RLG00000004687

DnaJ central domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0006961
Physical Location & Seq
Reverse (-)
61446448 .. 61447124
677 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004687

Sequence Viewer

Length: 471 bp
ATGGATTGGCAGAGAGCTCCAAAGAAAAGCGATAGCCGTAGGAACTACTATGACATCCTTGAAGTGCCTAAGAATTCTTCACAAGATGATCTGAAAAAGGCTTATAGAAGGGCAGCCATGAAGCACCATCCCGATAAGGGTGGTGATGTAGAAAAGTTCAAAGAGTTGGGCCATGCATACAAGGTTCTGAGAGATCCACAGCAACGTGTCATCTATGACCGGGACGGTGAGGATCAGTTCGGCGAGGACATGTACGATGAGGACCGATATGGCAAGGACCAGTACAACGAGGACCAATACGGTGAGTACAAGTCCAGCCAGAACAGATACGGTCAGGACTGGTACGGGAATCGGTACGACCAGGGCTGGTACGGCCAGAACCGGTATGGTAAGGAAAAGTATAGCAAGGACCGAGATCAGACTGGCGAGCAAAGGGACGTAGTTAGAGTAATCTGCTTACTGCTTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

157

Amino Acids

18.81

Weight (kDa)

6.32

Isoelectric Point (pI)

