Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0003619

Physical Location & Seq

Genomic Coordinates Reverse (-)

10748206 .. 10748769

Gene Structure 564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006813

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGAGGATTTGGGCACCCGGTCTCTTGAAGCTCTCCCGATTGCGGCCACCGTCATTGAACCCTCAGATCGGGGCACATCAGCGTCGCCTCTTGCCTTCCATCTCTAGGCACTGGAAACGCGTCTGCGGCTGGGGCGAACCTGCTTTCCAATCCCAACCTCAATCTACTAGTTGTAATGCTCGCCAATCAACAGCCATCAGGAGCTGCCTAGCCGTTGCTTGCCAGACTGCCTCCTTCGAGATCAACAGATCTCTCATTCTCTTCGCTGTCCAACCCAACCAAGACTGCGATTTTAGTCGCCCCCATTTTGGTTGCCAAGAATATAATTCAACGATCAAGTCCTCTACAGTTTCCTCCTTGCTTGCTGTTCTCGTCGAGTCGAGATTGTTCTGGCGAGATGTGGTTGTAGTGAAAGCACCCAGCCTTTGGCATGGATGGGTTGTCGTTAGAGAAACGTCGACGTTAGAGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

158

Amino Acids

17.64

Weight (kDa)

9.98

Isoelectric Point (pI)

