RLG00000012138

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0006961
Physical Location & Seq
Reverse (-)
15634300 .. 15634927
628 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012138

Sequence Viewer

Length: 477 bp
ATGCTTCCCTCTTTCATCGACGGCAGAGACGACATCGCCGGAGCCTCGGAATCCGATTTGGGAGTGGATCGATTAGGAGTCCACGGCGGCCTTGTCAAGTTCTATTCCGGCGCGTCAATATGGAAGAAGTTGAGGTGGCCGATGATTGGAAGTGGCCGGGCCTGTACTCATCGTCCGGGTTCTTGGGTTTCGATTCCGTCGGCTATTATCACTGGTACACACCCAGCGAAACTGACTCAACCAGTCTCGGACTCCATGGGGCCCACTCAAGCGGGCACAAATAGAATACTGATCGTACAATCTCCGACTGATAACTCGCAAAACGAAAATCTCCGGTCGCTGTTAAACTTTCGCCATATTTTCGTCTGCACCCGCCTGTTAAACAATATCCCTAAACAAAAACCCAAACCACGGCGGCTTCAAGGGACAATCGCTGCCATGGCAATCAGTGTCATCGCCGCAGGGAGTGGGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

16.97

Weight (kDa)

10.48

Isoelectric Point (pI)

49.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 113
AciI CCGC 5 cut(s) 87, 272, 373, 415, 459
AclWI GGATC 1 cut(s) 75
AcoI YGGCCR 2 cut(s) 137, 154
AfaI GTAC 3 cut(s) 166, 217, 297
AfiI CCNNNNNNNGG 2 cut(s) 146, 411
AgsI TTSAA 1 cut(s) 422
Alw26I GTCTC 2 cut(s) 21, 250
AlwI GGATC 1 cut(s) 75
AoxI GGCC 5 cut(s) 88, 137, 154, 159, 260
ApaI GGGCCC 1 cut(s) 264
ApeKI GCWGC 1 cut(s) 434
AspLEI GCGC 1 cut(s) 113
AspS9I GGNCC 3 cut(s) 159, 260, 261
AsuC2I CCSGG 2 cut(s) 158, 177
BaeGI GKGCMC 2 cut(s) 264, 278
BanII GRGCYC 1 cut(s) 264
BbvI GCAGC 1 cut(s) 421
BceAI ACGGC 3 cut(s) 37, 100, 428
BcnI CCSGG 2 cut(s) 158, 177
BcoDI GTCTC 2 cut(s) 21, 250
BisI GCNGC 4 cut(s) 88, 416, 435, 459
BlsI GCNGC 4 cut(s) 89, 417, 436, 460
Bme1390I CCNGG 2 cut(s) 158, 177
BmgT120I GGNCC 3 cut(s) 159, 260, 261
BmiI GGNNCC 3 cut(s) 43, 261, 262
BmrFI CCNGG 2 cut(s) 158, 177
BpuEI CTTGAG 1 cut(s) 252
BpuMI CCSGG 2 cut(s) 158, 177
Bsa29I ATCGAT 1 cut(s) 70
BsaJI CCNNGG 5 cut(s) 45, 82, 255, 410, 438
BsaWI WCCGGW 1 cut(s) 333
Bsc4I CCNNNNNNNGG 2 cut(s) 146, 411
Bse1I ACTGG 2 cut(s) 217, 242
BseCI ATCGAT 1 cut(s) 70
BseDI CCNNGG 5 cut(s) 45, 82, 255, 410, 438
BseLI CCNNNNNNNGG 2 cut(s) 146, 411
BseNI ACTGG 2 cut(s) 217, 242
BseSI GKGCMC 2 cut(s) 264, 278
BseXI GCAGC 1 cut(s) 421
BseYI CCCAGC 1 cut(s) 223
BsgI GTGCAG 1 cut(s) 352
Bsh1236I CGCG 1 cut(s) 113
Bsh1285I CGRYCG 1 cut(s) 338
BshFI GGCC 5 cut(s) 90, 139, 156, 161, 262
BshVI ATCGAT 1 cut(s) 70
