Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001789

Physical Location & Seq

Genomic Coordinates Forward (+)

41539811 .. 41541157

Gene Structure 1347 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0245500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGCCGCGACCACCGCAGCTCCTCCACCTTCCAAATCCACACCCACCAAACTGAACCCCAACACCGTGCGAAAAGCCGTCAATGCCCTCCTCAAATGGAGAAATTCCCAGACCCAGAACCCCGACGATCTCTTAGACTCCTCCGACGAATTCACCTACCTCGTCCTCACCCTCAAGAAAATCCCACCAAAGGGTCGCGTCAACGCCTTCAAAATCCCTCTCCCTAATCCCCTCCTCTCCGAATCCACCCAGTTCTGCCTGATCTACGACGACGGCCCCAAGTCCAAGCTCACCAAGGACCAAATCGACAAGAGGATCAAAACCCACAACTTACCCATCACCAAAACACTCAAGCTCTCCAAGCTCAAATCCGATTACAAGTCTTTTGAGGCCAAGCGGAAGCTGATGGAGTCGTACGATGCGTTTCTGGCTGATAAGCAGATTGTGCCGTTGCTTCCCAGGCTTCTGGGGAAGCAGTTCTTCAAGAAGAAGAGGATGATTCCGGTGCCGGTGGACTTGCAACAGAAGAACTGGAAGGAGCAGGTGGATAGGGTTATCGAGTCGGCCATGTTGTTCTTGAGTACTGGGACTTGTAGTGTTGTGAGGGTGGCCAGGACTTCGATGAGTGCTGAGCAGATTGTTGAGAATGTGGTTGCCGCGGTTGATGGGATTGTGGAGATTGTTCCGAGGAATTGGGGCGGTGTGAGGTCGTTTCATTTGAAGCTGTTGGAGTCACTTGCGCTGCCGGTGTATCAGGCTGTGCCGGATGAGACATTGTTGAAGATTGAGGGAGTTAAGGGGAGCGAGAAAGAGGTGGTGAAGAATGAGAAAGTGGGTAAGAAGAAGGGTAGGATTAGTGAAGTGAGGTATATGGATAGAAATGTTGGGGAGGTGCTTGATGAGGATGAGTTAAATGATGGTGTCATTGTCGACAAGGAGAAGAGGAAGAGTGAAGAAGCAAAGCTGAAGAAAGCTAAGAGGAGTAAGAATGCAGCAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0033612 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0070647 GO:0070696 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KAP U-box

Protein Analysis

333

Amino Acids

37.48

Weight (kDa)

9.64

Isoelectric Point (pI)

