Rh4DG076100

Protein ROOT PRIMORDIUM DEFECTIVE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0006961
Physical Location & Seq
Forward (+)
11210763 .. 11211047
285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG076100.1

Sequence Viewer

Length: 285 bp
ATGGACGCCACCATAAACTGGGTTCGCGACCATGGCCTCGAAAATGTGGTTGAGAGGGAGAGAAACCTTCGGCCAATCATCAACATCAAGAACCTCATCAAATCAGAGCCCTCCAAATCCCTCCCCATTTCCATCCTCACCAAAACCCGACACTCCCTCATGATCCCCACATGCCCTGTCGAGTTTGGCCGCCAATACCCATCTATTTTCGAGGAGTTCTTGCCCACCAGCATCGCCGTCCACGTCCGTAACCCCACAAGTCCTCGATCTGTTATCATCGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PORR

Protein Analysis

94

Amino Acids

10.77

Weight (kDa)

9.03

Isoelectric Point (pI)

50.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PORR PF11955 8 - 74 2.2e-15 Plant organelle RNA recognition domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 18
AccII CGCG 1 cut(s) 27
AciI CCGC 1 cut(s) 190
AclWI GGATC 1 cut(s) 157
AcoI YGGCCR 2 cut(s) 71, 187
AcyI GRCGYC 1 cut(s) 6
AfiI CCNNNNNNNGG 1 cut(s) 18
AjiI CACGTC 1 cut(s) 244
AlwI GGATC 1 cut(s) 157
AoxI GGCC 3 cut(s) 34, 71, 187
AsuHPI GGTGA 1 cut(s) 130
BanII GRGCYC 1 cut(s) 111
BccI CCATC 2 cut(s) 140, 208
BceAI ACGGC 1 cut(s) 221
BisI GCNGC 1 cut(s) 190
BlsI GCNGC 1 cut(s) 191
BmgBI CACGTC 1 cut(s) 244
BmrI ACTGGG 1 cut(s) 28
BmsI GCATC 1 cut(s) 240
BmuI ACTGGG 1 cut(s) 28
Bsa29I ATCGAT 1 cut(s) 279
BsaHI GRCGYC 1 cut(s) 6
BsaJI CCNNGG 1 cut(s) 31
Bsc4I CCNNNNNNNGG 1 cut(s) 18
Bse1I ACTGG 1 cut(s) 23
BseCI ATCGAT 1 cut(s) 279
BseDI CCNNGG 1 cut(s) 31
BseGI GGATG 1 cut(s) 132
BseLI CCNNNNNNNGG 1 cut(s) 18
BseNI ACTGG 1 cut(s) 23
BseRI GAGGAG 1 cut(s) 227
Bsh1236I CGCG 1 cut(s) 27
BshFI GGCC 3 cut(s) 36, 73, 189
BshVI ATCGAT 1 cut(s) 279
BslI CCNNNNNNNGG 1 cut(s) 18
BsnI GGCC 3 cut(s) 36, 73, 189
Bsp1286I GDGCHC 1 cut(s) 111
Bsp143I GATC 2 cut(s) 162, 266
Bsp19I CCATGG 1 cut(s) 31
Bsp68I TCGCGA 1 cut(s) 27
BspACI CCGC 1 cut(s) 190
BspANI GGCC 3 cut(s) 36, 73, 189
BspDI ATCGAT 1 cut(s) 279
BspFNI CGCG 1 cut(s) 27
BspHI TCATGA 1 cut(s) 159
BspPI GGATC 1 cut(s) 157
BsrI ACTGG 1 cut(s) 23
BssECI CCNNGG 1 cut(s) 31
BssMI GATC 2 cut(s) 162, 266
BssNI GRCGYC 1 cut(s) 6
BssT1I CCWWGG 1 cut(s) 31
BstACI GRCGYC 1 cut(s) 6
BstDSI CCRYGG 1 cut(s) 31
BstF5I GGATG 1 cut(s) 132
BstFNI CGCG 1 cut(s) 27
BstKTI GATC 2 cut(s) 165, 269
BstMBI GATC 2 cut(s) 162, 266