BsiEI CGRYCG 1 cut(s) 338
BsiSI CCGG 5 cut(s) 39, 108, 157, 176, 334
BslFI GGGAC 1 cut(s) 439
BslI CCNNNNNNNGG 2 cut(s) 146, 411
BsmAI GTCTC 2 cut(s) 21, 250
BsmBI CGTCTC 1 cut(s) 21
BsmFI GGGAC 1 cut(s) 439
BsnI GGCC 5 cut(s) 90, 139, 156, 161, 262
Bsp120I GGGCCC 1 cut(s) 260
Bsp1286I GDGCHC 2 cut(s) 264, 278
Bsp143I GATC 2 cut(s) 67, 291
Bsp19I CCATGG 2 cut(s) 255, 438
BspACI CCGC 5 cut(s) 87, 272, 373, 415, 459
BspANI GGCC 5 cut(s) 90, 139, 156, 161, 262
BspDI ATCGAT 1 cut(s) 70
BspFNI CGCG 1 cut(s) 113
BspLI GGNNCC 3 cut(s) 43, 261, 262
BspPI GGATC 1 cut(s) 75
BsrI ACTGG 2 cut(s) 217, 242
BssECI CCNNGG 5 cut(s) 45, 82, 255, 410, 438
BssMI GATC 2 cut(s) 67, 291
BssT1I CCWWGG 2 cut(s) 255, 438
BstC8I GCNNGC 1 cut(s) 274
BstDSI CCRYGG 4 cut(s) 82, 255, 410, 438
BstFNI CGCG 1 cut(s) 113
BstHHI GCGC 1 cut(s) 113
BstKTI GATC 2 cut(s) 70, 294
BstMAI GTCTC 2 cut(s) 21, 250
BstMBI GATC 2 cut(s) 67, 291
BstMCI CGRYCG 1 cut(s) 338
BstMWI GCNNNNNNNGC 1 cut(s) 440
BstSCI CCNGG 2 cut(s) 156, 175
BstSLI GKGCMC 2 cut(s) 264, 278
BstUI CGCG 1 cut(s) 113
BstV1I GCAGC 1 cut(s) 421
Bsu15I ATCGAT 1 cut(s) 70
BsuRI GGCC 5 cut(s) 90, 139, 156, 161, 262
BsuTUI ATCGAT 1 cut(s) 70
BtgI CCRYGG 4 cut(s) 82, 255, 410, 438
BtgZI GCGATG 2 cut(s) 19, 439
BtsIMutI CAGTG 2 cut(s) 210, 454
Cac8I GCNNGC 1 cut(s) 274
CfoI GCGC 1 cut(s) 113
Cfr13I GGNCC 3 cut(s) 159, 260, 261
ClaI ATCGAT 1 cut(s) 70
CseI GACGC 1 cut(s) 102
Csp6I GTAC 3 cut(s) 165, 216, 296
CviAII CATG 2 cut(s) 256, 439
CviJI RGCY 8 cut(s) 44, 90, 139, 156, 161, 203, 262, 418
CviKI_1 RGCY 8 cut(s) 44, 90, 139, 156, 161, 203, 262, 418
CviQI GTAC 3 cut(s) 165, 216, 296
DpnI GATC 2 cut(s) 69, 293
DpnII GATC 2 cut(s) 67, 291
EaeI YGGCCR 2 cut(s) 137, 154
Eco130I CCWWGG 2 cut(s) 255, 438
Eco24I GRGCYC 1 cut(s) 264
EcoO109I RGGNCCY 1 cut(s) 260
EcoT14I CCWWGG 2 cut(s) 255, 438
EcoT38I GRGCYC 1 cut(s) 264
ErhI CCWWGG 2 cut(s) 255, 438
Esp3I CGTCTC 1 cut(s) 21
FaeI CATG 2 cut(s) 259, 442
FaiI YATR 4 cut(s) 121, 257, 357, 440
FaqI GGGAC 1 cut(s) 439
FatI CATG 2 cut(s) 255, 438
FauI CCCGC 2 cut(s) 265, 380
Fnu4HI GCNGC 4 cut(s) 88, 416, 435, 459
FriOI GRGCYC 1 cut(s) 264
Fsp4HI GCNGC 4 cut(s) 88, 416, 435, 459
GlaI GCGC 1 cut(s) 112
GluI GCNGC 4 cut(s) 88, 416, 435, 459
GsaI CCCAGC 1 cut(s) 227
