Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011602.1

Orthogroup ID

OG0006961

Physical Location & Seq

Genomic Coordinates Reverse (-)

1379 .. 4322

Gene Structure 2944 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011602.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

atgccacctggaaggtacgccaaccaagaaagcatcggaggatactgccaaccgggcgatgaggtgatggctagagggtattgccgactaactatctcatgccatcttgagggaaccaatgtctccttttcacttcaccttctgctccgtcctaaaatcccaccaccacgacatcacccacagaaccttcatggatgccaccataaactgggttcgcgaccgcggcctcaaccacctggtcgagagagaactttggccaatcatcaacatcaagaacctcatcaaatcagagacctccaaatccctccacatttccatcctcaccaaaacccgacactcccttatgattcccacgcgccccgtcgagtttgtccgccaatacccctctattttttaggtaccggcatcactgttctgcctcaggtccccctcaccccgcaagtcctcggtatgttattgttgattgagaaagactctgatcctctgtcggcttcggatggcaccaaaaccgccaactggccgttcgagtcaagtttgggtatgcctatgctccttcaaaggactagggcagcttccaagtctgggtcatcctctgcgagtggctatacggaggagcaggttacgattgcgaggcaattgaagaagaagcaggactgttatgagattttgggggtggagagaagttgtagtgttgaagatgttcaaaaagcttataggaagttgtctttgaaggttcatctggataagaacatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

DUF1977 DnaJ

Protein Analysis

251

Amino Acids

28.11

Weight (kDa)

9.2

Isoelectric Point (pI)

