Rh7BG097600

DnaJ central domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0006961
Physical Location & Seq
Forward (+)
7204901 .. 7213715
8815 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG097600.1

Sequence Viewer

Length: 600 bp
ATGGATTGGCAGAGAGCTCCAAAGAAAAGCGATAGCCGTAGGAACTACTATGACATCCTTGAAGTACCTAAGAATTCTTCACAAGATGATCTGAAAAAGGCTTATAGAAGAGCAGCCATGAAGCACCATCCCGATAAGGGTGGTGATGTAGAAAAGTTCAAAGAGTTGGGCCATGCATACAAGGTTCTGAGCGATCCACAGCAACGTGTCATCTATGACCGGGACGGTGAGGATCAGTTCGGCGAGGACATGTACGGTGAGGACCGGTATGGCAAGGACCAGTACAACGAGGACCAATACGGTGAGTACAAGTACAGCCAGAACAGATACGGTCAGGACTGGTACTGGTACGGTTCGAACCAATACGGTCAGGACTGGTACGGGAATCGGTACGACCAGGGCTGGTACGGCCAGAACCGGTGTGGTAAGGAAAAGTATAGCAAGGACCGAGATCAGACTGGCGAGCAAAGGGATGTAGTTAGACTAGCAGAGATTCAGCATGGATATATATCTAGCTTGGAAAACAACATTTCTTTGGCTACAATAACAAAAGAGAGGCTTAAATTTCCTCCACCAGATCGAAAACCTTCCTCTGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

199

Amino Acids

23.72

Weight (kDa)

6.45

Isoelectric Point (pI)