35.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 15 - 73 1.2e-21 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 188, 240
AcoI YGGCCR 1 cut(s) 373
AcsI RAATTY 1 cut(s) 73
AfaI GTAC 6 cut(s) 254, 284, 308, 344, 356, 371
AfiI CCNNNNNNNGG 1 cut(s) 137
AflIII ACRYGT 2 cut(s) 205, 249
AgeI ACCGGT 1 cut(s) 381
AgsI TTSAA 2 cut(s) 62, 160
AjnI CCWGG 1 cut(s) 360
AluBI AGCT 1 cut(s) 17
AluI AGCT 1 cut(s) 17
Alw21I GWGCWC 1 cut(s) 19
AlwI GGATC 2 cut(s) 188, 240
AoxI GGCC 2 cut(s) 169, 373
ApeKI GCWGC 1 cut(s) 113
ApoI RAATTY 1 cut(s) 73
AsiGI ACCGGT 1 cut(s) 381
AspS9I GGNCC 5 cut(s) 169, 262, 277, 292, 409
AsuC2I CCSGG 1 cut(s) 221
AsuHPI GGTGA 3 cut(s) 155, 239, 314
AvaII GGWCC 4 cut(s) 262, 277, 292, 409
BanII GRGCYC 1 cut(s) 19
Bbv12I GWGCWC 1 cut(s) 19
BbvI GCAGC 1 cut(s) 125
BccI CCATC 1 cut(s) 135
BceAI ACGGC 2 cut(s) 21, 388
BciT130I CCWGG 1 cut(s) 362
BcnI CCSGG 1 cut(s) 221
BisI GCNGC 1 cut(s) 114
BlsI GCNGC 1 cut(s) 115
Bme1390I CCNGG 2 cut(s) 221, 362
Bme18I GGWCC 4 cut(s) 262, 277, 292, 409
BmgT120I GGNCC 5 cut(s) 169, 262, 277, 292, 409
BmrFI CCNGG 2 cut(s) 221, 362
BpuMI CCSGG 1 cut(s) 221
BsaJI CCNNGG 1 cut(s) 361
BsaWI WCCGGW 1 cut(s) 381
Bsc4I CCNNNNNNNGG 1 cut(s) 137
Bse118I RCCGGY 1 cut(s) 381
Bse1I ACTGG 3 cut(s) 280, 344, 427
BseBI CCWGG 1 cut(s) 362
BseDI CCNNGG 1 cut(s) 361
BseGI GGATG 2 cut(s) 54, 127
BseLI CCNNNNNNNGG 1 cut(s) 137
BseMII CTCAG 1 cut(s) 179
BseNI ACTGG 3 cut(s) 280, 344, 427
BseXI GCAGC 1 cut(s) 125
BshFI GGCC 2 cut(s) 171, 375
BshTI ACCGGT 1 cut(s) 381
BsiHKAI GWGCWC 1 cut(s) 19
BsiSI CCGG 2 cut(s) 220, 382
BslFI GGGAC 2 cut(s) 236, 449
BslI CCNNNNNNNGG 1 cut(s) 137
BsmFI GGGAC 2 cut(s) 236, 449
BsnI GGCC 2 cut(s) 171, 375
Bsp1286I GDGCHC 1 cut(s) 19
Bsp143I GATC 4 cut(s) 88, 193, 232, 415
BspANI GGCC 2 cut(s) 171, 375
BspCNI CTCAG 1 cut(s) 180
BspPI GGATC 2 cut(s) 188, 240
BsrFI RCCGGY 1 cut(s) 381
BsrI ACTGG 3 cut(s) 280, 344, 427
BssAI RCCGGY 1 cut(s) 381
BssECI CCNNGG 1 cut(s) 361
BssMI GATC 4 cut(s) 88, 193, 232, 415
Bst2UI CCWGG 1 cut(s) 362
Bst4CI ACNGT 3 cut(s) 227, 302, 332
BstC8I GCNNGC 2 cut(s) 428, 465
BstDEI CTNAG 3 cut(s) 69, 188, 468
BstF5I GGATG 2 cut(s) 54, 127
BstKTI GATC 4 cut(s) 91, 196, 235, 418
BstMBI GATC 4 cut(s) 88, 193, 232, 415
BstMWI GCNNNNNNNGC 1 cut(s) 372
BstNI CCWGG 1 cut(s) 362
BstNSI RCATGY 1 cut(s) 253
BstSCI CCNGG 2 cut(s) 219, 360
BstV1I GCAGC 1 cut(s) 125
BstX2I RGATCY 1 cut(s) 193
BstYI RGATCY 1 cut(s) 193
BsuRI GGCC 2 cut(s) 171, 375
BtsCI GGATG 2 cut(s) 54, 127
Cac8I GCNNGC 2 cut(s) 428, 465
Cfr10I RCCGGY 1 cut(s) 381
Cfr13I GGNCC 5 cut(s) 169, 262, 277, 292, 409
Csp6I GTAC 6 cut(s) 253, 283, 307, 343, 355, 370
CspAI ACCGGT 1 cut(s) 381
CviAII CATG 3 cut(s) 118, 173, 250
CviJI RGCY 8 cut(s) 17, 36, 101, 116, 171, 318, 366, 375
CviKI_1 RGCY 8 cut(s) 17, 36, 101, 116, 171, 318, 366, 375
CviQI GTAC 6 cut(s) 253, 283, 307, 343, 355, 370
