Rh2DG018900

DnaJ central domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0006961
Physical Location & Seq
Reverse (-)
1093338 .. 1094139
802 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG018900.1

Sequence Viewer

Length: 420 bp
ATGAGAAACTACCAAAACTGTCCTCTAAACACTCCTCTTTCTCTTGCCGTCTATTGTTCTTCTCTTTGCTTCCTGCAACAAATCTCATCTTGCTCAAGATCGGTTAGTTCTCTATCTGAATTCGAATTTTTGGGGTTTGGGTTTCTTTTGTTTAGAAATTTCTATTTAACTTCTGAAATTTTTGAATTGATTAGAGAGAAAATGTTTGGAGAGCTCCAAATAAATAGCGACAACACCAAGTACTATGAGATCCTTGGAGTGCCTAAGATCACCTCGCAAGATGATCTGAAGATGGCTTATAGAAAAGCAACCATCAAGAACCATCTTGATAGGGGCGGGGATCCAGAAAAGATTTCATCTTTTTCTTCTTTTCTGAAATGTCTTCGTTTACATTATCTTGTTTCAATTATGTGCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

139

Amino Acids

16.03

Weight (kDa)

8.21

Isoelectric Point (pI)

50.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 80 - 122 6.9e-07 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 336
AclWI GGATC 3 cut(s) 244, 335, 348
AcsI RAATTY 4 cut(s) 119, 125, 157, 177
AcuI CTGAAG 1 cut(s) 308
AfaI GTAC 1 cut(s) 242
AgsI TTSAA 2 cut(s) 185, 405
AluBI AGCT 1 cut(s) 214
AluI AGCT 1 cut(s) 214
Alw21I GWGCWC 2 cut(s) 216, 416
AlwI GGATC 3 cut(s) 244, 335, 348
ApoI RAATTY 4 cut(s) 119, 125, 157, 177
AsuHPI GGTGA 1 cut(s) 262
AsuII TTCGAA 1 cut(s) 123
BamHI GGATCC 1 cut(s) 340
BanII GRGCYC 1 cut(s) 216
BbsI GAAGAC 1 cut(s) 374
Bbv12I GWGCWC 2 cut(s) 216, 416
BccI CCATC 3 cut(s) 286, 320, 330
BceAI ACGGC 1 cut(s) 32
BmcAI AGTACT 1 cut(s) 242
BmiI GGNNCC 1 cut(s) 342
BpiI GAAGAC 1 cut(s) 374
Bpu14I TTCGAA 1 cut(s) 123
BpuEI CTTGAG 1 cut(s) 79
BsaJI CCNNGG 1 cut(s) 253
BseDI CCNNGG 1 cut(s) 253
BseRI GAGGAG 1 cut(s) 24
BsiHKAI GWGCWC 2 cut(s) 216, 416
Bsp119I TTCGAA 1 cut(s) 123
Bsp1286I GDGCHC 2 cut(s) 216, 416
Bsp143I GATC 5 cut(s) 98, 249, 267, 283, 340
BspACI CCGC 1 cut(s) 336
BspHI TCATGA 1 cut(s) 416
BspLI GGNNCC 1 cut(s) 342
BspPI GGATC 3 cut(s) 244, 335, 348
BspT104I TTCGAA 1 cut(s) 123
BssECI CCNNGG 1 cut(s) 253
BssMI GATC 5 cut(s) 98, 249, 267, 283, 340
BssT1I CCWWGG 1 cut(s) 253
Bst4CI ACNGT 1 cut(s) 20
BstBI TTCGAA 1 cut(s) 123
BstDEI CTNAG 1 cut(s) 264
BstKTI GATC 5 cut(s) 101, 252, 270, 286, 343
BstMBI GATC 5 cut(s) 98, 249, 267, 283, 340
BstV2I GAAGAC 1 cut(s) 374
BstX2I RGATCY 2 cut(s) 249, 340
BstYI RGATCY 2 cut(s) 249, 340
CciI TCATGA 1 cut(s) 416