70.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003619)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03280 AT5G17350
fragaria_vesca	FvH4_1g29020 FvH4_4g26170
malus_domestica	MD00G1054000.v1.1 MD09G1258400.v1.1 MD13G1028700.v1.1 MD16G1031400.v1.1
prunus_persica	Prupe.1G321600_v2.0.a1 Prupe.3G150600_v2.0.a1
pyrus_communis	pycom09g17340 pycom13g02700 pycom16g02740
rosa_chinensis	RchiOBHm_Chr3g0493681 RchiOBHm_Chr4g0433741
rosa_laevigata	RLG00000006734 RLG00000006813 RLG00000022695
rosa_multiflora	Rmu_co8212850.1_g000001 Rmu_co8336625.1_g000001 Rmu_sc0000568.1_g000022 Rmu_sc0002912.1_g000002
rosa_roxburghii	Rroxscaffold_5G00375180
rosa_rugosa	Rorug03G0263400 Rorug04G0271300
rosa_samantha	Rh3AG312400 Rh3BG348200 Rh3CG346000 Rh3DG348500 Rh4AG325700 Rh4BG333500 Rh4CG348700 Rh4DG330100
rosa_wichuraiana	Rw3G027400 Rw4G028210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	148
AccB1I	GGYRCC	1 cut(s)	13
AccB7I	CCANNNNNTGG	1 cut(s)	426
AccI	GTMKAC	1 cut(s)	458
AccII	CGCG	1 cut(s)	120
AciI	CCGC	2 cut(s)	43, 126
AcoI	YGGCCR	1 cut(s)	44
AfiI	CCNNNNNNNGG	5 cut(s)	42, 68, 105, 308, 426
AflIII	ACRYGT	1 cut(s)	118
AgsI	TTSAA	3 cut(s)	28, 58, 330
AhlI	ACTAGT	1 cut(s)	167
AloI	GAACNNNNNNTCC	2 cut(s)	129, 161
AluBI	AGCT	2 cut(s)	31, 204
AluI	AGCT	2 cut(s)	31, 204
Alw26I	GTCTC	1 cut(s)	26
AlwNI	CAGNNNCTG	1 cut(s)	204
AoxI	GGCC	1 cut(s)	44
ApeKI	GCWGC	1 cut(s)	204
AsuC2I	CCSGG	1 cut(s)	18
BaeGI	GKGCMC	2 cut(s)	16, 76
BanI	GGYRCC	1 cut(s)	13
BbvI	GCAGC	1 cut(s)	191
BccI	CCATC	3 cut(s)	107, 203, 429
BceAI	ACGGC	1 cut(s)	197
BcnI	CCSGG	1 cut(s)	18
BcoDI	GTCTC	1 cut(s)	26
BcuI	ACTAGT	1 cut(s)	167
BfaI	CTAG	3 cut(s)	105, 168, 209
BfmI	CTRYAG	1 cut(s)	345
BfuAI	ACCTGC	1 cut(s)	148
BglII	AGATCT	1 cut(s)	248
BisI	GCNGC	3 cut(s)	44, 127, 205
BlsI	GCNGC	3 cut(s)	45, 128, 206
Bme1390I	CCNGG	1 cut(s)	18
BmiI	GGNNCC	1 cut(s)	15
BmrFI	CCNGG	1 cut(s)	18
BpuMI	CCSGG	1 cut(s)	18
BsaI	GGTCTC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	5 cut(s)	42, 68, 105, 308, 426
Bse1I	ACTGG	1 cut(s)	116
BseGI	GGATG	1 cut(s)	440
BseLI	CCNNNNNNNGG	5 cut(s)	42, 68, 105, 308, 426
BseMII	CTCAG	1 cut(s)	77
BseNI	ACTGG	1 cut(s)	116
BseSI	GKGCMC	2 cut(s)	16, 76
BseXI	GCAGC	1 cut(s)	191
BseYI	CCCAGC	2 cut(s)	129, 419
Bsh1236I	CGCG	1 cut(s)	120
BshFI	GGCC	1 cut(s)	46
BshNI	GGYRCC	1 cut(s)	13
BsiSI	CCGG	1 cut(s)	18
BslI	CCNNNNNNNGG	5 cut(s)	42, 68, 105, 308, 426
BsmAI	GTCTC	1 cut(s)	26
BsnI	GGCC	1 cut(s)	46
Bso31I	GGTCTC	1 cut(s)	26
Bsp1286I	GDGCHC	2 cut(s)	16, 76
Bsp143I	GATC	4 cut(s)	66, 240, 248, 333
BspACI	CCGC	2 cut(s)	43, 126
BspANI	GGCC	1 cut(s)	46
BspCNI	CTCAG	1 cut(s)	76
BspFNI	CGCG	1 cut(s)	120
BspLI	GGNNCC	1 cut(s)	15
BspMI	ACCTGC	1 cut(s)	148
BspT107I	GGYRCC	1 cut(s)	13
BspTNI	GGTCTC	1 cut(s)	26
BsrI	ACTGG	1 cut(s)	116
BssMI	GATC	4 cut(s)	66, 240, 248, 333
Bst4CI	ACNGT	2 cut(s)	51, 349
Bst6I	CTCTTC	1 cut(s)	266
BstC8I	GCNNGC	3 cut(s)	181, 220, 363
BstDEI	CTNAG	1 cut(s)	63
BstF5I	GGATG	1 cut(s)	440
BstFNI	CGCG	1 cut(s)	120
BstKTI	GATC	4 cut(s)	69, 243, 251, 336
BstMAI	GTCTC	1 cut(s)	26
BstMBI	GATC	4 cut(s)	66, 240, 248, 333
BstMWI	GCNNNNNNNGC	2 cut(s)	126, 132