BstMWI GCNNNNNNNGC 1 cut(s) 33
BstNSI RCATGY 1 cut(s) 174
BstUI CGCG 1 cut(s) 27
Bsu15I ATCGAT 1 cut(s) 279
BsuRI GGCC 3 cut(s) 36, 73, 189
BsuTUI ATCGAT 1 cut(s) 279
BtgI CCRYGG 1 cut(s) 31
BtgZI GCGATG 1 cut(s) 217
BtrI CACGTC 1 cut(s) 244
BtsCI GGATG 1 cut(s) 132
BtuMI TCGCGA 1 cut(s) 27
CciI TCATGA 1 cut(s) 159
ClaI ATCGAT 1 cut(s) 279
CseI GACGC 1 cut(s) 14
CviAII CATG 3 cut(s) 32, 160, 171
CviJI RGCY 4 cut(s) 36, 73, 109, 189
CviKI_1 RGCY 4 cut(s) 36, 73, 109, 189
DpnI GATC 2 cut(s) 164, 268
DpnII GATC 2 cut(s) 162, 266
EaeI YGGCCR 2 cut(s) 71, 187
Eco130I CCWWGG 1 cut(s) 31
Eco24I GRGCYC 1 cut(s) 111
EcoT14I CCWWGG 1 cut(s) 31
EcoT38I GRGCYC 1 cut(s) 111
ErhI CCWWGG 1 cut(s) 31
FaeI CATG 3 cut(s) 35, 163, 174
FaiI YATR 4 cut(s) 14, 33, 161, 172
FatI CATG 3 cut(s) 31, 159, 170
Fnu4HI GCNGC 1 cut(s) 190
FokI GGATG 1 cut(s) 119
FriOI GRGCYC 1 cut(s) 111
Fsp4HI GCNGC 1 cut(s) 190
GluI GCNGC 1 cut(s) 190
HaeIII GGCC 3 cut(s) 36, 73, 189
HgaI GACGC 1 cut(s) 14
Hin1I GRCGYC 1 cut(s) 6
Hin1II CATG 3 cut(s) 35, 163, 174
HphI GGTGA 1 cut(s) 130
Hpy166II GTNNAC 1 cut(s) 241
Hpy188I TCNGA 1 cut(s) 106
Hpy188III TCNNGA 3 cut(s) 26, 88, 160
Hpy8I GTNNAC 1 cut(s) 241
HpyAV CCTTC 1 cut(s) 77
HpyCH4IV ACGT 1 cut(s) 243
HpyF10VI GCNNNNNNNGC 1 cut(s) 33
HpySE526I ACGT 1 cut(s) 243
Hsp92I GRCGYC 1 cut(s) 6
Hsp92II CATG 3 cut(s) 35, 163, 174
Kzo9I GATC 2 cut(s) 162, 266
LpnPI CCDG 3 cut(s) 4, 189, 241
LweI GCATC 1 cut(s) 240
MaeII ACGT 1 cut(s) 243
MaeIII GTNAC 1 cut(s) 248
MalI GATC 2 cut(s) 164, 268
MboI GATC 2 cut(s) 162, 266
MhlI GDGCHC 1 cut(s) 111
MnlI CCTC 9 cut(s) 47, 48, 104, 121, 131, 146, 167, 205, 273
MvnI CGCG 1 cut(s) 27
MwoI GCNNNNNNNGC 1 cut(s) 33
NcoI CCATGG 1 cut(s) 31
NdeII GATC 2 cut(s) 162, 266
NlaIII CATG 3 cut(s) 35, 163, 174
NruI TCGCGA 1 cut(s) 27
NspI RCATGY 1 cut(s) 174
PagI TCATGA 1 cut(s) 159
PcsI WCGNNNNNNNCGW 1 cut(s) 240
PflMI CCANNNNNTGG 1 cut(s) 18
PkrI GCNGC 1 cut(s) 191
RruI TCGCGA 1 cut(s) 27
SatI GCNGC 1 cut(s) 190
Sau3AI GATC 2 cut(s) 162, 266
SduI GDGCHC 1 cut(s) 111
SetI ASST 3 cut(s) 69, 96, 246
SfaNI GCATC 1 cut(s) 240
SsiI CCGC 1 cut(s) 190
StyI CCWWGG 1 cut(s) 31
TaiI ACGT 1 cut(s) 246
TaqI TCGA 5 cut(s) 39, 180, 210, 265, 279
TauI GCSGC 1 cut(s) 192
TspGWI ACGGA 1 cut(s) 236
Van91I CCANNNNNTGG 1 cut(s) 18
XceI RCATGY 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.