RLG00000009366

Protein ROOT PRIMORDIUM DEFECTIVE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0006961
Physical Location & Seq
Reverse (-)
51719353 .. 51719860
508 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009366

Sequence Viewer

Length: 417 bp
ATGTCTCCCTTTCACTTCACCTTCCGCTCCGTCCTAAAACCCCACCAAACCTTCATGGACGCCACCGTAATTAAACTGGAGCCTTCCAAATCCCTGCCCATTTCCATCCTCACCAAAACCCGACACTTCCTCATGATTCCCACGCGCCCCGTCGAGTTTGTCTGCCAATACCCCTCTATTTTTGAGGAATTCCTGCTCGCCGGCATCATTGTTCAGCCTCACGTCCGCCTCACCCCGCAAGTCCTCGATCTGTTATCGTCGATTGAGAAAGACTCAGATCCTCTGCCAACTTCAGATGGCACCAAAACCACCGACTGGCCGTTCGAGTCTGGTTTGGGTATGCCTCTGCTCTGTCAAAGGACTAGGGCGGCTGCCAGGTTTGCGTTATCCTCGGTGAGTGGCTATACGGAGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PORR

Protein Analysis

139

Amino Acids

15.52

Weight (kDa)

6.41

Isoelectric Point (pI)

49.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PORR PF11955 22 - 87 1.3e-07 Plant organelle RNA recognition domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 299
AccB7I CCANNNNNTGG 1 cut(s) 315
AccBSI CCGCTC 1 cut(s) 27
AccII CGCG 1 cut(s) 145
AciI CCGC 4 cut(s) 25, 226, 236, 368
AclWI GGATC 1 cut(s) 272
AcoI YGGCCR 1 cut(s) 317
AcsI RAATTY 1 cut(s) 188
AcuI CTGAAG 1 cut(s) 276
AcyI GRCGYC 1 cut(s) 60
AfiI CCNNNNNNNGG 1 cut(s) 315
AjiI CACGTC 1 cut(s) 223
AjnI CCWGG 1 cut(s) 374
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 1 cut(s) 272
AoxI GGCC 1 cut(s) 317
ApeKI GCWGC 1 cut(s) 371
ApoI RAATTY 1 cut(s) 188
ArsI GACNNNNNNTTYG 2 cut(s) 305, 337
AspLEI GCGC 1 cut(s) 147
AsuHPI GGTGA 4 cut(s) 10, 103, 223, 406
BanI GGYRCC 1 cut(s) 299
BbvI GCAGC 1 cut(s) 358
BccI CCATC 2 cut(s) 113, 290
BceAI ACGGC 1 cut(s) 304
BciT130I CCWGG 1 cut(s) 376
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 1 cut(s) 363
BisI GCNGC 2 cut(s) 369, 372
BlsI GCNGC 2 cut(s) 370, 373
Bme1390I CCNGG 1 cut(s) 376
BmgBI CACGTC 1 cut(s) 223
BmiI GGNNCC 2 cut(s) 81, 301
BmrFI CCNGG 1 cut(s) 376
BmsI GCATC 1 cut(s) 213
BplI GAGNNNNNCTC 2 cut(s) 257, 289
BpmI CTGGAG 1 cut(s) 98
BsaHI GRCGYC 1 cut(s) 60
BsaJI CCNNGG 1 cut(s) 390
Bsc4I CCNNNNNNNGG 1 cut(s) 315
Bse118I RCCGGY 1 cut(s) 200
Bse1I ACTGG 2 cut(s) 81, 320
BseBI CCWGG 1 cut(s) 376
BseDI CCNNGG 1 cut(s) 390
BseGI GGATG 1 cut(s) 105
