Rh7CG098400

DnaJ protein homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0006961
Physical Location & Seq
Forward (+)
7397275 .. 7397838
564 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG098400.1

Sequence Viewer

Length: 564 bp
ATGGATTGGCAGAGAGCTCCAAAGAAAAGCGATAGCCGTAGGAACTACTATGACATCCTTGAAGTGCCTAAGAATTCTTCCCCAGATGATCTGAAAAGGGCTTATAGAAGAGCAGCCATGAAGCACCATCCCGATAAGGGTGGTGATGTAGAAAAGTTCAAAGAGTTGGGCCATGCATACAAGGTTCTGTGCGATCCACAGCAACGTGTCATCTACGACCGGGACGGTGAGGATCAGTTTGGCGAGGACATGTATGGTGGGGACCGGTATGGCAAGGACCAGTACAACAAGGACCAATACGGTGAGTACAAGTACAGCCAGAACAGATACGGTCAGGACTGGTACTGGTACTGGTACTGGTACGGTTCGAACCAATACGGTCAGGACTGGTACGGGAATCGGTACGACCAGGGCTGGTACGGCCAGAACCGGTATGGTAAGGAAAAGTATAGCAAGGACCGAGATCAGACTGGCGAGCAAAGGGATGTAGTTAGACTAATCTGGTCCGTAGGTTTGATGGTTATTATTAGTTTGATTATTAAGTTATTTTTTGTTGGTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

187

Amino Acids

22.69

Weight (kDa)

7.7

Isoelectric Point (pI)

