Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8341479.1

Orthogroup ID

OG0006961

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 269

Gene Structure 269 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8341479.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 269 bp

cggcttcagatggcgcaaaaaccgccgaccggccgttcgggtcaggtttgggtatacctatgctcattcaaaggactagggcagctgccaagtctgggtcgtcctctacgagtggatatacagaggagcaggttacgattgtgaggcaattgaagaagaagaaggactgttatgagattttcgaggtggacagaagttgtagtgttgaagatgttcaaaaagcttataggaagctgtctttgaaggttcatctagataagaacatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

DUF1977 DnaJ

Protein Analysis

88

Amino Acids

9.73

Weight (kDa)

9.39

Isoelectric Point (pI)

22.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006961)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g11130
rosa_chinensis	RchiOBHm_Chr7g0188521
rosa_laevigata	RLG00000004687 RLG00000004984 RLG00000009366 RLG00000012138 RLG00000034231
rosa_multiflora	Rmu_co8341479.1_g000001 Rmu_sc0000530.1_g000015 Rmu_sc0011602.1_g000002 Rmu_sc0012200.1_g000002
rosa_roxburghii	Rroxscaffold_3G00241950 Rroxscaffold_3G00266340
rosa_rugosa	Rorug06G0491000 Rorug07G0169400 Rorug07G0234800
rosa_samantha	Rh2AG017400 Rh2DG018900 Rh3CG283500 Rh4DG076100 Rh7AG095800 Rh7BG097600 Rh7CG098400 Rh7CG266300 Rh7DG097700 Rh7DG256100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	120
AccI	GTMKAC	1 cut(s)	54
AciI	CCGC	1 cut(s)	23
AcoI	YGGCCR	1 cut(s)	31
AfiI	CCNNNNNNNGG	2 cut(s)	29, 95
AflIII	ACRYGT	1 cut(s)	263
AgsI	TTSAA	5 cut(s)	70, 153, 208, 217, 243
AluBI	AGCT	3 cut(s)	85, 223, 234
AluI	AGCT	3 cut(s)	85, 223, 234
AoxI	GGCC	1 cut(s)	31
ApeKI	GCWGC	2 cut(s)	82, 85
ArsI	GACNNNNNNTTYG	2 cut(s)	19, 51
Asp700I	GAANNNNTTC	1 cut(s)	212
AspLEI	GCGC	1 cut(s)	16
BbvI	GCAGC	2 cut(s)	72, 94
BccI	CCATC	1 cut(s)	4
BceAI	ACGGC	1 cut(s)	18
BfaI	CTAG	2 cut(s)	77, 253
BfuAI	ACCTGC	1 cut(s)	120
BisI	GCNGC	2 cut(s)	83, 86
BlsI	GCNGC	2 cut(s)	84, 87
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 95
Bse118I	RCCGGY	1 cut(s)	29
BseLI	CCNNNNNNNGG	2 cut(s)	29, 95
BseRI	GAGGAG	1 cut(s)	139
BseX3I	CGGCCG	1 cut(s)	31
BseXI	GCAGC	2 cut(s)	72, 94
Bsh1285I	CGRYCG	2 cut(s)	30, 34
BshFI	GGCC	1 cut(s)	33
BsiEI	CGRYCG	2 cut(s)	30, 34
BsiSI	CCGG	1 cut(s)	30
BslI	CCNNNNNNNGG	2 cut(s)	29, 95
BsnI	GGCC	1 cut(s)	33
BspACI	CCGC	1 cut(s)	23
BspANI	GGCC	1 cut(s)	33
BspMI	ACCTGC	1 cut(s)	120
