Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000530.1

Orthogroup ID

OG0006961

Physical Location & Seq

Genomic Coordinates Forward (+)

58942 .. 65842

Gene Structure 6901 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000530.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

atgtttggaggaggtaagccgcccaagaagagcgataactccaagtactatgagattcttggagtctccaagactgccgcgccggaagatttgaagaaggcttacaagaaagccgccatcaagaaccatcctgataagggcggagatcctgaaaaatttaaagagttggctcaggcttatgaggttcttagtgacccggaaaagcgggaaatttatgatcagtacggcgaggatggactcaaggaaggaatgggaggaccggagccaggcgaggagacgagatcggaatttggggacagagagatccattattgggaaattggagcgggtgatccaagtgggagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

115

Amino Acids

12.67

Weight (kDa)

5.0

Isoelectric Point (pI)

44.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006961)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g11130
rosa_chinensis	RchiOBHm_Chr7g0188521
rosa_laevigata	RLG00000004687 RLG00000004984 RLG00000009366 RLG00000012138 RLG00000034231
rosa_multiflora	Rmu_co8341479.1_g000001 Rmu_sc0000530.1_g000015 Rmu_sc0011602.1_g000002 Rmu_sc0012200.1_g000002
rosa_roxburghii	Rroxscaffold_3G00241950 Rroxscaffold_3G00266340
rosa_rugosa	Rorug06G0491000 Rorug07G0169400 Rorug07G0234800
rosa_samantha	Rh2AG017400 Rh2DG018900 Rh3CG283500 Rh4DG076100 Rh7AG095800 Rh7BG097600 Rh7CG098400 Rh7CG266300 Rh7DG097700 Rh7DG256100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	326
AccII	CGCG	1 cut(s)	80
AciI	CCGC	6 cut(s)	20, 78, 114, 141, 205, 326
AclWI	GGATC	3 cut(s)	140, 298, 326
AcsI	RAATTY	3 cut(s)	155, 210, 287
AfaI	GTAC	2 cut(s)	47, 224
AfiI	CCNNNNNNNGG	3 cut(s)	137, 266, 313
AgsI	TTSAA	1 cut(s)	94
AjnI	CCWGG	1 cut(s)	265
Alw26I	GTCTC	2 cut(s)	70, 269
AlwI	GGATC	3 cut(s)	140, 298, 326
ApoI	RAATTY	3 cut(s)	155, 210, 287
AspLEI	GCGC	1 cut(s)	82
AspS9I	GGNCC	1 cut(s)	257
AsuC2I	CCSGG	1 cut(s)	197
AsuHPI	GGTGA	1 cut(s)	341
AvaII	GGWCC	1 cut(s)	257
BarI	GAAGNNNNNNTAC	2 cut(s)	86, 118
BccI	CCATC	3 cut(s)	125, 135, 227
BceAI	ACGGC	1 cut(s)	241
BciT130I	CCWGG	1 cut(s)	267
BclI	TGATCA	1 cut(s)	217
BcnI	CCSGG	1 cut(s)	197
BcoDI	GTCTC	2 cut(s)	70, 269
BisI	GCNGC	3 cut(s)	20, 78, 114
BlsI	GCNGC	3 cut(s)	21, 79, 115