DdeI CTNAG 3 cut(s) 69, 188, 468
DpnI GATC 4 cut(s) 90, 195, 234, 417
DpnII GATC 4 cut(s) 88, 193, 232, 415
EaeI YGGCCR 1 cut(s) 373
Ecl136II GAGCTC 1 cut(s) 17
Eco24I GRGCYC 1 cut(s) 19
Eco47I GGWCC 4 cut(s) 262, 277, 292, 409
Eco53kI GAGCTC 1 cut(s) 17
EcoICRI GAGCTC 1 cut(s) 17
EcoRI GAATTC 1 cut(s) 73
EcoRII CCWGG 1 cut(s) 360
EcoT22I ATGCAT 1 cut(s) 178
EcoT38I GRGCYC 1 cut(s) 19
FaeI CATG 3 cut(s) 121, 176, 253
FaqI GGGAC 2 cut(s) 236, 449
FatI CATG 3 cut(s) 117, 172, 249
Fnu4HI GCNGC 1 cut(s) 114
FokI GGATG 2 cut(s) 41, 114
FriOI GRGCYC 1 cut(s) 19
Fsp4HI GCNGC 1 cut(s) 114
GluI GCNGC 1 cut(s) 114
HaeIII GGCC 2 cut(s) 171, 375
HapII CCGG 2 cut(s) 220, 382
Hin1II CATG 3 cut(s) 121, 176, 253
HinfI GANTC 1 cut(s) 349
HpaII CCGG 2 cut(s) 220, 382
HphI GGTGA 3 cut(s) 155, 239, 314
Hpy188I TCNGA 3 cut(s) 93, 189, 420
Hpy188III TCNNGA 2 cut(s) 131, 335
HpyAV CCTTC 1 cut(s) 102
HpyCH4III ACNGT 3 cut(s) 227, 302, 332
HpyCH4IV ACGT 2 cut(s) 205, 438
HpyCH4V TGCA 1 cut(s) 176
HpyF10VI GCNNNNNNNGC 1 cut(s) 372
HpyF3I CTNAG 3 cut(s) 69, 188, 468
HpySE526I ACGT 2 cut(s) 205, 438
Hsp92II CATG 3 cut(s) 121, 176, 253
Kzo9I GATC 4 cut(s) 88, 193, 232, 415
LmnI GCTCC 1 cut(s) 22
Lsp1109I GCAGC 1 cut(s) 125
MaeII ACGT 2 cut(s) 205, 438
MalI GATC 4 cut(s) 90, 195, 234, 417
MboI GATC 4 cut(s) 88, 193, 232, 415
MboII GAAGA 1 cut(s) 69
MflI RGATCY 1 cut(s) 193
MhlI GDGCHC 1 cut(s) 19
MluCI AATT 1 cut(s) 73
MnlI CCTC 4 cut(s) 223, 238, 253, 283
Mph1103I ATGCAT 1 cut(s) 178
MspI CCGG 2 cut(s) 220, 382
MspR9I CCNGG 2 cut(s) 221, 362
MvaI CCWGG 1 cut(s) 362
MwoI GCNNNNNNNGC 1 cut(s) 372
NciI CCSGG 1 cut(s) 221
NdeII GATC 4 cut(s) 88, 193, 232, 415
NlaIII CATG 3 cut(s) 121, 176, 253
NsiI ATGCAT 1 cut(s) 178
NspI RCATGY 1 cut(s) 253
PciI ACATGT 1 cut(s) 249
PfeI GAWTC 1 cut(s) 349
PinAI ACCGGT 1 cut(s) 381
PkrI GCNGC 1 cut(s) 115
PscI ACATGT 1 cut(s) 249
Psp124BI GAGCTC 1 cut(s) 19
Psp6I CCWGG 1 cut(s) 360
PspGI CCWGG 1 cut(s) 360
PspPI GGNCC 5 cut(s) 169, 262, 277, 292, 409
PsuI RGATCY 1 cut(s) 193
RsaI GTAC 6 cut(s) 254, 284, 308, 344, 356, 371
RsaNI GTAC 6 cut(s) 253, 283, 307, 343, 355, 370
SacI GAGCTC 1 cut(s) 19
SatI GCNGC 1 cut(s) 114
Sau3AI GATC 4 cut(s) 88, 193, 232, 415
Sau96I GGNCC 5 cut(s) 169, 262, 277, 292, 409
ScrFI CCNGG 2 cut(s) 221, 362
SduI GDGCHC 1 cut(s) 19
SetI ASST 4 cut(s) 19, 186, 208, 441
SinI GGWCC 4 cut(s) 262, 277, 292, 409
Sse9I AATT 1 cut(s) 73
SstI GAGCTC 1 cut(s) 19
StyD4I CCNGG 2 cut(s) 219, 360
TaaI ACNGT 3 cut(s) 227, 302, 332
TaiI ACGT 2 cut(s) 208, 441
TaqII GACCGA 2 cut(s) 279, 426
TasI AATT 1 cut(s) 73
TatI WGTACW 2 cut(s) 282, 306
TfiI GAWTC 1 cut(s) 349
TseI GCWGC 1 cut(s) 113
TspDTI ATGAA 1 cut(s) 134
VpaK11BI GGWCC 4 cut(s) 262, 277, 292, 409
XapI RAATTY 1 cut(s) 73
XceI RCATGY 1 cut(s) 253
XcmI CCANNNNNNNNNTGG 1 cut(s) 383
Zsp2I ATGCAT 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.