Rh7AG095800

DnaJ central domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0006961
Physical Location & Seq
Forward (+)
7306200 .. 7308454
2255 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG095800.1

Sequence Viewer

Length: 621 bp
ATGGATTGGCAGAGAGCTCCAAAGAAAAGCGATAGCCGTAGGAACTACTATGACATCCTTGAAGTGCCTAAGAATTCTTCACAAGATGATCTGAAAAAGGCTTATAGAAGAGCAGTCATGAAGCACCATCCCGATAAGGGTGGTGATGTAGAAAAGTTCAAAGAGTTGGACCATGCATACAAGGTTCTGTGCGATCCACAGCAACGTGTCATCTATGACCGGGACGGTGAGGATCAGTTTGGCGAGGACATGTACGGTGGGGACCGGTATGGCAAGGATCAATACGGTGAGTACAAGTACAGCCAGAACAGATACGGTCAGGACTGGTACTGGTACTGGTACTGGTACGGTTCGAACCAATACGGTCAGGACTGGTACGGGAATCGGTACGACCAGGGCTGGTACGGCCAGAACCGGTATGGTAAGGAAAAGTATAGCAAGGACCGAGATCAGACTGGCGAGCAAAGGGATGTAGTTAGACTAATCTGGTCCCTAGGTTTGATGCTAGCAGAGATTCAGCATGGATATATATCTAGCTTGGAAAACAACATTTCTTTGGCTACAATAACAAAAGAGAGGCTTAAATTTCCTCCACCAGATCGAAAACCTTCCTCTGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

206

Amino Acids

24.78

Weight (kDa)

7.7

Isoelectric Point (pI)