24.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 15 - 73 5.6e-21 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 188, 240
AcoI YGGCCR 1 cut(s) 421
AcsI RAATTY 1 cut(s) 73
AfiI CCNNNNNNNGG 1 cut(s) 137
AflIII ACRYGT 2 cut(s) 205, 249
AgeI ACCGGT 2 cut(s) 264, 429
AgsI TTSAA 2 cut(s) 62, 160
AjnI CCWGG 1 cut(s) 408
AluBI AGCT 1 cut(s) 17
AluI AGCT 1 cut(s) 17
Alw21I GWGCWC 1 cut(s) 19
AlwI GGATC 2 cut(s) 188, 240
AoxI GGCC 2 cut(s) 169, 421
ApeKI GCWGC 1 cut(s) 113
ApoI RAATTY 1 cut(s) 73
AsiGI ACCGGT 2 cut(s) 264, 429
AspS9I GGNCC 6 cut(s) 169, 262, 277, 292, 457, 504
AsuC2I CCSGG 1 cut(s) 221
AsuHPI GGTGA 3 cut(s) 155, 239, 314
AsuII TTCGAA 1 cut(s) 368
AvaII GGWCC 5 cut(s) 262, 277, 292, 457, 504
BanII GRGCYC 1 cut(s) 19
Bbv12I GWGCWC 1 cut(s) 19
BbvI GCAGC 1 cut(s) 125
BccI CCATC 2 cut(s) 135, 511
BceAI ACGGC 2 cut(s) 21, 436
BciT130I CCWGG 1 cut(s) 410
BcnI CCSGG 1 cut(s) 221
BisI GCNGC 1 cut(s) 114
BlsI GCNGC 1 cut(s) 115
Bme1390I CCNGG 2 cut(s) 221, 410
Bme18I GGWCC 5 cut(s) 262, 277, 292, 457, 504
BmgT120I GGNCC 6 cut(s) 169, 262, 277, 292, 457, 504
BmiI GGNNCC 1 cut(s) 263
BmrFI CCNGG 2 cut(s) 221, 410
Bpu14I TTCGAA 1 cut(s) 368
BpuMI CCSGG 1 cut(s) 221
BsaJI CCNNGG 1 cut(s) 409
BsaWI WCCGGW 2 cut(s) 264, 429
Bsc4I CCNNNNNNNGG 1 cut(s) 137
Bse118I RCCGGY 2 cut(s) 264, 429
Bse1I ACTGG 7 cut(s) 280, 344, 350, 356, 362, 392, 475
BseBI CCWGG 1 cut(s) 410
BseDI CCNNGG 1 cut(s) 409
BseGI GGATG 3 cut(s) 54, 127, 490
BseLI CCNNNNNNNGG 1 cut(s) 137
BseNI ACTGG 7 cut(s) 280, 344, 350, 356, 362, 392, 475
BseXI GCAGC 1 cut(s) 125
Bsh1285I CGRYCG 1 cut(s) 220
BshFI GGCC 2 cut(s) 171, 423
BshTI ACCGGT 2 cut(s) 264, 429
BsiEI CGRYCG 1 cut(s) 220
BsiHKAI GWGCWC 1 cut(s) 19
BsiSI CCGG 3 cut(s) 220, 265, 430
BslFI GGGAC 2 cut(s) 236, 275
BslI CCNNNNNNNGG 1 cut(s) 137
BsmFI GGGAC 2 cut(s) 236, 275
BsnI GGCC 2 cut(s) 171, 423
Bsp119I TTCGAA 1 cut(s) 368
Bsp1286I GDGCHC 1 cut(s) 19
Bsp143I GATC 4 cut(s) 88, 193, 232, 463
BspANI GGCC 2 cut(s) 171, 423
BspLI GGNNCC 1 cut(s) 263
BspPI GGATC 2 cut(s) 188, 240
BspQI GCTCTTC 1 cut(s) 103
BspT104I TTCGAA 1 cut(s) 368
BsrFI RCCGGY 2 cut(s) 264, 429
BsrI ACTGG 7 cut(s) 280, 344, 350, 356, 362, 392, 475
BssAI RCCGGY 2 cut(s) 264, 429
BssECI CCNNGG 1 cut(s) 409
BssMI GATC 4 cut(s) 88, 193, 232, 463
Bst2UI CCWGG 1 cut(s) 410
Bst4CI ACNGT 5 cut(s) 227, 302, 332, 365, 380
Bst6I CTCTTC 1 cut(s) 103
BstBI TTCGAA 1 cut(s) 368
BstC8I GCNNGC 1 cut(s) 476
BstDEI CTNAG 1 cut(s) 69
BstF5I GGATG 3 cut(s) 54, 127, 490
BstKTI GATC 4 cut(s) 91, 196, 235, 466
BstMBI GATC 4 cut(s) 88, 193, 232, 463
BstMCI CGRYCG 1 cut(s) 220
BstMWI GCNNNNNNNGC 1 cut(s) 420
BstNI CCWGG 1 cut(s) 410
BstNSI RCATGY 1 cut(s) 253
BstSCI CCNGG 2 cut(s) 219, 408
BstV1I GCAGC 1 cut(s) 125
BsuRI GGCC 2 cut(s) 171, 423
BtsCI GGATG 3 cut(s) 54, 127, 490
Cac8I GCNNGC 1 cut(s) 476
Cfr10I RCCGGY 2 cut(s) 264, 429
Cfr13I GGNCC 6 cut(s) 169, 262, 277, 292, 457, 504
CspAI ACCGGT 2 cut(s) 264, 429
CviAII CATG 3 cut(s) 118, 173, 250
CviJI RGCY 8 cut(s) 17, 36, 101, 116, 171, 318, 414, 423
CviKI_1 RGCY 8 cut(s) 17, 36, 101, 116, 171, 318, 414, 423