BseLI CCNNNNNNNGG 1 cut(s) 315
BseMII CTCAG 1 cut(s) 288
BseNI ACTGG 2 cut(s) 81, 320
BseXI GCAGC 1 cut(s) 358
Bsh1236I CGCG 1 cut(s) 145
BshFI GGCC 1 cut(s) 319
BshNI GGYRCC 1 cut(s) 299
BsiSI CCGG 1 cut(s) 201
BslI CCNNNNNNNGG 1 cut(s) 315
BsmAI GTCTC 1 cut(s) 9
BsnI GGCC 1 cut(s) 319
Bsp143I GATC 2 cut(s) 247, 277
BspACI CCGC 4 cut(s) 25, 226, 236, 368
BspANI GGCC 1 cut(s) 319
BspCNI CTCAG 1 cut(s) 287
BspFNI CGCG 1 cut(s) 145
BspHI TCATGA 1 cut(s) 132
BspLI GGNNCC 2 cut(s) 81, 301
BspPI GGATC 1 cut(s) 272
BspT107I GGYRCC 1 cut(s) 299
BsrBI CCGCTC 1 cut(s) 27
BsrFI RCCGGY 1 cut(s) 200
BsrI ACTGG 2 cut(s) 81, 320
BssAI RCCGGY 1 cut(s) 200
BssECI CCNNGG 1 cut(s) 390
BssMI GATC 2 cut(s) 247, 277
BssNI GRCGYC 1 cut(s) 60
Bst2UI CCWGG 1 cut(s) 376
Bst4CI ACNGT 1 cut(s) 67
BstACI GRCGYC 1 cut(s) 60
BstC8I GCNNGC 2 cut(s) 198, 202
BstDEI CTNAG 1 cut(s) 274
BstF5I GGATG 1 cut(s) 105
BstFNI CGCG 1 cut(s) 145
BstHHI GCGC 1 cut(s) 147
BstKTI GATC 2 cut(s) 250, 280
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 2 cut(s) 247, 277
BstMWI GCNNNNNNNGC 1 cut(s) 380
BstNI CCWGG 1 cut(s) 376
BstSCI CCNGG 1 cut(s) 374
BstUI CGCG 1 cut(s) 145
BstV1I GCAGC 1 cut(s) 358
BstX2I RGATCY 1 cut(s) 277
BstYI RGATCY 1 cut(s) 277
BsuRI GGCC 1 cut(s) 319
BtrI CACGTC 1 cut(s) 223
BtsCI GGATG 1 cut(s) 105
Cac8I GCNNGC 2 cut(s) 198, 202
CciI TCATGA 1 cut(s) 132
CfoI GCGC 1 cut(s) 147
Cfr10I RCCGGY 1 cut(s) 200
CseI GACGC 1 cut(s) 68
CviAII CATG 2 cut(s) 55, 133
CviJI RGCY 5 cut(s) 82, 217, 319, 371, 402
CviKI_1 RGCY 5 cut(s) 82, 217, 319, 371, 402
DdeI CTNAG 1 cut(s) 274
DpnI GATC 2 cut(s) 249, 279
DpnII GATC 2 cut(s) 247, 277
EaeI YGGCCR 1 cut(s) 317
EciI GGCGGA 1 cut(s) 215
Eco57I CTGAAG 1 cut(s) 276
EcoRI GAATTC 1 cut(s) 188
EcoRII CCWGG 1 cut(s) 374
FaeI CATG 2 cut(s) 58, 136
FaiI YATR 4 cut(s) 56, 134, 341, 405
FatI CATG 2 cut(s) 54, 132
FauI CCCGC 1 cut(s) 243
Fnu4HI GCNGC 2 cut(s) 369, 372
FokI GGATG 1 cut(s) 92
Fsp4HI GCNGC 2 cut(s) 369, 372
FspBI CTAG 1 cut(s) 363
GlaI GCGC 1 cut(s) 146
GluI GCNGC 2 cut(s) 369, 372
GsuI CTGGAG 1 cut(s) 98
HaeIII GGCC 1 cut(s) 319
HapII CCGG 1 cut(s) 201
HgaI GACGC 1 cut(s) 68
HhaI GCGC 1 cut(s) 147
Hin1I GRCGYC 1 cut(s) 60
Hin1II CATG 2 cut(s) 58, 136
Hin6I GCGC 1 cut(s) 145