BsrFI	RCCGGY	1 cut(s)	29
BssAI	RCCGGY	1 cut(s)	29
BssNAI	GTATAC	1 cut(s)	55
Bst1107I	GTATAC	1 cut(s)	55
Bst4CI	ACNGT	1 cut(s)	169
BstHHI	GCGC	1 cut(s)	16
BstMCI	CGRYCG	2 cut(s)	30, 34
BstMWI	GCNNNNNNNGC	1 cut(s)	22
BstNSI	RCATGY	1 cut(s)	267
BstV1I	GCAGC	2 cut(s)	72, 94
BstZ17I	GTATAC	1 cut(s)	55
BstZI	CGGCCG	1 cut(s)	31
BsuRI	GGCC	1 cut(s)	33
BveI	ACCTGC	1 cut(s)	120
CfoI	GCGC	1 cut(s)	16
Cfr10I	RCCGGY	1 cut(s)	29
CviAII	CATG	1 cut(s)	264
CviJI	RGCY	5 cut(s)	4, 33, 85, 223, 234
CviKI_1	RGCY	5 cut(s)	4, 33, 85, 223, 234
EaeI	YGGCCR	1 cut(s)	31
EagI	CGGCCG	1 cut(s)	31
EclXI	CGGCCG	1 cut(s)	31
Eco52I	CGGCCG	1 cut(s)	31
FaeI	CATG	1 cut(s)	267
FaiI	YATR	6 cut(s)	55, 61, 119, 173, 227, 265
FatI	CATG	1 cut(s)	263
FblI	GTMKAC	1 cut(s)	54
Fnu4HI	GCNGC	2 cut(s)	83, 86
Fsp4HI	GCNGC	2 cut(s)	83, 86
FspBI	CTAG	2 cut(s)	77, 253
GlaI	GCGC	1 cut(s)	15
GluI	GCNGC	2 cut(s)	83, 86
HaeIII	GGCC	1 cut(s)	33
HapII	CCGG	1 cut(s)	30
HhaI	GCGC	1 cut(s)	16
Hin1II	CATG	1 cut(s)	267
Hin6I	GCGC	1 cut(s)	14
HinP1I	GCGC	1 cut(s)	14
HindIII	AAGCTT	1 cut(s)	221
HpaII	CCGG	1 cut(s)	30
Hpy166II	GTNNAC	2 cut(s)	55, 189
Hpy188I	TCNGA	1 cut(s)	9
Hpy188III	TCNNGA	1 cut(s)	253
Hpy8I	GTNNAC	2 cut(s)	55, 189
HpyAV	CCTTC	2 cut(s)	156, 237
HpyCH4III	ACNGT	1 cut(s)	169
HpyF10VI	GCNNNNNNNGC	1 cut(s)	22
Hsp92II	CATG	1 cut(s)	267
HspAI	GCGC	1 cut(s)	14
LmnI	GCTCC	1 cut(s)	126
LpnPI	CCDG	4 cut(s)	29, 43, 80, 115
Lsp1109I	GCAGC	2 cut(s)	72, 94
MaeI	CTAG	2 cut(s)	77, 253
MaeIII	GTNAC	1 cut(s)	132
MboII	GAAGA	4 cut(s)	165, 168, 171, 220
MfeI	CAATTG	1 cut(s)	148
MluCI	AATT	1 cut(s)	148
MnlI	CCTC	4 cut(s)	114, 117, 137, 177
MroXI	GAANNNNTTC	1 cut(s)	212
MspA1I	CMGCKG	1 cut(s)	85
MspI	CCGG	1 cut(s)	30
MunI	CAATTG	1 cut(s)	148
MwoI	GCNNNNNNNGC	1 cut(s)	22
NlaIII	CATG	1 cut(s)	267
NspI	RCATGY	1 cut(s)	267
PciI	ACATGT	1 cut(s)	263
PcsI	WCGNNNNNNNCGW	1 cut(s)	106
PdmI	GAANNNNTTC	1 cut(s)	212
PkrI	GCNGC	2 cut(s)	84, 87
PscI	ACATGT	1 cut(s)	263
PvuII	CAGCTG	1 cut(s)	85
SatI	GCNGC	2 cut(s)	83, 86
SetI	ASST	8 cut(s)	48, 60, 87, 134, 188, 225, 236, 248
Sse9I	AATT	1 cut(s)	148
SsiI	CCGC	1 cut(s)	23
SspMI	CTAG	2 cut(s)	77, 253
TaaI	ACNGT	1 cut(s)	169
TaqI	TCGA	1 cut(s)	182
TasI	AATT	1 cut(s)	148
TseI	GCWGC	2 cut(s)	82, 85
TspDTI	ATGAA	1 cut(s)	238
XbaI	TCTAGA	1 cut(s)	252
XceI	RCATGY	1 cut(s)	267
XmiI	GTMKAC	1 cut(s)	54
XmnI	GAANNNNTTC	1 cut(s)	212
XspI	CTAG	2 cut(s)	77, 253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.