51.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006961)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g11130
rosa_chinensis	RchiOBHm_Chr7g0188521
rosa_laevigata	RLG00000004687 RLG00000004984 RLG00000009366 RLG00000012138 RLG00000034231
rosa_multiflora	Rmu_co8341479.1_g000001 Rmu_sc0000530.1_g000015 Rmu_sc0011602.1_g000002 Rmu_sc0012200.1_g000002
rosa_roxburghii	Rroxscaffold_3G00241950 Rroxscaffold_3G00266340
rosa_rugosa	Rorug06G0491000 Rorug07G0169400 Rorug07G0234800
rosa_samantha	Rh2AG017400 Rh2DG018900 Rh3CG283500 Rh4DG076100 Rh7AG095800 Rh7BG097600 Rh7CG098400 Rh7CG266300 Rh7DG097700 Rh7DG256100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	607
Acc65I	GGTACC	1 cut(s)	398
AccB1I	GGYRCC	2 cut(s)	398, 500
AccB7I	CCANNNNNTGG	1 cut(s)	208
AccII	CGCG	3 cut(s)	217, 223, 356
AciI	CCGC	5 cut(s)	221, 223, 374, 437, 510
AclWI	GGATC	1 cut(s)	473
AcoI	YGGCCR	2 cut(s)	255, 518
AfaI	GTAC	2 cut(s)	17, 400
AfiI	CCNNNNNNNGG	4 cut(s)	109, 208, 516, 582
AflIII	ACRYGT	1 cut(s)	750
AgsI	TTSAA	5 cut(s)	557, 640, 695, 704, 730
AjnI	CCWGG	2 cut(s)	7, 235
AjuI	GAANNNNNNNTTGG	2 cut(s)	506, 538
AluBI	AGCT	2 cut(s)	572, 710
AluI	AGCT	2 cut(s)	572, 710
Alw26I	GTCTC	2 cut(s)	127, 285
AlwI	GGATC	1 cut(s)	473
AoxI	GGCC	3 cut(s)	224, 255, 518
ApeKI	GCWGC	1 cut(s)	569
Asp700I	GAANNNNTTC	1 cut(s)	699
Asp718I	GGTACC	1 cut(s)	398
AspLEI	GCGC	1 cut(s)	358
AspS9I	GGNCC	1 cut(s)	424
AsuC2I	CCSGG	1 cut(s)	54
AsuHPI	GGTGA	5 cut(s)	76, 128, 167, 314, 424
AvaII	GGWCC	1 cut(s)	424
AxyI	CCTNAGG	1 cut(s)	420
BalI	TGGCCA	1 cut(s)	257
BanI	GGYRCC	2 cut(s)	398, 500
BbvI	GCAGC	1 cut(s)	581
BccI	CCATC	4 cut(s)	61, 111, 324, 491
BceAI	ACGGC	1 cut(s)	505
BciT130I	CCWGG	2 cut(s)	9, 237
BciVI	GTATCC	1 cut(s)	35
BcnI	CCSGG	1 cut(s)	54
BcoDI	GTCTC	2 cut(s)	127, 285
BfaI	CTAG	2 cut(s)	72, 564
BfuAI	ACCTGC	1 cut(s)	607
BfuI	GTATCC	1 cut(s)	35
BglI	GCCNNNNNGGC	1 cut(s)	54
BisI	GCNGC	2 cut(s)	224, 570
BlsI	GCNGC	2 cut(s)	225, 571
Bme1390I	CCNGG	3 cut(s)	9, 54, 237
Bme18I	GGWCC	1 cut(s)	424
BmgT120I	GGNCC	1 cut(s)	424
BmiI	GGNNCC	4 cut(s)	115, 400, 426, 502
BmrFI	CCNGG	3 cut(s)	9, 54, 237
BmrI	ACTGGG	1 cut(s)	218
BmsI	GCATC	3 cut(s)	42, 185, 414
BmuI	ACTGGG	1 cut(s)	218
BplI	GAGNNNNNCTC	2 cut(s)	458, 490
BpuEI	CTTGAG	1 cut(s)	128
BpuMI	CCSGG	1 cut(s)	54
BsaI	GGTCTC	1 cut(s)	285
BsaJI	CCNNGG	2 cut(s)	221, 445
Bsc4I	CCNNNNNNNGG	4 cut(s)	109, 208, 516, 582
Bse118I	RCCGGY	1 cut(s)	401
Bse1I	ACTGG	2 cut(s)	213, 521
Bse21I	CCTNAGG	1 cut(s)	420
BseBI	CCWGG	2 cut(s)	9, 237
BseDI	CCNNGG	2 cut(s)	221, 445
BseGI	GGATG	4 cut(s)	200, 316, 502, 587
BseLI	CCNNNNNNNGG	4 cut(s)	109, 208, 516, 582
BseMII	CTCAG	1 cut(s)	434
BseNI	ACTGG	2 cut(s)	213, 521
BseRI	GAGGAG	1 cut(s)	626
BseXI	GCAGC	1 cut(s)	581
Bsh1236I	CGCG	3 cut(s)	217, 223, 356
