Rh3CG283500

Chaperone protein dnaJ 49-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0006961
Physical Location & Seq
Reverse (-)
28511700 .. 28512005
306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG283500.1

Sequence Viewer

Length: 306 bp
ATGCTATTGTCGATTGAGAAAGACTCTGATCCTTGGTTGGCTTCGGATGGCACCAAAACCGCCGACTGGCCGTTCGAGTCAAGTTTGGGTATGCCTATGCTCCTTCAAAGGACTAGGGCAGCTTCCAAGTCTGGGTCATCCTCTGCGAGTGGCTATACGGAGGAGCAGGTTACGATTGCGAGGCAATTGAAGAAGAAGCAGGACTGTTATGAGATTTTGGGGGTGGAGAGAAGTTGTAGTGTTGAAGATGTTCAAAAAGCTTATAGGAAGTTGTCTTTGAAGGTTCATCTGGATAAGAACATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
DUF1977 DnaJ

Protein Analysis

101

Amino Acids

11.3

Weight (kDa)

7.74

Isoelectric Point (pI)

48.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 68 - 100 2.4e-09 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 157
AccB1I GGYRCC 1 cut(s) 50
AciI CCGC 1 cut(s) 60
AclWI GGATC 1 cut(s) 23
AcoI YGGCCR 1 cut(s) 68
AfiI CCNNNNNNNGG 2 cut(s) 66, 132
AflIII ACRYGT 1 cut(s) 300
AgsI TTSAA 5 cut(s) 107, 190, 245, 254, 280
AluBI AGCT 2 cut(s) 122, 260
AluI AGCT 2 cut(s) 122, 260
AlwI GGATC 1 cut(s) 23
AoxI GGCC 1 cut(s) 68
ApeKI GCWGC 1 cut(s) 119
ArsI GACNNNNNNTTYG 2 cut(s) 56, 88
Asp700I GAANNNNTTC 1 cut(s) 249
BanI GGYRCC 1 cut(s) 50
BbvI GCAGC 1 cut(s) 131
BccI CCATC 1 cut(s) 41
BceAI ACGGC 1 cut(s) 55
BfaI CTAG 1 cut(s) 114
BfuAI ACCTGC 1 cut(s) 157
BisI GCNGC 1 cut(s) 120
BlsI GCNGC 1 cut(s) 121
BmiI GGNNCC 1 cut(s) 52
BplI GAGNNNNNCTC 2 cut(s) 8, 40
BsaJI CCNNGG 1 cut(s) 32
Bsc4I CCNNNNNNNGG 2 cut(s) 66, 132
Bse1I ACTGG 1 cut(s) 71
BseDI CCNNGG 1 cut(s) 32
BseGI GGATG 2 cut(s) 52, 137
BseLI CCNNNNNNNGG 2 cut(s) 66, 132
BseNI ACTGG 1 cut(s) 71
BseRI GAGGAG 1 cut(s) 176
BseXI GCAGC 1 cut(s) 131
BshFI GGCC 1 cut(s) 70
BshNI GGYRCC 1 cut(s) 50
BslI CCNNNNNNNGG 2 cut(s) 66, 132
BsnI GGCC 1 cut(s) 70
Bsp143I GATC 1 cut(s) 28
BspACI CCGC 1 cut(s) 60
BspANI GGCC 1 cut(s) 70
BspLI GGNNCC 1 cut(s) 52
BspMI ACCTGC 1 cut(s) 157
BspPI GGATC 1 cut(s) 23
BspT107I GGYRCC 1 cut(s) 50
BsrI ACTGG 1 cut(s) 71
BssECI CCNNGG 1 cut(s) 32
BssMI GATC 1 cut(s) 28
BssT1I CCWWGG 1 cut(s) 32