29.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 15 - 73 5.6e-21 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 188, 240, 285
AcoI YGGCCR 1 cut(s) 406
AcsI RAATTY 2 cut(s) 73, 584
AfiI CCNNNNNNNGG 1 cut(s) 137
AflIII ACRYGT 2 cut(s) 205, 249
AgeI ACCGGT 2 cut(s) 264, 414
AgsI TTSAA 2 cut(s) 62, 160
AjnI CCWGG 1 cut(s) 393
AluBI AGCT 2 cut(s) 17, 537
AluI AGCT 2 cut(s) 17, 537
Alw21I GWGCWC 1 cut(s) 19
AlwI GGATC 3 cut(s) 188, 240, 285
AoxI GGCC 1 cut(s) 406
ApoI RAATTY 2 cut(s) 73, 584
AsiGI ACCGGT 2 cut(s) 264, 414
Asp700I GAANNNNTTC 1 cut(s) 607
AspA2I CCTAGG 1 cut(s) 493
AspS9I GGNCC 4 cut(s) 169, 262, 442, 489
AsuC2I CCSGG 1 cut(s) 221
AsuHPI GGTGA 3 cut(s) 155, 239, 299
AsuII TTCGAA 1 cut(s) 353
AsuNHI GCTAGC 1 cut(s) 505
AvaII GGWCC 4 cut(s) 169, 262, 442, 489
AvrII CCTAGG 1 cut(s) 493
BanII GRGCYC 1 cut(s) 19
Bbv12I GWGCWC 1 cut(s) 19
BccI CCATC 1 cut(s) 135
BceAI ACGGC 2 cut(s) 21, 421
BciT130I CCWGG 1 cut(s) 395
BcnI CCSGG 1 cut(s) 221
BfaI CTAG 3 cut(s) 494, 506, 534
BlnI CCTAGG 1 cut(s) 493
Bme1390I CCNGG 2 cut(s) 221, 395
Bme18I GGWCC 4 cut(s) 169, 262, 442, 489
BmgT120I GGNCC 4 cut(s) 169, 262, 442, 489
BmiI GGNNCC 2 cut(s) 263, 491
BmrFI CCNGG 2 cut(s) 221, 395
BmsI GCATC 1 cut(s) 492
BmtI GCTAGC 1 cut(s) 509
Bpu14I TTCGAA 1 cut(s) 353
BpuMI CCSGG 1 cut(s) 221
BsaBI GATNNNNATC 1 cut(s) 529
BsaJI CCNNGG 2 cut(s) 394, 493
BsaWI WCCGGW 2 cut(s) 264, 414
Bsc4I CCNNNNNNNGG 1 cut(s) 137
Bse118I RCCGGY 2 cut(s) 264, 414
Bse1I ACTGG 6 cut(s) 329, 335, 341, 347, 377, 460
Bse8I GATNNNNATC 1 cut(s) 529
BseBI CCWGG 1 cut(s) 395
BseDI CCNNGG 2 cut(s) 394, 493
BseGI GGATG 3 cut(s) 54, 127, 475
BseJI GATNNNNATC 1 cut(s) 529
BseLI CCNNNNNNNGG 1 cut(s) 137
BseNI ACTGG 6 cut(s) 329, 335, 341, 347, 377, 460
BshFI GGCC 1 cut(s) 408
BshTI ACCGGT 2 cut(s) 264, 414
BsiHKAI GWGCWC 1 cut(s) 19
BsiSI CCGG 3 cut(s) 220, 265, 415
BslFI GGGAC 3 cut(s) 236, 275, 475
BslI CCNNNNNNNGG 1 cut(s) 137
BsmFI GGGAC 3 cut(s) 236, 275, 475
BsnI GGCC 1 cut(s) 408
Bsp119I TTCGAA 1 cut(s) 353
Bsp1286I GDGCHC 1 cut(s) 19
Bsp143I GATC 6 cut(s) 88, 193, 232, 277, 448, 598
BspANI GGCC 1 cut(s) 408
BspHI TCATGA 1 cut(s) 117
BspLI GGNNCC 2 cut(s) 263, 491
BspOI GCTAGC 1 cut(s) 509
BspPI GGATC 3 cut(s) 188, 240, 285
BspQI GCTCTTC 1 cut(s) 103
BspT104I TTCGAA 1 cut(s) 353
BsrFI RCCGGY 2 cut(s) 264, 414
BsrI ACTGG 6 cut(s) 329, 335, 341, 347, 377, 460
BssAI RCCGGY 2 cut(s) 264, 414
BssECI CCNNGG 2 cut(s) 394, 493
BssMI GATC 6 cut(s) 88, 193, 232, 277, 448, 598
BssT1I CCWWGG 1 cut(s) 493
Bst2UI CCWGG 1 cut(s) 395
Bst4CI ACNGT 6 cut(s) 227, 257, 287, 317, 350, 365
Bst6I CTCTTC 1 cut(s) 103
BstBI TTCGAA 1 cut(s) 353
BstC8I GCNNGC 2 cut(s) 461, 507
BstDEI CTNAG 1 cut(s) 69
BstF5I GGATG 3 cut(s) 54, 127, 475
BstKTI GATC 6 cut(s) 91, 196, 235, 280, 451, 601
BstMBI GATC 6 cut(s) 88, 193, 232, 277, 448, 598
BstMWI GCNNNNNNNGC 1 cut(s) 405
BstNI CCWGG 1 cut(s) 395
BstNSI RCATGY 1 cut(s) 253
BstSCI CCNGG 2 cut(s) 219, 393
BsuRI GGCC 1 cut(s) 408
BtsCI GGATG 3 cut(s) 54, 127, 475
Cac8I GCNNGC 2 cut(s) 461, 507
CciI TCATGA 1 cut(s) 117
Cfr10I RCCGGY 2 cut(s) 264, 414
Cfr13I GGNCC 4 cut(s) 169, 262, 442, 489
CspAI ACCGGT 2 cut(s) 264, 414
CviAII CATG 4 cut(s) 118, 173, 250, 521
CviJI RGCY 9 cut(s) 17, 36, 101, 303, 399, 408, 537, 560, 580
CviKI_1 RGCY 9 cut(s) 17, 36, 101, 303, 399, 408, 537, 560, 580
DdeI CTNAG 1 cut(s) 69
DpnI GATC 6 cut(s) 90, 195, 234, 279, 450, 600
DpnII GATC 6 cut(s) 88, 193, 232, 277, 448, 598