Bsh1285I	CGRYCG	1 cut(s)	221
BshFI	GGCC	3 cut(s)	226, 257, 520
BshNI	GGYRCC	2 cut(s)	398, 500
BsiEI	CGRYCG	1 cut(s)	221
BsiSI	CCGG	2 cut(s)	53, 402
BslFI	GGGAC	1 cut(s)	410
BslI	CCNNNNNNNGG	4 cut(s)	109, 208, 516, 582
BsmAI	GTCTC	2 cut(s)	127, 285
BsmFI	GGGAC	1 cut(s)	410
BsnI	GGCC	3 cut(s)	226, 257, 520
Bso31I	GGTCTC	1 cut(s)	285
Bsp143I	GATC	1 cut(s)	478
Bsp68I	TCGCGA	1 cut(s)	217
BspACI	CCGC	5 cut(s)	221, 223, 374, 437, 510
BspANI	GGCC	3 cut(s)	226, 257, 520
BspCNI	CTCAG	1 cut(s)	433
BspFNI	CGCG	3 cut(s)	217, 223, 356
BspLI	GGNNCC	4 cut(s)	115, 400, 426, 502
BspMI	ACCTGC	1 cut(s)	607
BspPI	GGATC	1 cut(s)	473
BspT107I	GGYRCC	2 cut(s)	398, 500
BspTNI	GGTCTC	1 cut(s)	285
BsrFI	RCCGGY	1 cut(s)	401
BsrI	ACTGG	2 cut(s)	213, 521
BssAI	RCCGGY	1 cut(s)	401
BssECI	CCNNGG	2 cut(s)	221, 445
BssMI	GATC	1 cut(s)	478
Bst2UI	CCWGG	2 cut(s)	9, 237
Bst4CI	ACNGT	2 cut(s)	412, 656
BstDEI	CTNAG	1 cut(s)	420
BstDSI	CCRYGG	1 cut(s)	221
BstF5I	GGATG	4 cut(s)	200, 316, 502, 587
BstFNI	CGCG	3 cut(s)	217, 223, 356
BstHHI	GCGC	1 cut(s)	358
BstKTI	GATC	1 cut(s)	481
BstMAI	GTCTC	2 cut(s)	127, 285
BstMBI	GATC	1 cut(s)	478
BstMCI	CGRYCG	1 cut(s)	221
BstMWI	GCNNNNNNNGC	2 cut(s)	54, 223
BstNI	CCWGG	2 cut(s)	9, 237
BstNSI	RCATGY	1 cut(s)	754
BstSCI	CCNGG	3 cut(s)	7, 52, 235
BstUI	CGCG	3 cut(s)	217, 223, 356
BstV1I	GCAGC	1 cut(s)	581
Bsu36I	CCTNAGG	1 cut(s)	420
BsuI	GTATCC	1 cut(s)	35
BsuRI	GGCC	3 cut(s)	226, 257, 520
BtgI	CCRYGG	1 cut(s)	221
BtgZI	GCGATG	1 cut(s)	72
BtsCI	GGATG	4 cut(s)	200, 316, 502, 587
BtsIMutI	CAGTG	1 cut(s)	408
BtuMI	TCGCGA	1 cut(s)	217
BveI	ACCTGC	1 cut(s)	607
CfoI	GCGC	1 cut(s)	358
Cfr10I	RCCGGY	1 cut(s)	401
Cfr13I	GGNCC	1 cut(s)	424
Cfr42I	CCGCGG	1 cut(s)	224
CsiI	ACCWGGT	1 cut(s)	235
Csp6I	GTAC	2 cut(s)	16, 399
CviAII	CATG	3 cut(s)	99, 191, 751
CviJI	RGCY	8 cut(s)	71, 226, 257, 491, 520, 572, 603, 710
CviKI_1	RGCY	8 cut(s)	71, 226, 257, 491, 520, 572, 603, 710
CviQI	GTAC	2 cut(s)	16, 399
DdeI	CTNAG	1 cut(s)	420
DpnI	GATC	1 cut(s)	480
DpnII	GATC	1 cut(s)	478
EaeI	YGGCCR	2 cut(s)	255, 518
EciI	GGCGGA	1 cut(s)	363
Eco31I	GGTCTC	1 cut(s)	285
Eco47I	GGWCC	1 cut(s)	424
Eco81I	CCTNAGG	1 cut(s)	420
EcoO109I	RGGNCCY	1 cut(s)	424
EcoRII	CCWGG	2 cut(s)	7, 235
FaeI	CATG	3 cut(s)	102, 194, 754
FaqI	GGGAC	1 cut(s)	410
FatI	CATG	3 cut(s)	98, 190, 750
FauI	CCCGC	1 cut(s)	444
Fnu4HI	GCNGC	2 cut(s)	224, 570
FokI	GGATG	4 cut(s)	207, 303, 509, 574
Fsp4HI	GCNGC	2 cut(s)	224, 570
FspBI	CTAG	2 cut(s)	72, 564
GlaI	GCGC	1 cut(s)	357
GluI	GCNGC	2 cut(s)	224, 570
HaeIII	GGCC	3 cut(s)	226, 257, 520
HapII	CCGG	2 cut(s)	53, 402
HhaI	GCGC	1 cut(s)	358
Hin1II	CATG	3 cut(s)	102, 194, 754
Hin6I	GCGC	1 cut(s)	356
HinP1I	GCGC	1 cut(s)	356
HindIII	AAGCTT	1 cut(s)	708
HinfI	GANTC	3 cut(s)	347, 473, 527
HpaII	CCGG	2 cut(s)	53, 402