Bst4CI ACNGT 1 cut(s) 206
BstF5I GGATG 2 cut(s) 52, 137
BstKTI GATC 1 cut(s) 31
BstMBI GATC 1 cut(s) 28
BstNSI RCATGY 1 cut(s) 304
BstV1I GCAGC 1 cut(s) 131
BsuRI GGCC 1 cut(s) 70
BtsCI GGATG 2 cut(s) 52, 137
BveI ACCTGC 1 cut(s) 157
CviAII CATG 1 cut(s) 301
CviJI RGCY 5 cut(s) 41, 70, 122, 153, 260
CviKI_1 RGCY 5 cut(s) 41, 70, 122, 153, 260
DpnI GATC 1 cut(s) 30
DpnII GATC 1 cut(s) 28
EaeI YGGCCR 1 cut(s) 68
Eco130I CCWWGG 1 cut(s) 32
EcoT14I CCWWGG 1 cut(s) 32
ErhI CCWWGG 1 cut(s) 32
FaeI CATG 1 cut(s) 304
FaiI YATR 6 cut(s) 92, 98, 156, 210, 264, 302
FatI CATG 1 cut(s) 300
Fnu4HI GCNGC 1 cut(s) 120
FokI GGATG 2 cut(s) 59, 124
Fsp4HI GCNGC 1 cut(s) 120
FspBI CTAG 1 cut(s) 114
GluI GCNGC 1 cut(s) 120
HaeIII GGCC 1 cut(s) 70
Hin1II CATG 1 cut(s) 304
HindIII AAGCTT 1 cut(s) 258
HinfI GANTC 2 cut(s) 23, 77
Hpy188I TCNGA 2 cut(s) 28, 46
Hpy188III TCNNGA 1 cut(s) 290
HpyAV CCTTC 2 cut(s) 113, 274
HpyCH4III ACNGT 1 cut(s) 206
Hsp92II CATG 1 cut(s) 304
Kzo9I GATC 1 cut(s) 28
LmnI GCTCC 2 cut(s) 105, 163
LpnPI CCDG 5 cut(s) 52, 117, 152, 185, 275
Lsp1109I GCAGC 1 cut(s) 131
MaeI CTAG 1 cut(s) 114
MaeIII GTNAC 1 cut(s) 169
MalI GATC 1 cut(s) 30
MboI GATC 1 cut(s) 28
MboII GAAGA 3 cut(s) 202, 205, 257
MfeI CAATTG 1 cut(s) 185
MluCI AATT 1 cut(s) 185
MlyI GAGTC 2 cut(s) 17, 86
MnlI CCTC 3 cut(s) 151, 154, 174
MroXI GAANNNNTTC 1 cut(s) 249
MunI CAATTG 1 cut(s) 185
NdeII GATC 1 cut(s) 28
NlaIII CATG 1 cut(s) 304
NlaIV GGNNCC 1 cut(s) 52
NspI RCATGY 1 cut(s) 304
PciI ACATGT 1 cut(s) 300
PdmI GAANNNNTTC 1 cut(s) 249
PkrI GCNGC 1 cut(s) 121
PleI GAGTC 2 cut(s) 17, 85
PpsI GAGTC 2 cut(s) 17, 85
PscI ACATGT 1 cut(s) 300
PspN4I GGNNCC 1 cut(s) 52
SatI GCNGC 1 cut(s) 120
Sau3AI GATC 1 cut(s) 28
SchI GAGTC 2 cut(s) 17, 86
SetI ASST 4 cut(s) 124, 171, 262, 285
Sse9I AATT 1 cut(s) 185
SsiI CCGC 1 cut(s) 60
SspMI CTAG 1 cut(s) 114
StyI CCWWGG 1 cut(s) 32
TaaI ACNGT 1 cut(s) 206
TaqI TCGA 2 cut(s) 11, 75
TasI AATT 1 cut(s) 185
TseI GCWGC 1 cut(s) 119
TspDTI ATGAA 1 cut(s) 275
TspGWI ACGGA 1 cut(s) 173
XceI RCATGY 1 cut(s) 304
XmnI GAANNNNTTC 1 cut(s) 249
XspI CTAG 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.