Rh7DG256100

Protein ROOT PRIMORDIUM DEFECTIVE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0006961
Physical Location & Seq
Reverse (-)
26762201 .. 26762497
297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG256100.1

Sequence Viewer

Length: 297 bp
ATGATTCCCACACGCCCCTTCGAGTTTGTTCGCCAATACCCCTATACTTTCGAGGAGTTCCTGCTCGCCAACATCGCTGTTCAACCTCATGTCTACCTCACCCTGCAAGTCTTTGATCTATTATCGTCGATTGAGAAAGACTCTGATCCTCTGCTGGCTTCAGATGGCGCCAAAACCGCTGACCGGCCGTTCGGGTCAGGTTTGGGATGCCTATGCTCCTTCAAAGGACTAGGGCGGCTACCAAGTCCGGGTCGTCCTCTACGAGTGGATATACAGAGGAGCAGGTTACGATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PORR

Protein Analysis

98

Amino Acids

11.01

Weight (kDa)

8.74

Isoelectric Point (pI)

57.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 273
AccB1I GGYRCC 1 cut(s) 167
AccI GTMKAC 1 cut(s) 93
AciI CCGC 2 cut(s) 177, 235
AclWI GGATC 1 cut(s) 140
AcoI YGGCCR 1 cut(s) 185
AcuI CTGAAG 1 cut(s) 144
AcyI GRCGYC 1 cut(s) 168
AfiI CCNNNNNNNGG 2 cut(s) 183, 248
AgsI TTSAA 2 cut(s) 83, 223
AlwI GGATC 1 cut(s) 140
AoxI GGCC 1 cut(s) 185
ArsI GACNNNNNNTTYG 2 cut(s) 173, 205
AspLEI GCGC 1 cut(s) 170
AsuC2I CCSGG 1 cut(s) 249
AsuHPI GGTGA 1 cut(s) 91
BanI GGYRCC 1 cut(s) 167
BccI CCATC 1 cut(s) 158
BceAI ACGGC 1 cut(s) 172
BcnI CCSGG 1 cut(s) 249
BfaI CTAG 1 cut(s) 230
BfoI RGCGCY 1 cut(s) 171
BfuAI ACCTGC 1 cut(s) 273
BisI GCNGC 1 cut(s) 236
BlsI GCNGC 1 cut(s) 237
Bme1390I CCNGG 1 cut(s) 249
BmiI GGNNCC 1 cut(s) 169
BmrFI CCNGG 1 cut(s) 249
BmsI GCATC 1 cut(s) 197
BplI GAGNNNNNCTC 2 cut(s) 125, 157
BpuMI CCSGG 1 cut(s) 249
BsaHI GRCGYC 1 cut(s) 168
Bsc4I CCNNNNNNNGG 2 cut(s) 183, 248
Bse118I RCCGGY 1 cut(s) 183
BseGI GGATG 1 cut(s) 212
BseLI CCNNNNNNNGG 2 cut(s) 183, 248
BseRI GAGGAG 2 cut(s) 68, 292
BseX3I CGGCCG 1 cut(s) 185
Bsh1285I CGRYCG 1 cut(s) 188
BshFI GGCC 1 cut(s) 187
BshNI GGYRCC 1 cut(s) 167
BsiEI CGRYCG 1 cut(s) 188
BsiSI CCGG 2 cut(s) 184, 248
BslI CCNNNNNNNGG 2 cut(s) 183, 248
BsnI GGCC 1 cut(s) 187
Bsp143I GATC 2 cut(s) 115, 145
BspACI CCGC 2 cut(s) 177, 235
BspANI GGCC 1 cut(s) 187
BspLI GGNNCC 1 cut(s) 169
BspMI ACCTGC 1 cut(s) 273
BspPI GGATC 1 cut(s) 140
BspT107I GGYRCC 1 cut(s) 167
BsrFI RCCGGY 1 cut(s) 183
BssAI RCCGGY 1 cut(s) 183
BssMI GATC 2 cut(s) 115, 145
BssNI GRCGYC 1 cut(s) 168
BstACI GRCGYC 1 cut(s) 168
BstC8I GCNNGC 2 cut(s) 66, 156
BstF5I GGATG 1 cut(s) 212
BstH2I RGCGCY 1 cut(s) 171
BstHHI GCGC 1 cut(s) 170
BstKTI GATC 2 cut(s) 118, 148
BstMBI GATC 2 cut(s) 115, 145
BstMCI CGRYCG 1 cut(s) 188
BstMWI GCNNNNNNNGC 2 cut(s) 74, 176
BstSCI CCNGG 1 cut(s) 247
BstZI CGGCCG 1 cut(s) 185
BsuRI GGCC 1 cut(s) 187
