Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012200.1

Orthogroup ID

OG0006961

Physical Location & Seq

Genomic Coordinates Reverse (-)

7579 .. 8394

Gene Structure 816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012200.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

atgaaatcacagtgtttcgatcaaaatctccagaaaaatatcaataccaagaagaggtctccttcatatccatttcatcaatcaggaaccaatgtctccttttcacttcaccttctgctccgtcctaaaatcccaccaccacgacatcacccacagaaccttcatggatgccaccataaactgggttcgcgaccgcggcctcaaccacctggtcgagagagaactttggccaatcatcaacatcaagaacctcatcaaatcagagacctccaaatccctccacatttccatcctcaccaaaacccgacactcccttatgattcccacgcgccccgtcgagtttgtccgccaatacccctctattttttaggtaccggcatcactgttctgcctcaggtccccctcaccccgcaagtcctcggtatgttattgttgattgagaaagactctgatcctctgtcggcttcggatggcaccaaaaccgccaactggccgttcgagtcaagtttgggtatgcctatgctccttcaaaggactagggcagcttccaagtctgggtcatcctctgcgagtggctatacggaggagcaggttacgattgcgaggcaattgaagaagaagcaggactgttatgagattttgggggtggagagaagttgtagtgttgaagatgttcaaaaagcttataggaagttgtctttgaaggttcatctggataagaacatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

DUF1977 DnaJ

Protein Analysis

242

Amino Acids

27.36

Weight (kDa)

9.73

Isoelectric Point (pI)