31.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L1	PF00687	49 - 245	4.2e-44	Ribosomal protein L1p/L10e family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001789)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24330 AT1G24330 AT1G27910 AT1G67530 AT1G67530 AT1G67530 AT1G67530
fragaria_vesca	FvH4_4g24030 FvH4_4g24030 FvH4_4g24030
malus_domestica	MD16G1116600.v1.1
prunus_persica	Prupe.1G229500_v2.0.a1 Prupe.1G229500_v2.0.a1 Prupe.1G229500_v2.0.a1 Prupe.1G229500_v2.0.a1 Prupe.1G229500_v2.0.a1
pyrus_communis	pycom13g10100 pycom16g09990
rosa_chinensis	RchiOBHm_Chr4g0430741 RchiOBHm_Chr7g0222371 RchiOBHm_Chr7g0222381
rosa_laevigata	RLG00000002065 RLG00000002066 RLG00000006953
rosa_multiflora	Rmu_co8254499.1_g000001 Rmu_sc0008769.1_g000015 Rmu_sc0030350.1_g000001 Rmu_sc0034402.1_g000003
rosa_roxburghii	Rroxscaffold_3G00237030 Rroxscaffold_5G00372450
rosa_rugosa	Rorug04G0245300 Rorug04G0245300 Rorug04G0245400 Rorug04G0245500 Rorug07G0207800
rosa_samantha	Rh4AG301500 Rh4BG309400 Rh4CG326100 Rh4DG306400 Rh7AG350300 Rh7BG340600 Rh7BG340700 Rh7CG367800 Rh7DG346500 Rh7DG346600
rosa_wichuraiana	Rw4G026200 Rw7G029570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	532
Acc36I	ACCTGC	1 cut(s)	532
AccB1I	GGYRCC	1 cut(s)	505
AccI	GTMKAC	1 cut(s)	930
AccII	CGCG	3 cut(s)	8, 198, 659
AciI	CCGC	6 cut(s)	6, 15, 397, 657, 659, 699
AclWI	GGATC	1 cut(s)	323
AcoI	YGGCCR	3 cut(s)	3, 564, 609
AcsI	RAATTY	2 cut(s)	103, 149
AcuI	CTGAAG	1 cut(s)	986
AfaI	GTAC	2 cut(s)	416, 583
AfiI	CCNNNNNNNGG	2 cut(s)	190, 191
AgsI	TTSAA	4 cut(s)	211, 484, 721, 781
AjnI	CCWGG	2 cut(s)	458, 611
AluBI	AGCT	8 cut(s)	20, 289, 355, 364, 403, 724, 964, 974
AluI	AGCT	8 cut(s)	20, 289, 355, 364, 403, 724, 964, 974
Alw26I	GTCTC	1 cut(s)	764
AlwI	GGATC	1 cut(s)	323
AoxI	GGCC	5 cut(s)	3, 274, 390, 564, 609
ApeKI	GCWGC	3 cut(s)	17, 742, 992
ApoI	RAATTY	2 cut(s)	103, 149
Asp700I	GAANNNNTTC	1 cut(s)	476
AspLEI	GCGC	1 cut(s)	742
AspS9I	GGNCC	2 cut(s)	275, 298
AsuHPI	GGTGA	5 cut(s)	145, 160, 283, 331, 829
AvaII	GGWCC	1 cut(s)	298
BalI	TGGCCA	1 cut(s)	611
BanI	GGYRCC	1 cut(s)	505
BbvI	GCAGC	2 cut(s)	29, 729
BccI	CCATC	4 cut(s)	344, 400, 659, 911
BceAI	ACGGC	3 cut(s)	62, 289, 433
BciT130I	CCWGG	2 cut(s)	460, 613
BcoDI	GTCTC	1 cut(s)	764
BfuAI	ACCTGC	1 cut(s)	532
