Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0006961

Physical Location & Seq

Genomic Coordinates Reverse (-)

26112269 .. 26112667

Gene Structure 399 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG266300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGATTCCCACGCGCCCCTTCGAGTTTGTCCGCCAATACCCCTCTACTTTCGAGGAGTTCCTGCTCGCCCACATCGCTGTTCAGCCTCACGTCCGCCTTACCCCACAAGTCTTTGATCTGTTATCGTCGATTGAGAAAGACTCCGATCCTCTGCCGGCTTCAAATGGCGCCAAAACCGCCGACCGGCAGTTCGAGTCAGGTTTGGGTATGCCTATGCTTCTTCAAAGGACTAGGGCGACTGCCAAGTCCGGGTCGTCCTCTACGAGTGGATATACAGAGGAGCAGGTTACGATTGTGAGGCAATTGAAGAAGAAGAAGAAGGATTGTTATGAGATTTTGGGGGTGGACAGAAGTTGTAGTGTTGAAGATGTTCAAAAAGCTTATAGGAAGCTGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

DUF1977 DnaJ

Protein Analysis

132

Amino Acids

14.85

Weight (kDa)

8.93

Isoelectric Point (pI)

50.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006961)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g11130
rosa_chinensis	RchiOBHm_Chr7g0188521
rosa_laevigata	RLG00000004687 RLG00000004984 RLG00000009366 RLG00000012138 RLG00000034231
rosa_multiflora	Rmu_co8341479.1_g000001 Rmu_sc0000530.1_g000015 Rmu_sc0011602.1_g000002 Rmu_sc0012200.1_g000002
rosa_roxburghii	Rroxscaffold_3G00241950 Rroxscaffold_3G00266340
rosa_rugosa	Rorug06G0491000 Rorug07G0169400 Rorug07G0234800
rosa_samantha	Rh2AG017400 Rh2DG018900 Rh3CG283500 Rh4DG076100 Rh7AG095800 Rh7BG097600 Rh7CG098400 Rh7CG266300 Rh7DG097700 Rh7DG256100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	244
Acc36I	ACCTGC	1 cut(s)	274
AccB1I	GGYRCC	1 cut(s)	167
AccII	CGCG	1 cut(s)	13
AciI	CCGC	3 cut(s)	31, 94, 177
AclWI	GGATC	1 cut(s)	140
AcyI	GRCGYC	1 cut(s)	168
AfiI	CCNNNNNNNGG	2 cut(s)	183, 249
AgsI	TTSAA	5 cut(s)	162, 224, 307, 365, 374
AjiI	CACGTC	1 cut(s)	91
AluBI	AGCT	2 cut(s)	380, 391
AluI	AGCT	2 cut(s)	380, 391
AlwI	GGATC	1 cut(s)	140
ArsI	GACNNNNNNTTYG	2 cut(s)	173, 205
Asp700I	GAANNNNTTC	1 cut(s)	369
AspLEI	GCGC	2 cut(s)	15, 170
AsuC2I	CCSGG	1 cut(s)	250
BanI	GGYRCC	1 cut(s)	167
BcnI	CCSGG	1 cut(s)	250
BfaI	CTAG	1 cut(s)	231
BfoI	RGCGCY	1 cut(s)	171
BfuAI	ACCTGC	1 cut(s)	274
Bme1390I	CCNGG	1 cut(s)	250
BmgBI	CACGTC	1 cut(s)	91
BmiI	GGNNCC	1 cut(s)	169
BmrFI	CCNGG	1 cut(s)	250
BplI	GAGNNNNNCTC	2 cut(s)	125, 157
BpuMI	CCSGG	1 cut(s)	250
BsaHI	GRCGYC	1 cut(s)	168
Bsc4I	CCNNNNNNNGG	2 cut(s)	183, 249
Bse118I	RCCGGY	2 cut(s)	154, 183
BseLI	CCNNNNNNNGG	2 cut(s)	183, 249
BseRI	GAGGAG	2 cut(s)	68, 293
Bsh1236I	CGCG	1 cut(s)	13
Bsh1285I	CGRYCG	1 cut(s)	184
BshNI	GGYRCC	1 cut(s)	167
BsiEI	CGRYCG	1 cut(s)	184
BsiSI	CCGG	3 cut(s)	155, 184, 249
BslI	CCNNNNNNNGG	2 cut(s)	183, 249
Bsp143I	GATC	2 cut(s)	115, 145
BspACI	CCGC	3 cut(s)	31, 94, 177
BspFNI	CGCG	1 cut(s)	13
BspLI	GGNNCC	1 cut(s)	169
BspMI	ACCTGC	1 cut(s)	274
BspPI	GGATC	1 cut(s)	140
BspT107I	GGYRCC	1 cut(s)	167
BsrFI	RCCGGY	2 cut(s)	154, 183
BssAI	RCCGGY	2 cut(s)	154, 183
BssMI	GATC	2 cut(s)	115, 145
BssNI	GRCGYC	1 cut(s)	168
BstACI	GRCGYC	1 cut(s)	168
BstC8I	GCNNGC	2 cut(s)	66, 156
BstFNI	CGCG	1 cut(s)	13
