123, 206, 238, 409, 551, 622, 633
MseI	TTAA	2 cut(s)	146, 543
Mva1269I	GAATGC	1 cut(s)	222
MwoI	GCNNNNNNNGC	3 cut(s)	200, 404, 586
NdeII	GATC	1 cut(s)	39
NlaIII	CATG	4 cut(s)	62, 203, 309, 456
PciSI	GCTCTTC	1 cut(s)	743
PctI	GAATGC	1 cut(s)	222
PfeI	GAWTC	2 cut(s)	85, 683
PkrI	GCNGC	2 cut(s)	406, 693
PleI	GAGTC	1 cut(s)	284
PpsI	GAGTC	1 cut(s)	284
PspPI	GGNCC	2 cut(s)	62, 499
PstI	CTGCAG	1 cut(s)	507
PstNI	CAGNNNCTG	2 cut(s)	293, 580
SapI	GCTCTTC	1 cut(s)	743
SaqAI	TTAA	2 cut(s)	146, 543
SatI	GCNGC	2 cut(s)	405, 692
Sau3AI	GATC	1 cut(s)	39
Sau96I	GGNCC	2 cut(s)	62, 499
SbfI	CCTGCAGG	1 cut(s)	507
SchI	GAGTC	1 cut(s)	284
SdaI	CCTGCAGG	1 cut(s)	507
SduI	GDGCHC	1 cut(s)	400
SfaNI	GCATC	2 cut(s)	181, 576
SfcI	CTRYAG	1 cut(s)	503
SinI	GGWCC	2 cut(s)	62, 499
SmlI	CTYRAG	1 cut(s)	709
SmoI	CTYRAG	1 cut(s)	709
Sse8387I	CCTGCAGG	1 cut(s)	507
Sse9I	AATT	5 cut(s)	18, 117, 337, 352, 516
SsiI	CCGC	2 cut(s)	675, 692
SspMI	CTAG	2 cut(s)	219, 401
TaqI	TCGA	1 cut(s)	533
TasI	AATT	5 cut(s)	18, 117, 337, 352, 516
TauI	GCSGC	1 cut(s)	694
TfiI	GAWTC	2 cut(s)	85, 683
Tru1I	TTAA	2 cut(s)	146, 543
Tru9I	TTAA	2 cut(s)	146, 543
TscAI	CASTG	2 cut(s)	271, 400
TseI	GCWGC	1 cut(s)	404
TspDTI	ATGAA	3 cut(s)	12, 294, 381
TspGWI	ACGGA	1 cut(s)	529
TspRI	CASTG	2 cut(s)	271, 400
VneI	GTGCAC	1 cut(s)	396
VpaK11BI	GGWCC	2 cut(s)	62, 499
XapI	RAATTY	1 cut(s)	337
XspI	CTAG	2 cut(s)	219, 401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.