BmcAI	AGTACT	1 cut(s)	47
Bme1390I	CCNGG	2 cut(s)	197, 267
Bme18I	GGWCC	1 cut(s)	257
BmgT120I	GGNCC	1 cut(s)	257
BmiI	GGNNCC	1 cut(s)	264
BmrFI	CCNGG	2 cut(s)	197, 267
Bpu10I	CCTNAGC	1 cut(s)	171
BpuEI	CTTGAG	1 cut(s)	224
BpuMI	CCSGG	1 cut(s)	197
BsaWI	WCCGGW	1 cut(s)	259
Bsc4I	CCNNNNNNNGG	3 cut(s)	137, 266, 313
BseBI	CCWGG	1 cut(s)	267
BseGI	GGATG	2 cut(s)	127, 238
BseLI	CCNNNNNNNGG	3 cut(s)	137, 266, 313
BseMII	CTCAG	1 cut(s)	185
BseRI	GAGGAG	2 cut(s)	24, 287
Bsh1236I	CGCG	1 cut(s)	80
BsiSI	CCGG	3 cut(s)	83, 197, 260
BslFI	GGGAC	1 cut(s)	308
BslI	CCNNNNNNNGG	3 cut(s)	137, 266, 313
BsmAI	GTCTC	2 cut(s)	70, 269
BsmBI	CGTCTC	1 cut(s)	269
BsmFI	GGGAC	1 cut(s)	308
Bsp143I	GATC	5 cut(s)	145, 217, 281, 303, 331
BspACI	CCGC	6 cut(s)	20, 78, 114, 141, 205, 326
BspCNI	CTCAG	1 cut(s)	184
BspFNI	CGCG	1 cut(s)	80
BspLI	GGNNCC	1 cut(s)	264
BspPI	GGATC	3 cut(s)	140, 298, 326
BspQI	GCTCTTC	1 cut(s)	23
BsrBI	CCGCTC	1 cut(s)	326
BssMI	GATC	5 cut(s)	145, 217, 281, 303, 331
Bst2UI	CCWGG	1 cut(s)	267
Bst6I	CTCTTC	1 cut(s)	23
BstDEI	CTNAG	2 cut(s)	171, 188
BstF5I	GGATG	2 cut(s)	127, 238
BstFNI	CGCG	1 cut(s)	80
BstHHI	GCGC	1 cut(s)	82
BstKTI	GATC	5 cut(s)	148, 220, 284, 306, 334
BstMAI	GTCTC	2 cut(s)	70, 269
BstMBI	GATC	5 cut(s)	145, 217, 281, 303, 331
BstNI	CCWGG	1 cut(s)	267
BstSCI	CCNGG	2 cut(s)	195, 265
BstUI	CGCG	1 cut(s)	80
BstX2I	RGATCY	2 cut(s)	145, 303
BstYI	RGATCY	2 cut(s)	145, 303
BtsCI	GGATG	2 cut(s)	127, 238
CfoI	GCGC	1 cut(s)	82
Cfr13I	GGNCC	1 cut(s)	257
Csp6I	GTAC	2 cut(s)	46, 223
CviJI	RGCY	6 cut(s)	19, 101, 113, 170, 176, 265
CviKI_1	RGCY	6 cut(s)	19, 101, 113, 170, 176, 265
CviQI	GTAC	2 cut(s)	46, 223
DdeI	CTNAG	2 cut(s)	171, 188
DpnI	GATC	5 cut(s)	147, 219, 283, 305, 333
DpnII	GATC	5 cut(s)	145, 217, 281, 303, 331
DraI	TTTAAA	1 cut(s)	160
Eam1104I	CTCTTC	1 cut(s)	23
EarI	CTCTTC	1 cut(s)	23
EciI	GGCGGA	1 cut(s)	156
Eco47I	GGWCC	1 cut(s)	257
EcoRII	CCWGG	1 cut(s)	265
Esp3I	CGTCTC	1 cut(s)	269
FaiI	YATR	3 cut(s)	51, 180, 216
FaqI	GGGAC	1 cut(s)	308
FauI	CCCGC	2 cut(s)	198, 319
FbaI	TGATCA	1 cut(s)	217
Fnu4HI	GCNGC	3 cut(s)	20, 78, 114
FokI	GGATG	2 cut(s)	114, 245
Fsp4HI	GCNGC	3 cut(s)	20, 78, 114
GlaI	GCGC	1 cut(s)	81
GluI	GCNGC	3 cut(s)	20, 78, 114
HapII	CCGG	3 cut(s)	83, 197, 260