EaeI YGGCCR 1 cut(s) 406
Eam1104I CTCTTC 1 cut(s) 103
EarI CTCTTC 1 cut(s) 103
Ecl136II GAGCTC 1 cut(s) 17
Eco130I CCWWGG 1 cut(s) 493
Eco24I GRGCYC 1 cut(s) 19
Eco47I GGWCC 4 cut(s) 169, 262, 442, 489
Eco53kI GAGCTC 1 cut(s) 17
EcoICRI GAGCTC 1 cut(s) 17
EcoRI GAATTC 1 cut(s) 73
EcoRII CCWGG 1 cut(s) 393
EcoT14I CCWWGG 1 cut(s) 493
EcoT22I ATGCAT 1 cut(s) 178
EcoT38I GRGCYC 1 cut(s) 19
ErhI CCWWGG 1 cut(s) 493
FaeI CATG 4 cut(s) 121, 176, 253, 524
FalI AAGNNNNNCTT 2 cut(s) 564, 596
FaqI GGGAC 3 cut(s) 236, 275, 475
FatI CATG 4 cut(s) 117, 172, 249, 520
FokI GGATG 3 cut(s) 41, 114, 482
FriOI GRGCYC 1 cut(s) 19
FspBI CTAG 3 cut(s) 494, 506, 534
HaeIII GGCC 1 cut(s) 408
HapII CCGG 3 cut(s) 220, 265, 415
Hin1II CATG 4 cut(s) 121, 176, 253, 524
HinfI GANTC 2 cut(s) 382, 514
HpaII CCGG 3 cut(s) 220, 265, 415
HphI GGTGA 3 cut(s) 155, 239, 299
Hpy188I TCNGA 2 cut(s) 93, 453
Hpy188III TCNNGA 4 cut(s) 118, 131, 320, 368
HpyAV CCTTC 1 cut(s) 618
HpyCH4III ACNGT 6 cut(s) 227, 257, 287, 317, 350, 365
HpyCH4IV ACGT 1 cut(s) 205
HpyCH4V TGCA 1 cut(s) 176
HpyF10VI GCNNNNNNNGC 1 cut(s) 405
HpyF3I CTNAG 1 cut(s) 69
HpySE526I ACGT 1 cut(s) 205
Hsp92II CATG 4 cut(s) 121, 176, 253, 524
Kzo9I GATC 6 cut(s) 88, 193, 232, 277, 448, 598
LguI GCTCTTC 1 cut(s) 103
LmnI GCTCC 1 cut(s) 22
LweI GCATC 1 cut(s) 492
MaeI CTAG 3 cut(s) 494, 506, 534
MaeII ACGT 1 cut(s) 205
MalI GATC 6 cut(s) 90, 195, 234, 279, 450, 600
MboI GATC 6 cut(s) 88, 193, 232, 277, 448, 598
MboII GAAGA 2 cut(s) 69, 120
MhlI GDGCHC 1 cut(s) 19
MluCI AATT 2 cut(s) 73, 584
MmeI TCCRAC 1 cut(s) 147
MnlI CCTC 4 cut(s) 223, 238, 570, 600
Mph1103I ATGCAT 1 cut(s) 178
MroXI GAANNNNTTC 1 cut(s) 607
MseI TTAA 1 cut(s) 582
MspI CCGG 3 cut(s) 220, 265, 415
MspR9I CCNGG 2 cut(s) 221, 395
MvaI CCWGG 1 cut(s) 395
MwoI GCNNNNNNNGC 1 cut(s) 405
NciI CCSGG 1 cut(s) 221
NdeII GATC 6 cut(s) 88, 193, 232, 277, 448, 598
NheI GCTAGC 1 cut(s) 505
NlaIII CATG 4 cut(s) 121, 176, 253, 524
NlaIV GGNNCC 2 cut(s) 263, 491
NsiI ATGCAT 1 cut(s) 178
NspI RCATGY 1 cut(s) 253
NspV TTCGAA 1 cut(s) 353
PagI TCATGA 1 cut(s) 117
PciI ACATGT 1 cut(s) 249
PciSI GCTCTTC 1 cut(s) 103
PdmI GAANNNNTTC 1 cut(s) 607
PfeI GAWTC 2 cut(s) 382, 514
PinAI ACCGGT 2 cut(s) 264, 414
PscI ACATGT 1 cut(s) 249
Psp124BI GAGCTC 1 cut(s) 19
Psp6I CCWGG 1 cut(s) 393
PspGI CCWGG 1 cut(s) 393
PspN4I GGNNCC 2 cut(s) 263, 491
PspPI GGNCC 4 cut(s) 169, 262, 442, 489
SacI GAGCTC 1 cut(s) 19
SapI GCTCTTC 1 cut(s) 103
SaqAI TTAA 1 cut(s) 582
Sau3AI GATC 6 cut(s) 88, 193, 232, 277, 448, 598
Sau96I GGNCC 4 cut(s) 169, 262, 442, 489
ScrFI CCNGG 2 cut(s) 221, 395
SduI GDGCHC 1 cut(s) 19
SetI ASST 6 cut(s) 19, 186, 208, 499, 539, 610
SfaNI GCATC 1 cut(s) 492
SfuI TTCGAA 1 cut(s) 353
SinI GGWCC 4 cut(s) 169, 262, 442, 489
Sse9I AATT 2 cut(s) 73, 584
SspMI CTAG 3 cut(s) 494, 506, 534
SstI GAGCTC 1 cut(s) 19
StyD4I CCNGG 2 cut(s) 219, 393
StyI CCWWGG 1 cut(s) 493
TaaI ACNGT 6 cut(s) 227, 257, 287, 317, 350, 365
TaiI ACGT 1 cut(s) 208
TaqI TCGA 2 cut(s) 353, 601
TaqII GACCGA 1 cut(s) 459
TasI AATT 2 cut(s) 73, 584
TatI WGTACW 2 cut(s) 291, 297
TfiI GAWTC 2 cut(s) 382, 514
Tru1I TTAA 1 cut(s) 582
Tru9I TTAA 1 cut(s) 582
TspDTI ATGAA 1 cut(s) 134
VpaK11BI GGWCC 4 cut(s) 169, 262, 442, 489
XapI RAATTY 2 cut(s) 73, 584
XceI RCATGY 1 cut(s) 253
XcmI CCANNNNNNNNNTGG 1 cut(s) 416
XmaJI CCTAGG 1 cut(s) 493
XmnI GAANNNNTTC 1 cut(s) 607
XspI CTAG 3 cut(s) 494, 506, 534
Zsp2I ATGCAT 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.