58.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006961)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g11130
rosa_chinensis	RchiOBHm_Chr7g0188521
rosa_laevigata	RLG00000004687 RLG00000004984 RLG00000009366 RLG00000012138 RLG00000034231
rosa_multiflora	Rmu_co8341479.1_g000001 Rmu_sc0000530.1_g000015 Rmu_sc0011602.1_g000002 Rmu_sc0012200.1_g000002
rosa_roxburghii	Rroxscaffold_3G00241950 Rroxscaffold_3G00266340
rosa_rugosa	Rorug06G0491000 Rorug07G0169400 Rorug07G0234800
rosa_samantha	Rh2AG017400 Rh2DG018900 Rh3CG283500 Rh4DG076100 Rh7AG095800 Rh7BG097600 Rh7CG098400 Rh7CG266300 Rh7DG097700 Rh7DG256100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	580
Acc65I	GGTACC	1 cut(s)	371
AccB1I	GGYRCC	2 cut(s)	371, 473
AccB7I	CCANNNNNTGG	1 cut(s)	181
AccII	CGCG	3 cut(s)	190, 196, 329
AciI	CCGC	5 cut(s)	194, 196, 347, 410, 483
AclWI	GGATC	1 cut(s)	446
AcoI	YGGCCR	2 cut(s)	228, 491
AfaI	GTAC	1 cut(s)	373
AfiI	CCNNNNNNNGG	4 cut(s)	54, 181, 489, 555
AflIII	ACRYGT	1 cut(s)	723
AgsI	TTSAA	5 cut(s)	530, 613, 668, 677, 703
AjnI	CCWGG	1 cut(s)	208
AjuI	GAANNNNNNNTTGG	2 cut(s)	479, 511
AluBI	AGCT	2 cut(s)	545, 683
AluI	AGCT	2 cut(s)	545, 683
Alw26I	GTCTC	3 cut(s)	63, 100, 258
AlwI	GGATC	1 cut(s)	446
AoxI	GGCC	3 cut(s)	197, 228, 491
ApeKI	GCWGC	1 cut(s)	542
Asp700I	GAANNNNTTC	1 cut(s)	672
Asp718I	GGTACC	1 cut(s)	371
AspLEI	GCGC	1 cut(s)	331
AspS9I	GGNCC	1 cut(s)	397
AsuHPI	GGTGA	4 cut(s)	101, 140, 287, 397
AvaII	GGWCC	1 cut(s)	397
AxyI	CCTNAGG	1 cut(s)	393
BalI	TGGCCA	1 cut(s)	230
BanI	GGYRCC	2 cut(s)	371, 473
BbvI	GCAGC	1 cut(s)	554
BccI	CCATC	2 cut(s)	297, 464
BceAI	ACGGC	1 cut(s)	478
BciT130I	CCWGG	1 cut(s)	210
BcoDI	GTCTC	3 cut(s)	63, 100, 258
BfaI	CTAG	1 cut(s)	537
BfuAI	ACCTGC	1 cut(s)	580
BisI	GCNGC	2 cut(s)	197, 543
BlsI	GCNGC	2 cut(s)	198, 544
Bme1390I	CCNGG	1 cut(s)	210
Bme18I	GGWCC	1 cut(s)	397
BmgT120I	GGNCC	1 cut(s)	397
BmiI	GGNNCC	4 cut(s)	88, 373, 399, 475
BmrFI	CCNGG	1 cut(s)	210
BmrI	ACTGGG	1 cut(s)	191
BmsI	GCATC	2 cut(s)	158, 387
BmuI	ACTGGG	1 cut(s)	191
BplI	GAGNNNNNCTC	2 cut(s)	431, 463
BpmI	CTGGAG	1 cut(s)	14
BsaBI	GATNNNNATC	1 cut(s)	24
BsaI	GGTCTC	2 cut(s)	63, 258
BsaJI	CCNNGG	2 cut(s)	194, 418
Bsc4I	CCNNNNNNNGG	4 cut(s)	54, 181, 489, 555
Bse118I	RCCGGY	1 cut(s)	374
Bse1I	ACTGG	2 cut(s)	186, 494
Bse21I	CCTNAGG	1 cut(s)	393
Bse8I	GATNNNNATC	1 cut(s)	24
BseBI	CCWGG	1 cut(s)	210
BseDI	CCNNGG	2 cut(s)	194, 418
BseGI	GGATG	4 cut(s)	173, 289, 475, 560
BseJI	GATNNNNATC	1 cut(s)	24
BseLI	CCNNNNNNNGG	4 cut(s)	54, 181, 489, 555
BseMII	CTCAG	1 cut(s)	407
BseNI	ACTGG	2 cut(s)	186, 494
BseRI	GAGGAG	1 cut(s)	599
BseXI	GCAGC	1 cut(s)	554
Bsh1236I	CGCG	3 cut(s)	190, 196, 329
Bsh1285I	CGRYCG	1 cut(s)	194
BshFI	GGCC	3 cut(s)	199, 230, 493