Csp6I GTAC 1 cut(s) 241
CviAII CATG 1 cut(s) 417
CviJI RGCY 2 cut(s) 214, 296
CviKI_1 RGCY 2 cut(s) 214, 296
CviQI GTAC 1 cut(s) 241
DdeI CTNAG 1 cut(s) 264
DpnI GATC 5 cut(s) 100, 251, 269, 285, 342
DpnII GATC 5 cut(s) 98, 249, 267, 283, 340
Ecl136II GAGCTC 1 cut(s) 214
Eco130I CCWWGG 1 cut(s) 253
Eco24I GRGCYC 1 cut(s) 216
Eco53kI GAGCTC 1 cut(s) 214
Eco57I CTGAAG 1 cut(s) 308
EcoICRI GAGCTC 1 cut(s) 214
EcoRI GAATTC 1 cut(s) 119
EcoT14I CCWWGG 1 cut(s) 253
EcoT38I GRGCYC 1 cut(s) 216
ErhI CCWWGG 1 cut(s) 253
FaeI CATG 1 cut(s) 420
FaiI YATR 4 cut(s) 246, 300, 410, 418
FatI CATG 1 cut(s) 416
FauI CCCGC 1 cut(s) 329
FriOI GRGCYC 1 cut(s) 216
Hin1II CATG 1 cut(s) 420
HphI GGTGA 1 cut(s) 262
Hpy166II GTNNAC 1 cut(s) 389
Hpy188I TCNGA 4 cut(s) 118, 175, 288, 375
Hpy188III TCNNGA 5 cut(s) 96, 316, 326, 344, 417
Hpy8I GTNNAC 1 cut(s) 389
HpyCH4III ACNGT 1 cut(s) 20
HpyCH4V TGCA 1 cut(s) 76
HpyF3I CTNAG 1 cut(s) 264
Hsp92II CATG 1 cut(s) 420
Kzo9I GATC 5 cut(s) 98, 249, 267, 283, 340
LmnI GCTCC 1 cut(s) 219
LpnPI CCDG 2 cut(s) 86, 357
MalI GATC 5 cut(s) 100, 251, 269, 285, 342
MboI GATC 5 cut(s) 98, 249, 267, 283, 340
MboII GAAGA 4 cut(s) 51, 301, 357, 374
MflI RGATCY 2 cut(s) 249, 340
MhlI GDGCHC 2 cut(s) 216, 416
MluCI AATT 6 cut(s) 119, 125, 157, 177, 185, 405
MnlI CCTC 3 cut(s) 33, 45, 283
MseI TTAA 1 cut(s) 167
NdeII GATC 5 cut(s) 98, 249, 267, 283, 340
NlaIII CATG 1 cut(s) 420
NlaIV GGNNCC 1 cut(s) 342
NspV TTCGAA 1 cut(s) 123
PagI TCATGA 1 cut(s) 416
Psp124BI GAGCTC 1 cut(s) 216
PspN4I GGNNCC 1 cut(s) 342
PsuI RGATCY 2 cut(s) 249, 340
RsaI GTAC 1 cut(s) 242
RsaNI GTAC 1 cut(s) 241
SacI GAGCTC 1 cut(s) 216
SaqAI TTAA 1 cut(s) 167
Sau3AI GATC 5 cut(s) 98, 249, 267, 283, 340
ScaI AGTACT 1 cut(s) 242
SduI GDGCHC 2 cut(s) 216, 416
SetI ASST 2 cut(s) 216, 275
SfuI TTCGAA 1 cut(s) 123
SmlI CTYRAG 1 cut(s) 94
SmoI CTYRAG 1 cut(s) 94
Sse9I AATT 6 cut(s) 119, 125, 157, 177, 185, 405
SsiI CCGC 1 cut(s) 336
SstI GAGCTC 1 cut(s) 216
StyI CCWWGG 1 cut(s) 253
TaaI ACNGT 1 cut(s) 20
TaqI TCGA 1 cut(s) 123
TasI AATT 6 cut(s) 119, 125, 157, 177, 185, 405
TatI WGTACW 1 cut(s) 240
Tru1I TTAA 1 cut(s) 167
Tru9I TTAA 1 cut(s) 167
TspDTI ATGAA 1 cut(s) 345
XapI RAATTY 4 cut(s) 119, 125, 157, 177
ZrmI AGTACT 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.