31.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 15 - 73 3.8e-22 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 188, 240
AcoI YGGCCR 1 cut(s) 409
AcsI RAATTY 2 cut(s) 73, 563
AfiI CCNNNNNNNGG 1 cut(s) 137
AflIII ACRYGT 2 cut(s) 205, 249
AgeI ACCGGT 2 cut(s) 264, 417
AgsI TTSAA 2 cut(s) 62, 160
AjnI CCWGG 1 cut(s) 396
AluBI AGCT 2 cut(s) 17, 516
AluI AGCT 2 cut(s) 17, 516
Alw21I GWGCWC 1 cut(s) 19
AlwI GGATC 2 cut(s) 188, 240
AoxI GGCC 2 cut(s) 169, 409
ApeKI GCWGC 1 cut(s) 113
ApoI RAATTY 2 cut(s) 73, 563
AsiGI ACCGGT 2 cut(s) 264, 417
Asp700I GAANNNNTTC 1 cut(s) 586
AspS9I GGNCC 5 cut(s) 169, 262, 277, 292, 445
AsuC2I CCSGG 1 cut(s) 221
AsuHPI GGTGA 4 cut(s) 155, 239, 269, 314
AsuII TTCGAA 1 cut(s) 356
AvaII GGWCC 4 cut(s) 262, 277, 292, 445
BanII GRGCYC 1 cut(s) 19
Bbv12I GWGCWC 1 cut(s) 19
BbvI GCAGC 1 cut(s) 125
BccI CCATC 1 cut(s) 135
BceAI ACGGC 2 cut(s) 21, 424
BciT130I CCWGG 1 cut(s) 398
BcnI CCSGG 1 cut(s) 221
BfaI CTAG 2 cut(s) 485, 513
BisI GCNGC 1 cut(s) 114
BlsI GCNGC 1 cut(s) 115
Bme1390I CCNGG 2 cut(s) 221, 398
Bme18I GGWCC 4 cut(s) 262, 277, 292, 445
BmgT120I GGNCC 5 cut(s) 169, 262, 277, 292, 445
BmrFI CCNGG 2 cut(s) 221, 398
Bpu14I TTCGAA 1 cut(s) 356
BpuMI CCSGG 1 cut(s) 221
BsaBI GATNNNNATC 1 cut(s) 508
BsaJI CCNNGG 1 cut(s) 397
BsaWI WCCGGW 2 cut(s) 264, 417
Bsc4I CCNNNNNNNGG 1 cut(s) 137
Bse118I RCCGGY 2 cut(s) 264, 417
Bse1I ACTGG 5 cut(s) 280, 344, 350, 380, 463
Bse8I GATNNNNATC 1 cut(s) 508
BseBI CCWGG 1 cut(s) 398
BseDI CCNNGG 1 cut(s) 397
BseGI GGATG 3 cut(s) 54, 127, 478
BseJI GATNNNNATC 1 cut(s) 508
BseLI CCNNNNNNNGG 1 cut(s) 137
BseMII CTCAG 1 cut(s) 179
BseNI ACTGG 5 cut(s) 280, 344, 350, 380, 463
BseXI GCAGC 1 cut(s) 125
BshFI GGCC 2 cut(s) 171, 411
BshTI ACCGGT 2 cut(s) 264, 417
BsiHKAI GWGCWC 1 cut(s) 19
BsiSI CCGG 3 cut(s) 220, 265, 418
BslFI GGGAC 1 cut(s) 236
BslI CCNNNNNNNGG 1 cut(s) 137
BsmFI GGGAC 1 cut(s) 236
BsnI GGCC 2 cut(s) 171, 411
Bsp119I TTCGAA 1 cut(s) 356
Bsp1286I GDGCHC 1 cut(s) 19
Bsp143I GATC 5 cut(s) 88, 193, 232, 451, 577
BspANI GGCC 2 cut(s) 171, 411
BspCNI CTCAG 1 cut(s) 180
BspPI GGATC 2 cut(s) 188, 240
BspQI GCTCTTC 1 cut(s) 103
BspT104I TTCGAA 1 cut(s) 356
BsrFI RCCGGY 2 cut(s) 264, 417
BsrI ACTGG 5 cut(s) 280, 344, 350, 380, 463
BssAI RCCGGY 2 cut(s) 264, 417
BssECI CCNNGG 1 cut(s) 397
BssMI GATC 5 cut(s) 88, 193, 232, 451, 577
Bst2UI CCWGG 1 cut(s) 398
Bst4CI ACNGT 6 cut(s) 227, 257, 302, 332, 353, 368
Bst6I CTCTTC 1 cut(s) 103
BstBI TTCGAA 1 cut(s) 356
BstC8I GCNNGC 1 cut(s) 464
BstDEI CTNAG 2 cut(s) 69, 188
BstF5I GGATG 3 cut(s) 54, 127, 478
BstKTI GATC 5 cut(s) 91, 196, 235, 454, 580
BstMBI GATC 5 cut(s) 88, 193, 232, 451, 577
BstMWI GCNNNNNNNGC 1 cut(s) 408
BstNI CCWGG 1 cut(s) 398
BstNSI RCATGY 1 cut(s) 253
BstSCI CCNGG 2 cut(s) 219, 396
BstV1I GCAGC 1 cut(s) 125
BsuRI GGCC 2 cut(s) 171, 411
BtsCI GGATG 3 cut(s) 54, 127, 478
Cac8I GCNNGC 1 cut(s) 464
Cfr10I RCCGGY 2 cut(s) 264, 417
Cfr13I GGNCC 5 cut(s) 169, 262, 277, 292, 445
CspAI ACCGGT 2 cut(s) 264, 417
CviAII CATG 4 cut(s) 118, 173, 250, 500
DdeI CTNAG 2 cut(s) 69, 188
DpnI GATC 5 cut(s) 90, 195, 234, 453, 579
DpnII GATC 5 cut(s) 88, 193, 232, 451, 577
EaeI YGGCCR 1 cut(s) 409
Eam1104I CTCTTC 1 cut(s) 103
EarI CTCTTC 1 cut(s) 103