BisI	GCNGC	5 cut(s)	6, 18, 657, 743, 993
BlpI	GCTNAGC	1 cut(s)	630
BlsI	GCNGC	5 cut(s)	7, 19, 658, 744, 994
BmcAI	AGTACT	1 cut(s)	583
Bme1390I	CCNGG	2 cut(s)	460, 613
Bme18I	GGWCC	1 cut(s)	298
BmgT120I	GGNCC	2 cut(s)	275, 298
BmiI	GGNNCC	2 cut(s)	277, 507
BmrFI	CCNGG	2 cut(s)	460, 613
BmrI	ACTGGG	2 cut(s)	244, 594
BmsI	GCATC	1 cut(s)	409
BmuI	ACTGGG	2 cut(s)	244, 594
Bpu1102I	GCTNAGC	1 cut(s)	630
BpuEI	CTTGAG	3 cut(s)	158, 335, 598
BsaJI	CCNNGG	4 cut(s)	294, 458, 657, 686
BsaWI	WCCGGW	1 cut(s)	502
BsaXI	ACNNNNNCTCC	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	2 cut(s)	190, 191
Bse118I	RCCGGY	2 cut(s)	508, 745
Bse1I	ACTGG	3 cut(s)	250, 536, 589
BseBI	CCWGG	2 cut(s)	460, 613
BseDI	CCNNGG	4 cut(s)	294, 458, 657, 686
BseGI	GGATG	3 cut(s)	501, 772, 910
BseLI	CCNNNNNNNGG	2 cut(s)	190, 191
BseMII	CTCAG	1 cut(s)	621
BseNI	ACTGG	3 cut(s)	250, 536, 589
BseRI	GAGGAG	5 cut(s)	12, 80, 130, 224, 994
BseXI	GCAGC	2 cut(s)	29, 729
Bsh1236I	CGCG	3 cut(s)	8, 198, 659
BshFI	GGCC	5 cut(s)	5, 276, 392, 566, 611
BshNI	GGYRCC	1 cut(s)	505
BsiSI	CCGG	4 cut(s)	503, 509, 746, 764
BsiWI	CGTACG	1 cut(s)	414
BslFI	GGGAC	1 cut(s)	601
BslI	CCNNNNNNNGG	2 cut(s)	190, 191
BsmAI	GTCTC	1 cut(s)	764
BsmFI	GGGAC	1 cut(s)	601
BsmI	GAATGC	1 cut(s)	994
BsnI	GGCC	5 cut(s)	5, 276, 392, 566, 611
Bsp143I	GATC	3 cut(s)	127, 261, 315
Bsp1720I	GCTNAGC	1 cut(s)	630
BspACI	CCGC	6 cut(s)	6, 15, 397, 657, 659, 699
BspANI	GGCC	5 cut(s)	5, 276, 392, 566, 611
BspCNI	CTCAG	1 cut(s)	622
BspFNI	CGCG	3 cut(s)	8, 198, 659
BspLI	GGNNCC	2 cut(s)	277, 507
BspMI	ACCTGC	1 cut(s)	532
BspPI	GGATC	1 cut(s)	323
BspT107I	GGYRCC	1 cut(s)	505
BsrFI	RCCGGY	2 cut(s)	508, 745
BsrI	ACTGG	3 cut(s)	250, 536, 589
BssAI	RCCGGY	2 cut(s)	508, 745
BssECI	CCNNGG	4 cut(s)	294, 458, 657, 686
BssMI	GATC	3 cut(s)	127, 261, 315
BssT1I	CCWWGG	1 cut(s)	294
Bst2UI	CCWGG	2 cut(s)	460, 613
Bst4CI	ACNGT	1 cut(s)	67
Bst6I	CTCTTC	3 cut(s)	485, 935, 941
BstAPI	GCANNNNNTGC	1 cut(s)	445
BstDEI	CTNAG	3 cut(s)	133, 630, 975
BstDSI	CCRYGG	1 cut(s)	657
BstF5I	GGATG	3 cut(s)	501, 772, 910
BstFNI	CGCG	3 cut(s)	8, 198, 659
BstHHI	GCGC	1 cut(s)	742
BstKTI	GATC	3 cut(s)	130, 264, 318
BstMAI	GTCTC	1 cut(s)	764
BstMBI	GATC	3 cut(s)	127, 261, 315
BstMWI	GCNNNNNNNGC	6 cut(s)	14, 83, 361, 428, 445, 460
BstNI	CCWGG	2 cut(s)	460, 613