HhaI	GCGC	1 cut(s)	82
Hin6I	GCGC	1 cut(s)	80
HinP1I	GCGC	1 cut(s)	80
HinfI	GANTC	3 cut(s)	55, 63, 237
HpaII	CCGG	3 cut(s)	83, 197, 260
HphI	GGTGA	1 cut(s)	341
Hpy188I	TCNGA	1 cut(s)	286
Hpy188III	TCNNGA	3 cut(s)	121, 131, 149
HpyAV	CCTTC	2 cut(s)	91, 239
HpyF3I	CTNAG	2 cut(s)	171, 188
HspAI	GCGC	1 cut(s)	80
Ksp22I	TGATCA	1 cut(s)	217
Kzo9I	GATC	5 cut(s)	145, 217, 281, 303, 331
LguI	GCTCTTC	1 cut(s)	23
LmnI	GCTCC	2 cut(s)	262, 323
LpnPI	CCDG	8 cut(s)	96, 144, 158, 162, 210, 252, 273, 279
MaeIII	GTNAC	1 cut(s)	191
MalI	GATC	5 cut(s)	147, 219, 283, 305, 333
MbiI	CCGCTC	1 cut(s)	326
MboI	GATC	5 cut(s)	145, 217, 281, 303, 331
MboII	GAAGA	3 cut(s)	40, 98, 106
MflI	RGATCY	2 cut(s)	145, 303
MluCI	AATT	4 cut(s)	155, 210, 287, 318
MlyI	GAGTC	2 cut(s)	72, 231
MnlI	CCTC	5 cut(s)	5, 175, 223, 248, 265
MseI	TTAA	1 cut(s)	159
MspI	CCGG	3 cut(s)	83, 197, 260
MspR9I	CCNGG	2 cut(s)	197, 267
MvaI	CCWGG	1 cut(s)	267
MvnI	CGCG	1 cut(s)	80
NciI	CCSGG	1 cut(s)	197
NdeII	GATC	5 cut(s)	145, 217, 281, 303, 331
NlaIV	GGNNCC	1 cut(s)	264
NmuCI	GTSAC	1 cut(s)	191
PciSI	GCTCTTC	1 cut(s)	23
PfeI	GAWTC	1 cut(s)	55
PkrI	GCNGC	3 cut(s)	21, 79, 115
PleI	GAGTC	2 cut(s)	71, 231
PpsI	GAGTC	2 cut(s)	71, 231
Psp6I	CCWGG	1 cut(s)	265
PspGI	CCWGG	1 cut(s)	265
PspN4I	GGNNCC	1 cut(s)	264
PspPI	GGNCC	1 cut(s)	257
PsuI	RGATCY	2 cut(s)	145, 303
RsaI	GTAC	2 cut(s)	47, 224
RsaNI	GTAC	2 cut(s)	46, 223
SapI	GCTCTTC	1 cut(s)	23
SaqAI	TTAA	1 cut(s)	159
SatI	GCNGC	3 cut(s)	20, 78, 114
Sau3AI	GATC	5 cut(s)	145, 217, 281, 303, 331
Sau96I	GGNCC	1 cut(s)	257
ScaI	AGTACT	1 cut(s)	47
SchI	GAGTC	2 cut(s)	72, 231
ScrFI	CCNGG	2 cut(s)	197, 267
SetI	ASST	2 cut(s)	16, 186
SinI	GGWCC	1 cut(s)	257
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
Sse9I	AATT	4 cut(s)	155, 210, 287, 318
SsiI	CCGC	6 cut(s)	20, 78, 114, 141, 205, 326
StyD4I	CCNGG	2 cut(s)	195, 265
TasI	AATT	4 cut(s)	155, 210, 287, 318
TatI	WGTACW	1 cut(s)	45
TauI	GCSGC	3 cut(s)	22, 80, 116
TfiI	GAWTC	1 cut(s)	55
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TseFI	GTSAC	1 cut(s)	191
Tsp45I	GTSAC	1 cut(s)	191
VpaK11BI	GGWCC	1 cut(s)	257
XapI	RAATTY	3 cut(s)	155, 210, 287
ZrmI	AGTACT	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.