Rroxscaffold_3G00241950

Chaperone protein dnaJ 49-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0006961
Physical Location & Seq
Reverse (-)
34298646 .. 34298903
258 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00241950.1

Sequence Viewer

Length: 258 bp
ATGGGGCCAAAACCGCCGACAGGCCGTTCGGTCGAGTTTGGGTATGCCTCGGCTCGTCAAAAGAATTGGGCAGCTACCGGATCTGGGTCTTCCTTGGCGAGTGGCTATATGGAGAAGCAGGTTACAATTGTGAGGCAATTAAAGAAGATGAAGGATTATTATGAGATTTTAGGGGTGGAGAGGAGTTGTAGTGTTGAAGATGTTCGAAAAGCTTATAGGAAGCTGTCTTTGAAGGTTCATCCGGATAAGAACAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
DUF1977 DnaJ

Protein Analysis

85

Amino Acids

9.54

Weight (kDa)

9.9

Isoelectric Point (pI)

38.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 52 - 84 1.8e-13 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 109
AccIII TCCGGA 1 cut(s) 241
AciI CCGC 1 cut(s) 14
AclWI GGATC 1 cut(s) 88
AfiI CCNNNNNNNGG 2 cut(s) 20, 84
AgsI TTSAA 2 cut(s) 197, 232
AluBI AGCT 3 cut(s) 74, 212, 223
AluI AGCT 3 cut(s) 74, 212, 223
AlwI GGATC 1 cut(s) 88
Aor13HI TCCGGA 1 cut(s) 241
AoxI GGCC 2 cut(s) 5, 22
ApeKI GCWGC 1 cut(s) 71
ArsI GACNNNNNNTTYG 2 cut(s) 10, 42
Asp700I GAANNNNTTC 1 cut(s) 201
AspS9I GGNCC 1 cut(s) 5
AsuII TTCGAA 1 cut(s) 205
BbsI GAAGAC 1 cut(s) 81
BbvI GCAGC 1 cut(s) 83
BceAI ACGGC 1 cut(s) 9
BfuAI ACCTGC 1 cut(s) 109
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
BmgT120I GGNCC 1 cut(s) 5
BmiI GGNNCC 1 cut(s) 6
BpiI GAAGAC 1 cut(s) 81
Bpu14I TTCGAA 1 cut(s) 205
BsaJI CCNNGG 2 cut(s) 48, 93
BsaWI WCCGGW 2 cut(s) 77, 241
BsaXI ACNNNNNCTCC 2 cut(s) 175, 205
Bsc4I CCNNNNNNNGG 2 cut(s) 20, 84
BseAI TCCGGA 1 cut(s) 241
BseDI CCNNGG 2 cut(s) 48, 93
BseGI GGATG 1 cut(s) 238
BseLI CCNNNNNNNGG 2 cut(s) 20, 84
BseRI GAGGAG 1 cut(s) 196
BseXI GCAGC 1 cut(s) 83
Bsh1285I CGRYCG 1 cut(s) 33
BshFI GGCC 2 cut(s) 7, 24
BsiEI CGRYCG 1 cut(s) 33
BsiSI CCGG 2 cut(s) 78, 242
BslI CCNNNNNNNGG 2 cut(s) 20, 84
BsnI GGCC 2 cut(s) 7, 24
Bsp119I TTCGAA 1 cut(s) 205
Bsp13I TCCGGA 1 cut(s) 241
Bsp143I GATC 1 cut(s) 80
BspACI CCGC 1 cut(s) 14
BspANI GGCC 2 cut(s) 7, 24
BspEI TCCGGA 1 cut(s) 241
BspLI GGNNCC 1 cut(s) 6
BspMI ACCTGC 1 cut(s) 109
BspPI GGATC 1 cut(s) 88
BspT104I TTCGAA 1 cut(s) 205