BstSCI	CCNGG	2 cut(s)	458, 611
BstUI	CGCG	3 cut(s)	8, 198, 659
BstV1I	GCAGC	2 cut(s)	29, 729
BstXI	CCANNNNNNTGG	1 cut(s)	466
BsuRI	GGCC	5 cut(s)	5, 276, 392, 566, 611
BtgI	CCRYGG	1 cut(s)	657
BtsCI	GGATG	3 cut(s)	501, 772, 910
BveI	ACCTGC	1 cut(s)	532
CfoI	GCGC	1 cut(s)	742
Cfr10I	RCCGGY	2 cut(s)	508, 745
Cfr13I	GGNCC	2 cut(s)	275, 298
Cfr42I	CCGCGG	1 cut(s)	660
CseI	GACGC	1 cut(s)	187
Csp6I	GTAC	2 cut(s)	415, 582
CviAII	CATG	1 cut(s)	568
CviQI	GTAC	2 cut(s)	415, 582
DdeI	CTNAG	3 cut(s)	133, 630, 975
DpnI	GATC	3 cut(s)	129, 263, 317
DpnII	GATC	3 cut(s)	127, 261, 315
EaeI	YGGCCR	3 cut(s)	3, 564, 609
Eam1104I	CTCTTC	3 cut(s)	485, 935, 941
EarI	CTCTTC	3 cut(s)	485, 935, 941
Eco130I	CCWWGG	1 cut(s)	294
Eco47I	GGWCC	1 cut(s)	298
Eco57I	CTGAAG	1 cut(s)	986
EcoRI	GAATTC	1 cut(s)	149
EcoRII	CCWGG	2 cut(s)	458, 611
EcoT14I	CCWWGG	1 cut(s)	294
ErhI	CCWWGG	1 cut(s)	294
FaeI	CATG	1 cut(s)	571
FaiI	YATR	3 cut(s)	569, 870, 872
FalI	AAGNNNNNCTT	2 cut(s)	464, 496
FaqI	GGGAC	1 cut(s)	601
FatI	CATG	1 cut(s)	567
FblI	GTMKAC	1 cut(s)	930
Fnu4HI	GCNGC	5 cut(s)	6, 18, 657, 743, 993
FokI	GGATG	3 cut(s)	508, 779, 917
Fsp4HI	GCNGC	5 cut(s)	6, 18, 657, 743, 993
GlaI	GCGC	1 cut(s)	741
GluI	GCNGC	5 cut(s)	6, 18, 657, 743, 993
HaeIII	GGCC	5 cut(s)	5, 276, 392, 566, 611
HapII	CCGG	4 cut(s)	503, 509, 746, 764
HgaI	GACGC	1 cut(s)	187
HhaI	GCGC	1 cut(s)	742
Hin1II	CATG	1 cut(s)	571
Hin6I	GCGC	1 cut(s)	740
HinP1I	GCGC	1 cut(s)	740
HincII	GTYRAC	2 cut(s)	202, 931
HindII	GTYRAC	2 cut(s)	202, 931
HinfI	GANTC	6 cut(s)	137, 242, 410, 499, 560, 731
HpaII	CCGG	4 cut(s)	503, 509, 746, 764
HphI	GGTGA	5 cut(s)	145, 160, 283, 331, 829
Hpy166II	GTNNAC	3 cut(s)	202, 514, 931
Hpy188I	TCNGA	4 cut(s)	145, 241, 373, 687
Hpy188III	TCNNGA	3 cut(s)	175, 484, 577
Hpy8I	GTNNAC	3 cut(s)	202, 514, 931
Hpy99I	CGWCG	4 cut(s)	128, 149, 272, 275
HpyAV	CCTTC	4 cut(s)	39, 217, 529, 838
HpyCH4III	ACNGT	1 cut(s)	67
HpyCH4V	TGCA	2 cut(s)	520, 992
HpyF10VI	GCNNNNNNNGC	6 cut(s)	14, 83, 361, 428, 445, 460
HpyF3I	CTNAG	3 cut(s)	133, 630, 975
Hsp92II	CATG	1 cut(s)	571
HspAI	GCGC	1 cut(s)	740
KspI	CCGCGG	1 cut(s)	660
Kzo9I	GATC	3 cut(s)	127, 261, 315
LmnI	GCTCC	3 cut(s)	25, 538, 801
Lsp1109I	GCAGC	2 cut(s)	29, 729
LweI	GCATC	1 cut(s)	409
MaeIII	GTNAC	1 cut(s)	732
MalI	GATC	3 cut(s)	129, 263, 317
MboI	GATC	3 cut(s)	127, 261, 315