BstH2I	RGCGCY	1 cut(s)	171
BstHHI	GCGC	2 cut(s)	15, 170
BstKTI	GATC	2 cut(s)	118, 148
BstMBI	GATC	2 cut(s)	115, 145
BstMCI	CGRYCG	1 cut(s)	184
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 176
BstSCI	CCNGG	1 cut(s)	248
BstUI	CGCG	1 cut(s)	13
BtgZI	GCGATG	1 cut(s)	58
BtrI	CACGTC	1 cut(s)	91
BveI	ACCTGC	1 cut(s)	274
Cac8I	GCNNGC	2 cut(s)	66, 156
CfoI	GCGC	2 cut(s)	15, 170
Cfr10I	RCCGGY	2 cut(s)	154, 183
CviJI	RGCY	4 cut(s)	85, 158, 380, 391
CviKI_1	RGCY	4 cut(s)	85, 158, 380, 391
DinI	GGCGCC	1 cut(s)	169
DpnI	GATC	2 cut(s)	117, 147
DpnII	GATC	2 cut(s)	115, 145
DrdI	GACNNNNNNGTC	1 cut(s)	244
DseDI	GACNNNNNNGTC	1 cut(s)	244
EciI	GGCGGA	2 cut(s)	20, 83
EgeI	GGCGCC	1 cut(s)	169
EheI	GGCGCC	1 cut(s)	169
FaiI	YATR	5 cut(s)	209, 215, 273, 330, 384
FspBI	CTAG	1 cut(s)	231
GlaI	GCGC	2 cut(s)	14, 169
HaeII	RGCGCY	1 cut(s)	171
HapII	CCGG	3 cut(s)	155, 184, 249
HhaI	GCGC	2 cut(s)	15, 170
Hin1I	GRCGYC	1 cut(s)	168
Hin6I	GCGC	2 cut(s)	13, 168
HinP1I	GCGC	2 cut(s)	13, 168
HindIII	AAGCTT	1 cut(s)	378
HinfI	GANTC	3 cut(s)	4, 140, 194
HpaII	CCGG	3 cut(s)	155, 184, 249
Hpy166II	GTNNAC	1 cut(s)	346
Hpy188I	TCNGA	1 cut(s)	145
Hpy188III	TCNNGA	1 cut(s)	396
Hpy8I	GTNNAC	1 cut(s)	346
Hpy99I	CGWCG	1 cut(s)	130
HpyAV	CCTTC	2 cut(s)	28, 313
HpyCH4IV	ACGT	1 cut(s)	90
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 176
HpySE526I	ACGT	1 cut(s)	90
Hsp92I	GRCGYC	1 cut(s)	168
HspAI	GCGC	2 cut(s)	13, 168
KasI	GGCGCC	1 cut(s)	167
KroI	GCCGGC	1 cut(s)	154
KroNI	GCCGGC	1 cut(s)	156
Kzo9I	GATC	2 cut(s)	115, 145
LmnI	GCTCC	1 cut(s)	280
LpnPI	CCDG	6 cut(s)	74, 168, 183, 197, 262, 269
MaeI	CTAG	1 cut(s)	231
MaeII	ACGT	1 cut(s)	90
MaeIII	GTNAC	1 cut(s)	286
MalI	GATC	2 cut(s)	117, 147
MboI	GATC	2 cut(s)	115, 145
MboII	GAAGA	6 cut(s)	212, 319, 322, 325, 328, 377
MfeI	CAATTG	1 cut(s)	302
MluCI	AATT	1 cut(s)	302
Mly113I	GGCGCC	1 cut(s)	168
MlyI	GAGTC	2 cut(s)	134, 203
MnlI	CCTC	7 cut(s)	46, 52, 96, 159, 268, 271, 291
MroNI	GCCGGC	1 cut(s)	154
MroXI	GAANNNNTTC	1 cut(s)	369
MspI	CCGG	3 cut(s)	155, 184, 249
MspR9I	CCNGG	1 cut(s)	250
MunI	CAATTG	1 cut(s)	302
MvnI	CGCG	1 cut(s)	13
MwoI	GCNNNNNNNGC	2 cut(s)	74, 176
NaeI	GCCGGC	1 cut(s)	156
NarI	GGCGCC	1 cut(s)	168
NciI	CCSGG	1 cut(s)	250
NdeII	GATC	2 cut(s)	115, 145
NgoMIV	GCCGGC	1 cut(s)	154
NlaIV	GGNNCC	1 cut(s)	169
PcsI	WCGNNNNNNNCGW	1 cut(s)	260
PdiI	GCCGGC	1 cut(s)	156
PdmI	GAANNNNTTC	1 cut(s)	369
PfeI	GAWTC	1 cut(s)	4
PleI	GAGTC	2 cut(s)	134, 202
PluTI	GGCGCC	1 cut(s)	171
PpsI	GAGTC	2 cut(s)	134, 202
PspN4I	GGNNCC	1 cut(s)	169
Sau3AI	GATC	2 cut(s)	115, 145
SchI	GAGTC	2 cut(s)	134, 203
ScrFI	CCNGG	1 cut(s)	250
SetI	ASST	5 cut(s)	93, 202, 288, 382, 393
SfoI	GGCGCC	1 cut(s)	169
Sse9I	AATT	1 cut(s)	302
SsiI	CCGC	3 cut(s)	31, 94, 177
SspDI	GGCGCC	1 cut(s)	167
SspMI	CTAG	1 cut(s)	231
StyD4I	CCNGG	1 cut(s)	248
TaiI	ACGT	1 cut(s)	93
TaqI	TCGA	4 cut(s)	21, 51, 128, 192
TasI	AATT	1 cut(s)	302
TfiI	GAWTC	1 cut(s)	4
XmnI	GAANNNNTTC	1 cut(s)	369
XspI	CTAG	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.