BssECI CCNNGG 2 cut(s) 48, 93
BssMI GATC 1 cut(s) 80
BssT1I CCWWGG 1 cut(s) 93
BstBI TTCGAA 1 cut(s) 205
BstF5I GGATG 1 cut(s) 238
BstKTI GATC 1 cut(s) 83
BstMBI GATC 1 cut(s) 80
BstMCI CGRYCG 1 cut(s) 33
BstMWI GCNNNNNNNGC 1 cut(s) 13
BstV1I GCAGC 1 cut(s) 83
BstV2I GAAGAC 1 cut(s) 81
BstX2I RGATCY 1 cut(s) 80
BstYI RGATCY 1 cut(s) 80
BsuRI GGCC 2 cut(s) 7, 24
BtsCI GGATG 1 cut(s) 238
BveI ACCTGC 1 cut(s) 109
Cfr13I GGNCC 1 cut(s) 5
CviJI RGCY 7 cut(s) 7, 24, 53, 74, 105, 212, 223
CviKI_1 RGCY 7 cut(s) 7, 24, 53, 74, 105, 212, 223
DpnI GATC 1 cut(s) 82
DpnII GATC 1 cut(s) 80
Eco130I CCWWGG 1 cut(s) 93
EcoT14I CCWWGG 1 cut(s) 93
ErhI CCWWGG 1 cut(s) 93
FaiI YATR 5 cut(s) 45, 108, 110, 162, 216
Fnu4HI GCNGC 1 cut(s) 72
FokI GGATG 1 cut(s) 225
Fsp4HI GCNGC 1 cut(s) 72
GluI GCNGC 1 cut(s) 72
HaeIII GGCC 2 cut(s) 7, 24
HapII CCGG 2 cut(s) 78, 242
HindIII AAGCTT 1 cut(s) 210
HpaII CCGG 2 cut(s) 78, 242
Hpy188III TCNNGA 1 cut(s) 242
HpyAV CCTTC 2 cut(s) 145, 226
HpyF10VI GCNNNNNNNGC 1 cut(s) 13
Kpn2I TCCGGA 1 cut(s) 241
Kzo9I GATC 1 cut(s) 80
LpnPI CCDG 4 cut(s) 6, 69, 91, 104
Lsp1109I GCAGC 1 cut(s) 83
MaeIII GTNAC 1 cut(s) 121
MalI GATC 1 cut(s) 82
MboI GATC 1 cut(s) 80
MboII GAAGA 3 cut(s) 81, 157, 209
MfeI CAATTG 1 cut(s) 126
MflI RGATCY 1 cut(s) 80
MluCI AATT 3 cut(s) 64, 126, 137
MnlI CCTC 3 cut(s) 58, 126, 174
MroI TCCGGA 1 cut(s) 241
MroXI GAANNNNTTC 1 cut(s) 201
MseI TTAA 1 cut(s) 140
MspI CCGG 2 cut(s) 78, 242
MunI CAATTG 1 cut(s) 126
MwoI GCNNNNNNNGC 1 cut(s) 13
NdeII GATC 1 cut(s) 80
NlaIV GGNNCC 1 cut(s) 6
NmeAIII GCCGAG 1 cut(s) 29
NspV TTCGAA 1 cut(s) 205
PdmI GAANNNNTTC 1 cut(s) 201
PkrI GCNGC 1 cut(s) 73
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 5
PsuI RGATCY 1 cut(s) 80
SaqAI TTAA 1 cut(s) 140
SatI GCNGC 1 cut(s) 72
Sau3AI GATC 1 cut(s) 80
Sau96I GGNCC 1 cut(s) 5
SetI ASST 5 cut(s) 76, 123, 214, 225, 237
SfuI TTCGAA 1 cut(s) 205
Sse9I AATT 3 cut(s) 64, 126, 137
SsiI CCGC 1 cut(s) 14
StyI CCWWGG 1 cut(s) 93
TaqI TCGA 2 cut(s) 33, 205
TaqII GACCGA 1 cut(s) 19
TasI AATT 3 cut(s) 64, 126, 137
Tru1I TTAA 1 cut(s) 140
Tru9I TTAA 1 cut(s) 140
TseI GCWGC 1 cut(s) 71
TspDTI ATGAA 2 cut(s) 164, 227
XmnI GAANNNNTTC 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.