BshNI	GGYRCC	2 cut(s)	371, 473
BsiEI	CGRYCG	1 cut(s)	194
BsiSI	CCGG	1 cut(s)	375
BslFI	GGGAC	1 cut(s)	383
BslI	CCNNNNNNNGG	4 cut(s)	54, 181, 489, 555
BsmAI	GTCTC	3 cut(s)	63, 100, 258
BsmFI	GGGAC	1 cut(s)	383
BsnI	GGCC	3 cut(s)	199, 230, 493
Bso31I	GGTCTC	2 cut(s)	63, 258
Bsp143I	GATC	2 cut(s)	19, 451
Bsp68I	TCGCGA	1 cut(s)	190
BspACI	CCGC	5 cut(s)	194, 196, 347, 410, 483
BspANI	GGCC	3 cut(s)	199, 230, 493
BspCNI	CTCAG	1 cut(s)	406
BspFNI	CGCG	3 cut(s)	190, 196, 329
BspLI	GGNNCC	4 cut(s)	88, 373, 399, 475
BspMI	ACCTGC	1 cut(s)	580
BspPI	GGATC	1 cut(s)	446
BspT107I	GGYRCC	2 cut(s)	371, 473
BspTNI	GGTCTC	2 cut(s)	63, 258
BsrFI	RCCGGY	1 cut(s)	374
BsrI	ACTGG	2 cut(s)	186, 494
BssAI	RCCGGY	1 cut(s)	374
BssECI	CCNNGG	2 cut(s)	194, 418
BssMI	GATC	2 cut(s)	19, 451
Bst2UI	CCWGG	1 cut(s)	210
Bst4CI	ACNGT	3 cut(s)	12, 385, 629
Bst6I	CTCTTC	1 cut(s)	47
BstDEI	CTNAG	1 cut(s)	393
BstDSI	CCRYGG	1 cut(s)	194
BstF5I	GGATG	4 cut(s)	173, 289, 475, 560
BstFNI	CGCG	3 cut(s)	190, 196, 329
BstHHI	GCGC	1 cut(s)	331
BstKTI	GATC	2 cut(s)	22, 454
BstMAI	GTCTC	3 cut(s)	63, 100, 258
BstMBI	GATC	2 cut(s)	19, 451
BstMCI	CGRYCG	1 cut(s)	194
BstMWI	GCNNNNNNNGC	1 cut(s)	196
BstNI	CCWGG	1 cut(s)	210
BstNSI	RCATGY	1 cut(s)	727
BstSCI	CCNGG	1 cut(s)	208
BstUI	CGCG	3 cut(s)	190, 196, 329
BstV1I	GCAGC	1 cut(s)	554
Bsu36I	CCTNAGG	1 cut(s)	393
BsuRI	GGCC	3 cut(s)	199, 230, 493
BtgI	CCRYGG	1 cut(s)	194
BtsCI	GGATG	4 cut(s)	173, 289, 475, 560
BtsIMutI	CAGTG	2 cut(s)	17, 381
BtuMI	TCGCGA	1 cut(s)	190
BveI	ACCTGC	1 cut(s)	580
CfoI	GCGC	1 cut(s)	331
Cfr10I	RCCGGY	1 cut(s)	374
Cfr13I	GGNCC	1 cut(s)	397
Cfr42I	CCGCGG	1 cut(s)	197
CsiI	ACCWGGT	1 cut(s)	208
Csp6I	GTAC	1 cut(s)	372
CviAII	CATG	2 cut(s)	164, 724
CviJI	RGCY	7 cut(s)	199, 230, 464, 493, 545, 576, 683
CviKI_1	RGCY	7 cut(s)	199, 230, 464, 493, 545, 576, 683
CviQI	GTAC	1 cut(s)	372
DdeI	CTNAG	1 cut(s)	393
DpnI	GATC	2 cut(s)	21, 453
DpnII	GATC	2 cut(s)	19, 451
EaeI	YGGCCR	2 cut(s)	228, 491
Eam1104I	CTCTTC	1 cut(s)	47
EarI	CTCTTC	1 cut(s)	47
EciI	GGCGGA	1 cut(s)	336
Eco31I	GGTCTC	2 cut(s)	63, 258
Eco47I	GGWCC	1 cut(s)	397
Eco81I	CCTNAGG	1 cut(s)	393
EcoO109I	RGGNCCY	1 cut(s)	397
EcoRII	CCWGG	1 cut(s)	208
FaeI	CATG	2 cut(s)	167, 727
FaqI	GGGAC	1 cut(s)	383
FatI	CATG	2 cut(s)	163, 723
FauI	CCCGC	1 cut(s)	417
Fnu4HI	GCNGC	2 cut(s)	197, 543
FokI	GGATG	4 cut(s)	180, 276, 482, 547
Fsp4HI	GCNGC	2 cut(s)	197, 543
FspBI	CTAG	1 cut(s)	537
GlaI	GCGC	1 cut(s)	330
GluI	GCNGC	2 cut(s)	197, 543
GsuI	CTGGAG	1 cut(s)	14
HaeIII	GGCC	3 cut(s)	199, 230, 493
HapII	CCGG	1 cut(s)	375
HhaI	GCGC	1 cut(s)	331
Hin1II	CATG	2 cut(s)	167, 727
Hin6I	GCGC	1 cut(s)	329
HinP1I	GCGC	1 cut(s)	329
HindIII	AAGCTT	1 cut(s)	681
HinfI	GANTC	3 cut(s)	320, 446, 500
