Rorug07G0234800

Chaperone protein dnaJ 49-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
21531717 .. 21532010
294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0234800.1

Sequence Viewer

Length: 294 bp
ATGATTACTGTTATTAATGACGTCACACCGGCACAGGCTGTAGAGTTTTCACCAGAGAAGTTGCCTAACGCCACAATCAAAGCGGGTGCGGATTACAAGTTGAGCATAGCAGAGAATGTTAGTCAAAGTTGCGTTGCACTGAGGGAGGACTTTTACATTGCAGCTTTTGACTATTATCAGCCTTCTCGAGACTACGGTAAAACGGTGTATTGGTTGATGAATAAAGATGGGATTCATCTGAGTTGGGATAAATCTACATGGAAGAAAATTGTTAAATGGACTTTTAAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

97

Amino Acids

11.19

Weight (kDa)

6.57

Isoelectric Point (pI)

33.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 24
AciI CCGC 2 cut(s) 83, 89
AcyI GRCGYC 1 cut(s) 21
AluBI AGCT 1 cut(s) 164
AluI AGCT 1 cut(s) 164
Alw26I GTCTC 1 cut(s) 183
Ama87I CYCGRG 1 cut(s) 186
ApeKI GCWGC 1 cut(s) 161
AseI ATTAAT 1 cut(s) 15
AsuHPI GGTGA 1 cut(s) 42
AvaI CYCGRG 1 cut(s) 186
BbvI GCAGC 1 cut(s) 173
BccI CCATC 1 cut(s) 221
BcoDI GTCTC 1 cut(s) 183
BfmI CTRYAG 1 cut(s) 39
BisI GCNGC 1 cut(s) 162
BlsI GCNGC 1 cut(s) 163
BmeT110I CYCGRG 1 cut(s) 186
BsaHI GRCGYC 1 cut(s) 21
Bse118I RCCGGY 1 cut(s) 28
Bse3DI GCAATG 1 cut(s) 156
BseMI GCAATG 1 cut(s) 156
BseMII CTCAG 2 cut(s) 131, 230
BseXI GCAGC 1 cut(s) 173
BsiHKCI CYCGRG 1 cut(s) 186
BsiSI CCGG 1 cut(s) 29
BsmAI GTCTC 1 cut(s) 183
BsoBI CYCGRG 1 cut(s) 186
BspACI CCGC 2 cut(s) 83, 89
BspCNI CTCAG 2 cut(s) 132, 231
BsrDI GCAATG 1 cut(s) 156
BsrFI RCCGGY 1 cut(s) 28
BssAI RCCGGY 1 cut(s) 28
BssNI GRCGYC 1 cut(s) 21
Bst4CI ACNGT 3 cut(s) 10, 197, 205
BstACI GRCGYC 1 cut(s) 21
BstDEI CTNAG 2 cut(s) 140, 239
BstMAI GTCTC 1 cut(s) 183
BstSFI CTRYAG 1 cut(s) 39
BstV1I GCAGC 1 cut(s) 173
BtsIMutI CAGTG 1 cut(s) 137
Cfr10I RCCGGY 1 cut(s) 28
CviAII CATG 1 cut(s) 258
CviJI RGCY 3 cut(s) 38, 164, 181
CviKI_1 RGCY 3 cut(s) 38, 164, 181
DdeI CTNAG 2 cut(s) 140, 239
DraI TTTAAA 1 cut(s) 286
Eco88I CYCGRG 1 cut(s) 186
FaeI CATG 1 cut(s) 261
FaiI YATR 2 cut(s) 107, 259
FatI CATG 1 cut(s) 257
FauI CCCGC 1 cut(s) 76
Fnu4HI GCNGC 1 cut(s) 162
Fsp4HI GCNGC 1 cut(s) 162
GluI GCNGC 1 cut(s) 162
HapII CCGG 1 cut(s) 29
Hin1I GRCGYC 1 cut(s) 21
Hin1II CATG 1 cut(s) 261
HinfI GANTC 1 cut(s) 232
HpaII CCGG 1 cut(s) 29
HphI GGTGA 1 cut(s) 42
Hpy188I TCNGA 1 cut(s) 240
Hpy188III TCNNGA 2 cut(s) 186, 188
HpyAV CCTTC 1 cut(s) 192
HpyCH4III ACNGT 3 cut(s) 10, 197, 205
HpyCH4IV ACGT 1 cut(s) 21
HpyCH4V TGCA 2 cut(s) 137, 161
HpyF3I CTNAG 2 cut(s) 140, 239
HpySE526I ACGT 1 cut(s) 21
Hsp92I GRCGYC 1 cut(s) 21
Hsp92II CATG 1 cut(s) 261
LpnPI CCDG 3 cut(s) 20, 42, 66
Lsp1109I GCAGC 1 cut(s) 173
MaeII ACGT 1 cut(s) 21
MaeIII GTNAC 1 cut(s) 22
MboII GAAGA 1 cut(s) 274
MluCI AATT 1 cut(s) 267
MnlI CCTC 2 cut(s) 135, 139
MseI TTAA 3 cut(s) 15, 273, 285
MspI CCGG 1 cut(s) 29
NlaIII CATG 1 cut(s) 261
NmuCI GTSAC 1 cut(s) 22
PaeR7I CTCGAG 1 cut(s) 186
PfeI GAWTC 1 cut(s) 232
PkrI GCNGC 1 cut(s) 163
PshBI ATTAAT 1 cut(s) 15
SaqAI TTAA 3 cut(s) 15, 273, 285
SatI GCNGC 1 cut(s) 162
SetI ASST 2 cut(s) 24, 166
SfcI CTRYAG 1 cut(s) 39
Sfr274I CTCGAG 1 cut(s) 186
SgeI CNNG 8 cut(s) 41, 47, 65, 96, 109, 198, 200, 270
SlaI CTCGAG 1 cut(s) 186
SmlI CTYRAG 1 cut(s) 186
SmoI CTYRAG 1 cut(s) 186
Sse9I AATT 1 cut(s) 267
SsiI CCGC 2 cut(s) 83, 89
TaaI ACNGT 3 cut(s) 10, 197, 205
TaiI ACGT 1 cut(s) 24
TaqI TCGA 1 cut(s) 187
TasI AATT 1 cut(s) 267
TfiI GAWTC 1 cut(s) 232
Tru1I TTAA 3 cut(s) 15, 273, 285
Tru9I TTAA 3 cut(s) 15, 273, 285
TscAI CASTG 1 cut(s) 144
TseFI GTSAC 1 cut(s) 22
TseI GCWGC 1 cut(s) 161
Tsp45I GTSAC 1 cut(s) 22
TspDTI ATGAA 2 cut(s) 224, 233
TspRI CASTG 1 cut(s) 144
VspI ATTAAT 1 cut(s) 15
XhoI CTCGAG 1 cut(s) 186
ZraI GACGTC 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.