Ecl136II GAGCTC 1 cut(s) 17
Eco24I GRGCYC 1 cut(s) 19
Eco47I GGWCC 4 cut(s) 262, 277, 292, 445
Eco53kI GAGCTC 1 cut(s) 17
EcoICRI GAGCTC 1 cut(s) 17
EcoRI GAATTC 1 cut(s) 73
EcoRII CCWGG 1 cut(s) 396
EcoT22I ATGCAT 1 cut(s) 178
EcoT38I GRGCYC 1 cut(s) 19
FaeI CATG 4 cut(s) 121, 176, 253, 503
FalI AAGNNNNNCTT 2 cut(s) 543, 575
FaqI GGGAC 1 cut(s) 236
FatI CATG 4 cut(s) 117, 172, 249, 499
Fnu4HI GCNGC 1 cut(s) 114
FokI GGATG 3 cut(s) 41, 114, 485
FriOI GRGCYC 1 cut(s) 19
Fsp4HI GCNGC 1 cut(s) 114
FspBI CTAG 2 cut(s) 485, 513
GluI GCNGC 1 cut(s) 114
HaeIII GGCC 2 cut(s) 171, 411
HapII CCGG 3 cut(s) 220, 265, 418
Hin1II CATG 4 cut(s) 121, 176, 253, 503
HinfI GANTC 2 cut(s) 385, 493
HpaII CCGG 3 cut(s) 220, 265, 418
HphI GGTGA 4 cut(s) 155, 239, 269, 314
Hpy188I TCNGA 3 cut(s) 93, 189, 456
Hpy188III TCNNGA 3 cut(s) 131, 335, 371
HpyAV CCTTC 1 cut(s) 597
HpyCH4III ACNGT 6 cut(s) 227, 257, 302, 332, 353, 368
HpyCH4IV ACGT 1 cut(s) 205
HpyCH4V TGCA 1 cut(s) 176
HpyF10VI GCNNNNNNNGC 1 cut(s) 408
HpyF3I CTNAG 2 cut(s) 69, 188
HpySE526I ACGT 1 cut(s) 205
Hsp92II CATG 4 cut(s) 121, 176, 253, 503
Kzo9I GATC 5 cut(s) 88, 193, 232, 451, 577
LguI GCTCTTC 1 cut(s) 103
LmnI GCTCC 1 cut(s) 22
Lsp1109I GCAGC 1 cut(s) 125
MaeI CTAG 2 cut(s) 485, 513
MaeII ACGT 1 cut(s) 205
MalI GATC 5 cut(s) 90, 195, 234, 453, 579
MboI GATC 5 cut(s) 88, 193, 232, 451, 577
MboII GAAGA 2 cut(s) 69, 120
MhlI GDGCHC 1 cut(s) 19
MluCI AATT 2 cut(s) 73, 563
MnlI CCTC 6 cut(s) 223, 238, 253, 283, 549, 579
Mph1103I ATGCAT 1 cut(s) 178
MroXI GAANNNNTTC 1 cut(s) 586
MseI TTAA 1 cut(s) 561
MspI CCGG 3 cut(s) 220, 265, 418
MspR9I CCNGG 2 cut(s) 221, 398
MvaI CCWGG 1 cut(s) 398
MwoI GCNNNNNNNGC 1 cut(s) 408
NciI CCSGG 1 cut(s) 221
NdeII GATC 5 cut(s) 88, 193, 232, 451, 577
NlaIII CATG 4 cut(s) 121, 176, 253, 503
NsiI ATGCAT 1 cut(s) 178
NspI RCATGY 1 cut(s) 253
NspV TTCGAA 1 cut(s) 356
PciI ACATGT 1 cut(s) 249
PciSI GCTCTTC 1 cut(s) 103
PdmI GAANNNNTTC 1 cut(s) 586
PfeI GAWTC 2 cut(s) 385, 493
PinAI ACCGGT 2 cut(s) 264, 417
PkrI GCNGC 1 cut(s) 115
PscI ACATGT 1 cut(s) 249
Psp124BI GAGCTC 1 cut(s) 19
Psp6I CCWGG 1 cut(s) 396
PspGI CCWGG 1 cut(s) 396
PspPI GGNCC 5 cut(s) 169, 262, 277, 292, 445
SacI GAGCTC 1 cut(s) 19
SapI GCTCTTC 1 cut(s) 103
SaqAI TTAA 1 cut(s) 561
SatI GCNGC 1 cut(s) 114
Sau3AI GATC 5 cut(s) 88, 193, 232, 451, 577
Sau96I GGNCC 5 cut(s) 169, 262, 277, 292, 445
ScrFI CCNGG 2 cut(s) 221, 398
SduI GDGCHC 1 cut(s) 19
SetI ASST 6 cut(s) 19, 70, 186, 208, 518, 589
SfuI TTCGAA 1 cut(s) 356
SinI GGWCC 4 cut(s) 262, 277, 292, 445
Sse9I AATT 2 cut(s) 73, 563
SspMI CTAG 2 cut(s) 485, 513
SstI GAGCTC 1 cut(s) 19
StyD4I CCNGG 2 cut(s) 219, 396
TaaI ACNGT 6 cut(s) 227, 257, 302, 332, 353, 368
TaiI ACGT 1 cut(s) 208
TaqI TCGA 2 cut(s) 356, 580
TaqII GACCGA 1 cut(s) 462
TasI AATT 2 cut(s) 73, 563
TatI WGTACW 3 cut(s) 282, 306, 312
TfiI GAWTC 2 cut(s) 385, 493
Tru1I TTAA 1 cut(s) 561
Tru9I TTAA 1 cut(s) 561
TseI GCWGC 1 cut(s) 113
TspDTI ATGAA 1 cut(s) 134
VpaK11BI GGWCC 4 cut(s) 262, 277, 292, 445
XapI RAATTY 2 cut(s) 73, 563
XceI RCATGY 1 cut(s) 253
XcmI CCANNNNNNNNNTGG 1 cut(s) 419
XmnI GAANNNNTTC 1 cut(s) 586
XspI CTAG 2 cut(s) 485, 513
Zsp2I ATGCAT 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.