DdeI CTNAG 1 cut(s) 69
DpnI GATC 4 cut(s) 90, 195, 234, 465
DpnII GATC 4 cut(s) 88, 193, 232, 463
EaeI YGGCCR 1 cut(s) 421
Eam1104I CTCTTC 1 cut(s) 103
EarI CTCTTC 1 cut(s) 103
Ecl136II GAGCTC 1 cut(s) 17
Eco24I GRGCYC 1 cut(s) 19
Eco47I GGWCC 5 cut(s) 262, 277, 292, 457, 504
Eco53kI GAGCTC 1 cut(s) 17
EcoICRI GAGCTC 1 cut(s) 17
EcoRI GAATTC 1 cut(s) 73
EcoRII CCWGG 1 cut(s) 408
EcoT22I ATGCAT 1 cut(s) 178
EcoT38I GRGCYC 1 cut(s) 19
FaeI CATG 3 cut(s) 121, 176, 253
FaqI GGGAC 2 cut(s) 236, 275
FatI CATG 3 cut(s) 117, 172, 249
Fnu4HI GCNGC 1 cut(s) 114
FokI GGATG 3 cut(s) 41, 114, 497
FriOI GRGCYC 1 cut(s) 19
Fsp4HI GCNGC 1 cut(s) 114
GluI GCNGC 1 cut(s) 114
HaeIII GGCC 2 cut(s) 171, 423
HapII CCGG 3 cut(s) 220, 265, 430
Hin1II CATG 3 cut(s) 121, 176, 253
HinfI GANTC 1 cut(s) 397
HpaII CCGG 3 cut(s) 220, 265, 430
HphI GGTGA 3 cut(s) 155, 239, 314
Hpy188I TCNGA 2 cut(s) 93, 468
Hpy188III TCNNGA 3 cut(s) 131, 335, 383
HpyCH4III ACNGT 5 cut(s) 227, 302, 332, 365, 380
HpyCH4IV ACGT 1 cut(s) 205
HpyCH4V TGCA 1 cut(s) 176
HpyF10VI GCNNNNNNNGC 1 cut(s) 420
HpyF3I CTNAG 1 cut(s) 69
HpySE526I ACGT 1 cut(s) 205
Hsp92II CATG 3 cut(s) 121, 176, 253
Kzo9I GATC 4 cut(s) 88, 193, 232, 463
LguI GCTCTTC 1 cut(s) 103
LmnI GCTCC 1 cut(s) 22
Lsp1109I GCAGC 1 cut(s) 125
MaeII ACGT 1 cut(s) 205
MalI GATC 4 cut(s) 90, 195, 234, 465
MboI GATC 4 cut(s) 88, 193, 232, 463
MboII GAAGA 2 cut(s) 69, 120
MhlI GDGCHC 1 cut(s) 19
MluCI AATT 1 cut(s) 73
MnlI CCTC 2 cut(s) 223, 238
Mph1103I ATGCAT 1 cut(s) 178
MseI TTAA 1 cut(s) 540
MspI CCGG 3 cut(s) 220, 265, 430
MspR9I CCNGG 2 cut(s) 221, 410
MvaI CCWGG 1 cut(s) 410
MwoI GCNNNNNNNGC 1 cut(s) 420
NciI CCSGG 1 cut(s) 221
NdeII GATC 4 cut(s) 88, 193, 232, 463
NlaIII CATG 3 cut(s) 121, 176, 253
NlaIV GGNNCC 1 cut(s) 263
NsiI ATGCAT 1 cut(s) 178
NspI RCATGY 1 cut(s) 253
NspV TTCGAA 1 cut(s) 368
PciI ACATGT 1 cut(s) 249
PciSI GCTCTTC 1 cut(s) 103
PfeI GAWTC 1 cut(s) 397
PinAI ACCGGT 2 cut(s) 264, 429
PkrI GCNGC 1 cut(s) 115
PscI ACATGT 1 cut(s) 249
Psp124BI GAGCTC 1 cut(s) 19
Psp6I CCWGG 1 cut(s) 408
PspGI CCWGG 1 cut(s) 408
PspN4I GGNNCC 1 cut(s) 263
PspPI GGNCC 6 cut(s) 169, 262, 277, 292, 457, 504
SacI GAGCTC 1 cut(s) 19
SapI GCTCTTC 1 cut(s) 103
SaqAI TTAA 1 cut(s) 540
SatI GCNGC 1 cut(s) 114
Sau3AI GATC 4 cut(s) 88, 193, 232, 463
Sau96I GGNCC 6 cut(s) 169, 262, 277, 292, 457, 504
ScrFI CCNGG 2 cut(s) 221, 410
SduI GDGCHC 1 cut(s) 19
SetI ASST 4 cut(s) 19, 186, 208, 514
SfuI TTCGAA 1 cut(s) 368
SinI GGWCC 5 cut(s) 262, 277, 292, 457, 504
Sse9I AATT 1 cut(s) 73
SstI GAGCTC 1 cut(s) 19
StyD4I CCNGG 2 cut(s) 219, 408
TaaI ACNGT 5 cut(s) 227, 302, 332, 365, 380
TaiI ACGT 1 cut(s) 208
TaqI TCGA 1 cut(s) 368
TaqII GACCGA 1 cut(s) 474
TasI AATT 1 cut(s) 73
TatI WGTACW 3 cut(s) 282, 306, 312
TfiI GAWTC 1 cut(s) 397
Tru1I TTAA 1 cut(s) 540
Tru9I TTAA 1 cut(s) 540
TseI GCWGC 1 cut(s) 113
TspDTI ATGAA 1 cut(s) 134
TspGWI ACGGA 1 cut(s) 496
VpaK11BI GGWCC 5 cut(s) 262, 277, 292, 457, 504
XapI RAATTY 1 cut(s) 73
XceI RCATGY 1 cut(s) 253
XcmI CCANNNNNNNNNTGG 1 cut(s) 431
Zsp2I ATGCAT 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.