HaeIII GGCC 5 cut(s) 90, 139, 156, 161, 262
HapII CCGG 5 cut(s) 39, 108, 157, 176, 334
HgaI GACGC 1 cut(s) 102
HhaI GCGC 1 cut(s) 113
Hin1II CATG 2 cut(s) 259, 442
Hin6I GCGC 1 cut(s) 111
HinP1I GCGC 1 cut(s) 111
HinfI GANTC 5 cut(s) 50, 78, 193, 235, 251
HpaII CCGG 5 cut(s) 39, 108, 157, 176, 334
Hpy166II GTNNAC 2 cut(s) 82, 218
Hpy188I TCNGA 4 cut(s) 49, 55, 250, 306
Hpy8I GTNNAC 2 cut(s) 82, 218
Hpy99I CGWCG 2 cut(s) 23, 202
HpyCH4V TGCA 1 cut(s) 369
HpyF10VI GCNNNNNNNGC 1 cut(s) 440
Hsp92II CATG 2 cut(s) 259, 442
HspAI GCGC 1 cut(s) 111
Kzo9I GATC 2 cut(s) 67, 291
LmnI GCTCC 1 cut(s) 41
Lsp1109I GCAGC 1 cut(s) 421
MalI GATC 2 cut(s) 69, 293
MboI GATC 2 cut(s) 67, 291
MboII GAAGA 1 cut(s) 136
MhlI GDGCHC 2 cut(s) 264, 278
MlyI GAGTC 3 cut(s) 87, 229, 245
MmeI TCCRAC 1 cut(s) 329
MnlI CCTC 3 cut(s) 19, 55, 126
MseI TTAA 2 cut(s) 344, 380
MspI CCGG 5 cut(s) 39, 108, 157, 176, 334
MspR9I CCNGG 2 cut(s) 158, 177
MvnI CGCG 1 cut(s) 113
MwoI GCNNNNNNNGC 1 cut(s) 440
NciI CCSGG 2 cut(s) 158, 177
NcoI CCATGG 2 cut(s) 255, 438
NdeII GATC 2 cut(s) 67, 291
NlaIII CATG 2 cut(s) 259, 442
NlaIV GGNNCC 3 cut(s) 43, 261, 262
PcsI WCGNNNNNNNCGW 1 cut(s) 27
PfeI GAWTC 2 cut(s) 50, 193
PkrI GCNGC 4 cut(s) 89, 417, 436, 460
PleI GAGTC 3 cut(s) 86, 229, 245
PpsI GAGTC 3 cut(s) 86, 229, 245
PspFI CCCAGC 1 cut(s) 223
PspN4I GGNNCC 3 cut(s) 43, 261, 262
PspOMI GGGCCC 1 cut(s) 260
PspPI GGNCC 3 cut(s) 159, 260, 261
RsaI GTAC 3 cut(s) 166, 217, 297
RsaNI GTAC 3 cut(s) 165, 216, 296
SaqAI TTAA 2 cut(s) 344, 380
SatI GCNGC 4 cut(s) 88, 416, 435, 459
Sau3AI GATC 2 cut(s) 67, 291
Sau96I GGNCC 3 cut(s) 159, 260, 261
SchI GAGTC 3 cut(s) 87, 229, 245
ScrFI CCNGG 2 cut(s) 158, 177
SduI GDGCHC 2 cut(s) 264, 278
SetI ASST 1 cut(s) 137
SmlI CTYRAG 1 cut(s) 267
SmoI CTYRAG 1 cut(s) 267
SsiI CCGC 5 cut(s) 87, 272, 373, 415, 459
StyD4I CCNGG 2 cut(s) 156, 175
StyI CCWWGG 2 cut(s) 255, 438
TaqI TCGA 3 cut(s) 18, 70, 191
TatI WGTACW 1 cut(s) 164
TauI GCSGC 3 cut(s) 90, 418, 461
TfiI GAWTC 2 cut(s) 50, 193
Tru1I TTAA 2 cut(s) 344, 380
Tru9I TTAA 2 cut(s) 344, 380
TscAI CASTG 2 cut(s) 217, 454
TseI GCWGC 1 cut(s) 434
TspDTI ATGAA 1 cut(s) 4
TspGWI ACGGA 1 cut(s) 186
TspRI CASTG 2 cut(s) 217, 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.