HinP1I GCGC 1 cut(s) 145
HinfI GANTC 3 cut(s) 136, 272, 326
HpaII CCGG 1 cut(s) 201
HphI GGTGA 4 cut(s) 10, 103, 223, 406
Hpy188I TCNGA 2 cut(s) 277, 295
Hpy188III TCNNGA 1 cut(s) 133
Hpy99I CGWCG 2 cut(s) 155, 262
HpyAV CCTTC 3 cut(s) 31, 61, 93
HpyCH4III ACNGT 1 cut(s) 67
HpyCH4IV ACGT 1 cut(s) 222
HpyF10VI GCNNNNNNNGC 1 cut(s) 380
HpyF3I CTNAG 1 cut(s) 274
HpySE526I ACGT 1 cut(s) 222
Hsp92I GRCGYC 1 cut(s) 60
Hsp92II CATG 2 cut(s) 58, 136
HspAI GCGC 1 cut(s) 145
KroI GCCGGC 1 cut(s) 200
KroNI GCCGGC 1 cut(s) 202
Kzo9I GATC 2 cut(s) 247, 277
LmnI GCTCC 2 cut(s) 32, 79
LpnPI CCDG 8 cut(s) 62, 107, 206, 214, 301, 315, 361, 388
Lsp1109I GCAGC 1 cut(s) 358
LweI GCATC 1 cut(s) 213
MaeI CTAG 1 cut(s) 363
MaeII ACGT 1 cut(s) 222
MalI GATC 2 cut(s) 249, 279
MbiI CCGCTC 1 cut(s) 27
MboI GATC 2 cut(s) 247, 277
MflI RGATCY 1 cut(s) 277
MluCI AATT 2 cut(s) 69, 188
MlyI GAGTC 2 cut(s) 266, 335
MroNI GCCGGC 1 cut(s) 200
MseI TTAA 1 cut(s) 72
MspI CCGG 1 cut(s) 201
MspR9I CCNGG 1 cut(s) 376
MvaI CCWGG 1 cut(s) 376
MvnI CGCG 1 cut(s) 145
MwoI GCNNNNNNNGC 1 cut(s) 380
NaeI GCCGGC 1 cut(s) 202
NdeII GATC 2 cut(s) 247, 277
NgoMIV GCCGGC 1 cut(s) 200
NlaIII CATG 2 cut(s) 58, 136
NlaIV GGNNCC 2 cut(s) 81, 301
PagI TCATGA 1 cut(s) 132
PdiI GCCGGC 1 cut(s) 202
PfeI GAWTC 1 cut(s) 136
PflMI CCANNNNNTGG 1 cut(s) 315
PkrI GCNGC 2 cut(s) 370, 373
PleI GAGTC 2 cut(s) 266, 334
PpsI GAGTC 2 cut(s) 266, 334
Psp6I CCWGG 1 cut(s) 374
PspGI CCWGG 1 cut(s) 374
PspN4I GGNNCC 2 cut(s) 81, 301
PsuI RGATCY 1 cut(s) 277
SaqAI TTAA 1 cut(s) 72
SatI GCNGC 2 cut(s) 369, 372
Sau3AI GATC 2 cut(s) 247, 277
SchI GAGTC 2 cut(s) 266, 335
ScrFI CCNGG 1 cut(s) 376
SetI ASST 4 cut(s) 23, 53, 225, 380
SfaNI GCATC 1 cut(s) 213
Sse9I AATT 2 cut(s) 69, 188
SsiI CCGC 4 cut(s) 25, 226, 236, 368
SspMI CTAG 1 cut(s) 363
StyD4I CCNGG 1 cut(s) 374
TaaI ACNGT 1 cut(s) 67
TaiI ACGT 1 cut(s) 225
TaqI TCGA 4 cut(s) 153, 246, 260, 324
TasI AATT 2 cut(s) 69, 188
TauI GCSGC 1 cut(s) 371
TfiI GAWTC 1 cut(s) 136
Tru1I TTAA 1 cut(s) 72
Tru9I TTAA 1 cut(s) 72
TseI GCWGC 1 cut(s) 371
TspDTI ATGAA 1 cut(s) 43
TspGWI ACGGA 1 cut(s) 19
Van91I CCANNNNNTGG 1 cut(s) 315
XapI RAATTY 1 cut(s) 188
XspI CTAG 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.