HphI	GGTGA	5 cut(s)	76, 128, 167, 314, 424
Hpy188I	TCNGA	4 cut(s)	38, 290, 478, 496
Hpy188III	TCNNGA	5 cut(s)	107, 216, 242, 272, 740
Hpy99I	CGWCG	1 cut(s)	366
HpyAV	CCTTC	5 cut(s)	6, 149, 197, 563, 724
HpyCH4III	ACNGT	2 cut(s)	412, 656
HpyF10VI	GCNNNNNNNGC	2 cut(s)	54, 223
HpyF3I	CTNAG	1 cut(s)	420
Hsp92II	CATG	3 cut(s)	102, 194, 754
HspAI	GCGC	1 cut(s)	356
KpnI	GGTACC	1 cut(s)	402
KspI	CCGCGG	1 cut(s)	224
Kzo9I	GATC	1 cut(s)	478
LmnI	GCTCC	3 cut(s)	150, 555, 613
Lsp1109I	GCAGC	1 cut(s)	581
LweI	GCATC	3 cut(s)	42, 185, 414
MabI	ACCWGGT	1 cut(s)	235
MaeI	CTAG	2 cut(s)	72, 564
MaeIII	GTNAC	1 cut(s)	619
MalI	GATC	1 cut(s)	480
MboI	GATC	1 cut(s)	478
MboII	GAAGA	3 cut(s)	652, 655, 707
MfeI	CAATTG	1 cut(s)	635
MlsI	TGGCCA	1 cut(s)	257
MluCI	AATT	1 cut(s)	635
MluNI	TGGCCA	1 cut(s)	257
MlyI	GAGTC	2 cut(s)	467, 536
Mox20I	TGGCCA	1 cut(s)	257
MroXI	GAANNNNTTC	1 cut(s)	699
MscI	TGGCCA	1 cut(s)	257
Msp20I	TGGCCA	1 cut(s)	257
MspA1I	CMGCKG	1 cut(s)	223
MspI	CCGG	2 cut(s)	53, 402
MspR9I	CCNGG	3 cut(s)	9, 54, 237
MunI	CAATTG	1 cut(s)	635
MvaI	CCWGG	2 cut(s)	9, 237
MvnI	CGCG	3 cut(s)	217, 223, 356
MwoI	GCNNNNNNNGC	2 cut(s)	54, 223
NciI	CCSGG	1 cut(s)	54
NdeII	GATC	1 cut(s)	478
NlaIII	CATG	3 cut(s)	102, 194, 754
NlaIV	GGNNCC	4 cut(s)	115, 400, 426, 502
NruI	TCGCGA	1 cut(s)	217
NspI	RCATGY	1 cut(s)	754
PciI	ACATGT	1 cut(s)	750
PdmI	GAANNNNTTC	1 cut(s)	699
PfeI	GAWTC	1 cut(s)	347
PflMI	CCANNNNNTGG	1 cut(s)	208
PkrI	GCNGC	2 cut(s)	225, 571
PleI	GAGTC	2 cut(s)	467, 535
PpsI	GAGTC	2 cut(s)	467, 535
PpuMI	RGGWCCY	1 cut(s)	424
PscI	ACATGT	1 cut(s)	750
Psp5II	RGGWCCY	1 cut(s)	424
Psp6I	CCWGG	2 cut(s)	7, 235
PspGI	CCWGG	2 cut(s)	7, 235
PspN4I	GGNNCC	4 cut(s)	115, 400, 426, 502
PspPI	GGNCC	1 cut(s)	424
PspPPI	RGGWCCY	1 cut(s)	424
RruI	TCGCGA	1 cut(s)	217
RsaI	GTAC	2 cut(s)	17, 400
RsaNI	GTAC	2 cut(s)	16, 399
SacII	CCGCGG	1 cut(s)	224
SatI	GCNGC	2 cut(s)	224, 570
Sau3AI	GATC	1 cut(s)	478
Sau96I	GGNCC	1 cut(s)	424
SchI	GAGTC	2 cut(s)	467, 536
ScrFI	CCNGG	3 cut(s)	9, 54, 237
SexAI	ACCWGGT	1 cut(s)	235
SfaNI	GCATC	3 cut(s)	42, 185, 414
Sfr303I	CCGCGG	1 cut(s)	224
SgrBI	CCGCGG	1 cut(s)	224
SinI	GGWCC	1 cut(s)	424
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
Sse9I	AATT	1 cut(s)	635
SsiI	CCGC	5 cut(s)	221, 223, 374, 437, 510
SspMI	CTAG	2 cut(s)	72, 564
StyD4I	CCNGG	3 cut(s)	7, 52, 235
TaaI	ACNGT	2 cut(s)	412, 656
TaqI	TCGA	3 cut(s)	241, 364, 525
TasI	AATT	1 cut(s)	635
TauI	GCSGC	1 cut(s)	226
TfiI	GAWTC	1 cut(s)	347
TscAI	CASTG	1 cut(s)	415
TseI	GCWGC	1 cut(s)	569
TspDTI	ATGAA	2 cut(s)	179, 725
TspGWI	ACGGA	2 cut(s)	137, 623
TspRI	CASTG	1 cut(s)	415
Van91I	CCANNNNNTGG	1 cut(s)	208
VpaK11BI	GGWCC	1 cut(s)	424
XceI	RCATGY	1 cut(s)	754
XmnI	GAANNNNTTC	1 cut(s)	699
XspI	CTAG	2 cut(s)	72, 564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.