HpaII	CCGG	1 cut(s)	375
HphI	GGTGA	4 cut(s)	101, 140, 287, 397
Hpy188I	TCNGA	3 cut(s)	263, 451, 469
Hpy188III	TCNNGA	6 cut(s)	31, 84, 189, 215, 245, 713
Hpy99I	CGWCG	1 cut(s)	339
HpyAV	CCTTC	5 cut(s)	72, 122, 170, 536, 697
HpyCH4III	ACNGT	3 cut(s)	12, 385, 629
HpyF10VI	GCNNNNNNNGC	1 cut(s)	196
HpyF3I	CTNAG	1 cut(s)	393
Hsp92II	CATG	2 cut(s)	167, 727
HspAI	GCGC	1 cut(s)	329
KpnI	GGTACC	1 cut(s)	375
KspI	CCGCGG	1 cut(s)	197
Kzo9I	GATC	2 cut(s)	19, 451
LmnI	GCTCC	3 cut(s)	123, 528, 586
Lsp1109I	GCAGC	1 cut(s)	554
LweI	GCATC	2 cut(s)	158, 387
MabI	ACCWGGT	1 cut(s)	208
MaeI	CTAG	1 cut(s)	537
MaeIII	GTNAC	1 cut(s)	592
MalI	GATC	2 cut(s)	21, 453
MboI	GATC	2 cut(s)	19, 451
MboII	GAAGA	4 cut(s)	64, 625, 628, 680
MfeI	CAATTG	1 cut(s)	608
MlsI	TGGCCA	1 cut(s)	230
MluCI	AATT	1 cut(s)	608
MluNI	TGGCCA	1 cut(s)	230
MlyI	GAGTC	2 cut(s)	440, 509
Mox20I	TGGCCA	1 cut(s)	230
MroXI	GAANNNNTTC	1 cut(s)	672
MscI	TGGCCA	1 cut(s)	230
Msp20I	TGGCCA	1 cut(s)	230
MspA1I	CMGCKG	1 cut(s)	196
MspI	CCGG	1 cut(s)	375
MspR9I	CCNGG	1 cut(s)	210
MunI	CAATTG	1 cut(s)	608
MvaI	CCWGG	1 cut(s)	210
MvnI	CGCG	3 cut(s)	190, 196, 329
MwoI	GCNNNNNNNGC	1 cut(s)	196
NdeII	GATC	2 cut(s)	19, 451
NlaIII	CATG	2 cut(s)	167, 727
NlaIV	GGNNCC	4 cut(s)	88, 373, 399, 475
NruI	TCGCGA	1 cut(s)	190
NspI	RCATGY	1 cut(s)	727
PciI	ACATGT	1 cut(s)	723
PdmI	GAANNNNTTC	1 cut(s)	672
PfeI	GAWTC	1 cut(s)	320
PflMI	CCANNNNNTGG	1 cut(s)	181
PkrI	GCNGC	2 cut(s)	198, 544
PleI	GAGTC	2 cut(s)	440, 508
PpsI	GAGTC	2 cut(s)	440, 508
PpuMI	RGGWCCY	1 cut(s)	397
PscI	ACATGT	1 cut(s)	723
Psp5II	RGGWCCY	1 cut(s)	397
Psp6I	CCWGG	1 cut(s)	208
PspGI	CCWGG	1 cut(s)	208
PspN4I	GGNNCC	4 cut(s)	88, 373, 399, 475
PspPI	GGNCC	1 cut(s)	397
PspPPI	RGGWCCY	1 cut(s)	397
RruI	TCGCGA	1 cut(s)	190
RsaI	GTAC	1 cut(s)	373
RsaNI	GTAC	1 cut(s)	372
SacII	CCGCGG	1 cut(s)	197
SatI	GCNGC	2 cut(s)	197, 543
Sau3AI	GATC	2 cut(s)	19, 451
Sau96I	GGNCC	1 cut(s)	397
SchI	GAGTC	2 cut(s)	440, 509
ScrFI	CCNGG	1 cut(s)	210
SexAI	ACCWGGT	1 cut(s)	208
SfaNI	GCATC	2 cut(s)	158, 387
Sfr303I	CCGCGG	1 cut(s)	197
SgrBI	CCGCGG	1 cut(s)	197
SinI	GGWCC	1 cut(s)	397
Sse9I	AATT	1 cut(s)	608
SsiI	CCGC	5 cut(s)	194, 196, 347, 410, 483
SspMI	CTAG	1 cut(s)	537
StyD4I	CCNGG	1 cut(s)	208
TaaI	ACNGT	3 cut(s)	12, 385, 629
TaqI	TCGA	4 cut(s)	18, 214, 337, 498
TasI	AATT	1 cut(s)	608
TauI	GCSGC	1 cut(s)	199
TfiI	GAWTC	1 cut(s)	320
TscAI	CASTG	2 cut(s)	17, 388
TseI	GCWGC	1 cut(s)	542
TspDTI	ATGAA	5 cut(s)	17, 54, 65, 152, 698
TspGWI	ACGGA	2 cut(s)	110, 596
TspRI	CASTG	2 cut(s)	17, 388
Van91I	CCANNNNNTGG	1 cut(s)	181
VpaK11BI	GGWCC	1 cut(s)	397
XceI	RCATGY	1 cut(s)	727
XmnI	GAANNNNTTC	1 cut(s)	672
XspI	CTAG	1 cut(s)	537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.