MlsI	TGGCCA	1 cut(s)	611
MluCI	AATT	3 cut(s)	103, 149, 691
MluNI	TGGCCA	1 cut(s)	611
MlyI	GAGTC	4 cut(s)	131, 419, 569, 740
MmeI	TCCRAC	2 cut(s)	168, 708
Mox20I	TGGCCA	1 cut(s)	611
MroXI	GAANNNNTTC	1 cut(s)	476
MscI	TGGCCA	1 cut(s)	611
MseI	TTAA	2 cut(s)	795, 911
Msp20I	TGGCCA	1 cut(s)	611
MspA1I	CMGCKG	1 cut(s)	659
MspI	CCGG	4 cut(s)	503, 509, 746, 764
MspR9I	CCNGG	2 cut(s)	460, 613
Mva1269I	GAATGC	1 cut(s)	994
MvaI	CCWGG	2 cut(s)	460, 613
MvnI	CGCG	3 cut(s)	8, 198, 659
MwoI	GCNNNNNNNGC	6 cut(s)	14, 83, 361, 428, 445, 460
NdeII	GATC	3 cut(s)	127, 261, 315
NlaIII	CATG	1 cut(s)	571
NlaIV	GGNNCC	2 cut(s)	277, 507
NmuCI	GTSAC	1 cut(s)	732
PaqCI	CACCTGC	1 cut(s)	532
PcsI	WCGNNNNNNNCGW	1 cut(s)	419
PctI	GAATGC	1 cut(s)	994
PdmI	GAANNNNTTC	1 cut(s)	476
PfeI	GAWTC	2 cut(s)	242, 499
Pfl23II	CGTACG	1 cut(s)	414
PkrI	GCNGC	5 cut(s)	7, 19, 658, 744, 994
PleI	GAGTC	4 cut(s)	131, 418, 568, 739
PpsI	GAGTC	4 cut(s)	131, 418, 568, 739
Psp6I	CCWGG	2 cut(s)	458, 611
PspGI	CCWGG	2 cut(s)	458, 611
PspLI	CGTACG	1 cut(s)	414
PspN4I	GGNNCC	2 cut(s)	277, 507
PspPI	GGNCC	2 cut(s)	275, 298
RsaI	GTAC	2 cut(s)	416, 583
RsaNI	GTAC	2 cut(s)	415, 582
SacII	CCGCGG	1 cut(s)	660
SalI	GTCGAC	1 cut(s)	929
SaqAI	TTAA	2 cut(s)	795, 911
SatI	GCNGC	5 cut(s)	6, 18, 657, 743, 993
Sau3AI	GATC	3 cut(s)	127, 261, 315
Sau96I	GGNCC	2 cut(s)	275, 298
ScaI	AGTACT	1 cut(s)	583
SchI	GAGTC	4 cut(s)	131, 419, 569, 740
ScrFI	CCNGG	2 cut(s)	460, 613
SfaNI	GCATC	1 cut(s)	409
Sfr303I	CCGCGG	1 cut(s)	660
SgrBI	CCGCGG	1 cut(s)	660
SinI	GGWCC	1 cut(s)	298
SmlI	CTYRAG	3 cut(s)	173, 350, 577
SmoI	CTYRAG	3 cut(s)	173, 350, 577
Sse9I	AATT	3 cut(s)	103, 149, 691
SsiI	CCGC	6 cut(s)	6, 15, 397, 657, 659, 699
StyD4I	CCNGG	2 cut(s)	458, 611
StyI	CCWWGG	1 cut(s)	294
TaaI	ACNGT	1 cut(s)	67
TaqI	TCGA	4 cut(s)	306, 558, 620, 930
TasI	AATT	3 cut(s)	103, 149, 691
TatI	WGTACW	1 cut(s)	581
TauI	GCSGC	2 cut(s)	8, 659
TfiI	GAWTC	2 cut(s)	242, 499
Tru1I	TTAA	2 cut(s)	795, 911
Tru9I	TTAA	2 cut(s)	795, 911
TseFI	GTSAC	1 cut(s)	732
TseI	GCWGC	3 cut(s)	17, 742, 992
Tsp45I	GTSAC	1 cut(s)	732
TspDTI	ATGAA	1 cut(s)	704
VpaK11BI	GGWCC	1 cut(s)	298
XapI	RAATTY	2 cut(s)	103, 149
XmiI	GTMKAC	1 cut(s)	930
XmnI	GAANNNNTTC	1 cut(s)	476
ZrmI	AGTACT	1 cut(s)	583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.