BtgZI GCGATG 1 cut(s) 58
BtsCI GGATG 1 cut(s) 212
BveI ACCTGC 1 cut(s) 273
Cac8I GCNNGC 2 cut(s) 66, 156
CfoI GCGC 1 cut(s) 170
Cfr10I RCCGGY 1 cut(s) 183
CviAII CATG 1 cut(s) 89
CviJI RGCY 3 cut(s) 158, 187, 238
CviKI_1 RGCY 3 cut(s) 158, 187, 238
DinI GGCGCC 1 cut(s) 169
DpnI GATC 2 cut(s) 117, 147
DpnII GATC 2 cut(s) 115, 145
EaeI YGGCCR 1 cut(s) 185
EagI CGGCCG 1 cut(s) 185
EclXI CGGCCG 1 cut(s) 185
Eco52I CGGCCG 1 cut(s) 185
Eco57I CTGAAG 1 cut(s) 144
EgeI GGCGCC 1 cut(s) 169
EheI GGCGCC 1 cut(s) 169
FaeI CATG 1 cut(s) 92
FaiI YATR 4 cut(s) 45, 90, 214, 272
FatI CATG 1 cut(s) 88
FblI GTMKAC 1 cut(s) 93
Fnu4HI GCNGC 1 cut(s) 236
FokI GGATG 1 cut(s) 219
Fsp4HI GCNGC 1 cut(s) 236
FspBI CTAG 1 cut(s) 230
GlaI GCGC 1 cut(s) 169
GluI GCNGC 1 cut(s) 236
HaeII RGCGCY 1 cut(s) 171
HaeIII GGCC 1 cut(s) 187
HapII CCGG 2 cut(s) 184, 248
HhaI GCGC 1 cut(s) 170
Hin1I GRCGYC 1 cut(s) 168
Hin1II CATG 1 cut(s) 92
Hin6I GCGC 1 cut(s) 168
HinP1I GCGC 1 cut(s) 168
HinfI GANTC 2 cut(s) 4, 140
HpaII CCGG 2 cut(s) 184, 248
HphI GGTGA 1 cut(s) 91
Hpy166II GTNNAC 1 cut(s) 94
Hpy188I TCNGA 2 cut(s) 145, 163
Hpy8I GTNNAC 1 cut(s) 94
Hpy99I CGWCG 1 cut(s) 130
HpyAV CCTTC 2 cut(s) 28, 229
HpyCH4V TGCA 1 cut(s) 106
HpyF10VI GCNNNNNNNGC 2 cut(s) 74, 176
Hsp92I GRCGYC 1 cut(s) 168
Hsp92II CATG 1 cut(s) 92
HspAI GCGC 1 cut(s) 168
KasI GGCGCC 1 cut(s) 167
Kzo9I GATC 2 cut(s) 115, 145
LmnI GCTCC 2 cut(s) 221, 279
LpnPI CCDG 7 cut(s) 74, 116, 140, 183, 197, 261, 268
LweI GCATC 1 cut(s) 197
MaeI CTAG 1 cut(s) 230
MaeIII GTNAC 1 cut(s) 285
MalI GATC 2 cut(s) 117, 147
MboI GATC 2 cut(s) 115, 145
Mly113I GGCGCC 1 cut(s) 168
MlyI GAGTC 1 cut(s) 134
MnlI CCTC 6 cut(s) 46, 96, 107, 159, 267, 270
MspA1I CMGCKG 1 cut(s) 179
MspI CCGG 2 cut(s) 184, 248
MspR9I CCNGG 1 cut(s) 249
MwoI GCNNNNNNNGC 2 cut(s) 74, 176
NarI GGCGCC 1 cut(s) 168
NciI CCSGG 1 cut(s) 249
NdeII GATC 2 cut(s) 115, 145
NlaIII CATG 1 cut(s) 92
NlaIV GGNNCC 1 cut(s) 169
PcsI WCGNNNNNNNCGW 1 cut(s) 259
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 1 cut(s) 237
PleI GAGTC 1 cut(s) 134
PluTI GGCGCC 1 cut(s) 171
PpsI GAGTC 1 cut(s) 134
PspN4I GGNNCC 1 cut(s) 169
SatI GCNGC 1 cut(s) 236
Sau3AI GATC 2 cut(s) 115, 145
SchI GAGTC 1 cut(s) 134
ScrFI CCNGG 1 cut(s) 249
SetI ASST 4 cut(s) 88, 99, 202, 287
SfaNI GCATC 1 cut(s) 197
SfoI GGCGCC 1 cut(s) 169
SsiI CCGC 2 cut(s) 177, 235
SspDI GGCGCC 1 cut(s) 167
SspMI CTAG 1 cut(s) 230
StyD4I CCNGG 1 cut(s) 247
TaqI TCGA 3 cut(s) 21, 51, 128
TauI GCSGC 1 cut(s) 238
TfiI GAWTC 1 cut(s) 4
XmiI GTMKAC 1 cut(s) 93
XspI CTAG 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.