BstSCI	CCNGG	1 cut(s)	16
BstSFI	CTRYAG	1 cut(s)	345
BstSLI	GKGCMC	2 cut(s)	16, 76
BstUI	CGCG	1 cut(s)	120
BstV1I	GCAGC	1 cut(s)	191
BstX2I	RGATCY	1 cut(s)	248
BstYI	RGATCY	1 cut(s)	248
BsuRI	GGCC	1 cut(s)	46
BtsCI	GGATG	1 cut(s)	440
BtsIMutI	CAGTG	1 cut(s)	109
BveI	ACCTGC	1 cut(s)	148
Cac8I	GCNNGC	3 cut(s)	181, 220, 363
CaiI	CAGNNNCTG	1 cut(s)	204
CseI	GACGC	2 cut(s)	71, 109
CspCI	CAANNNNNGTGG	2 cut(s)	36, 71
CviAII	CATG	1 cut(s)	431
CviJI	RGCY	7 cut(s)	31, 46, 129, 194, 204, 212, 423
CviKI_1	RGCY	7 cut(s)	31, 46, 129, 194, 204, 212, 423
DdeI	CTNAG	1 cut(s)	63
DpnI	GATC	4 cut(s)	68, 242, 250, 335
DpnII	GATC	4 cut(s)	66, 240, 248, 333
EaeI	YGGCCR	1 cut(s)	44
Eam1104I	CTCTTC	1 cut(s)	266
EarI	CTCTTC	1 cut(s)	266
Eco31I	GGTCTC	1 cut(s)	26
FaeI	CATG	1 cut(s)	434
FaiI	YATR	2 cut(s)	324, 432
FatI	CATG	1 cut(s)	430
FblI	GTMKAC	1 cut(s)	458
Fnu4HI	GCNGC	3 cut(s)	44, 127, 205
FokI	GGATG	1 cut(s)	447
Fsp4HI	GCNGC	3 cut(s)	44, 127, 205
FspBI	CTAG	3 cut(s)	105, 168, 209
GluI	GCNGC	3 cut(s)	44, 127, 205
GsaI	CCCAGC	2 cut(s)	133, 423
HaeIII	GGCC	1 cut(s)	46
HapII	CCGG	1 cut(s)	18
HgaI	GACGC	2 cut(s)	71, 109
Hin1II	CATG	1 cut(s)	434
HincII	GTYRAC	1 cut(s)	459
HindII	GTYRAC	1 cut(s)	459
HinfI	GANTC	1 cut(s)	377
HpaII	CCGG	1 cut(s)	18
Hpy166II	GTNNAC	1 cut(s)	459
Hpy188I	TCNGA	1 cut(s)	66
Hpy188III	TCNNGA	5 cut(s)	25, 36, 199, 238, 381
Hpy8I	GTNNAC	1 cut(s)	459
Hpy99I	CGWCG	4 cut(s)	87, 377, 460, 463
HpyAV	CCTTC	2 cut(s)	105, 244
HpyCH4III	ACNGT	2 cut(s)	51, 349
HpyCH4IV	ACGT	2 cut(s)	455, 461
HpyF10VI	GCNNNNNNNGC	2 cut(s)	126, 132
HpyF3I	CTNAG	1 cut(s)	63
HpySE526I	ACGT	2 cut(s)	455, 461
Hsp92II	CATG	1 cut(s)	434
Kzo9I	GATC	4 cut(s)	66, 240, 248, 333
LmnI	GCTCC	1 cut(s)	201
LpnPI	CCDG	8 cut(s)	31, 97, 115, 153, 184, 236, 376, 433
Lsp1109I	GCAGC	1 cut(s)	191
MaeI	CTAG	3 cut(s)	105, 168, 209
MaeII	ACGT	2 cut(s)	455, 461
MalI	GATC	4 cut(s)	68, 242, 250, 335
MboI	GATC	4 cut(s)	66, 240, 248, 333
MboII	GAAGA	1 cut(s)	253
MflI	RGATCY	1 cut(s)	248
MhlI	GDGCHC	2 cut(s)	16, 76
MluCI	AATT	1 cut(s)	325
MluI	ACGCGT	1 cut(s)	118
MlyI	GAGTC	1 cut(s)	386
MmeI	TCCRAC	1 cut(s)	295
MnlI	CCTC	7 cut(s)	72, 98, 168, 241, 352, 364, 460
MspI	CCGG	1 cut(s)	18
MspR9I	CCNGG	1 cut(s)	18
MvnI	CGCG	1 cut(s)	120
MwoI	GCNNNNNNNGC	2 cut(s)	126, 132
NciI	CCSGG	1 cut(s)	18
NdeII	GATC	4 cut(s)	66, 240, 248, 333
NlaIII	CATG	1 cut(s)	434
NlaIV	GGNNCC	1 cut(s)	15
PflMI	CCANNNNNTGG	1 cut(s)	426
PkrI	GCNGC	3 cut(s)	45, 128, 206
PleI	GAGTC	1 cut(s)	385
PpsI	GAGTC	1 cut(s)	385
PspFI	CCCAGC	2 cut(s)	129, 419
PspN4I	GGNNCC	1 cut(s)	15
PstNI	CAGNNNCTG	1 cut(s)	204
PsuI	RGATCY	1 cut(s)	248
SalI	GTCGAC	1 cut(s)	457
SatI	GCNGC	3 cut(s)	44, 127, 205
Sau3AI	GATC	4 cut(s)	66, 240, 248, 333
SchI	GAGTC	1 cut(s)	386
ScrFI	CCNGG	1 cut(s)	18
SduI	GDGCHC	2 cut(s)	16, 76
SetI	ASST	6 cut(s)	33, 142, 160, 206, 458, 464
SfcI	CTRYAG	1 cut(s)	345
SgrDI	CGTCGACG	1 cut(s)	457
SpeI	ACTAGT	1 cut(s)	167
Sse9I	AATT	1 cut(s)	325
SsiI	CCGC	2 cut(s)	43, 126
SspMI	CTAG	3 cut(s)	105, 168, 209
StyD4I	CCNGG	1 cut(s)	16
TaaI	ACNGT	2 cut(s)	51, 349
TaiI	ACGT	2 cut(s)	458, 464
TaqI	TCGA	4 cut(s)	237, 375, 380, 458
TasI	AATT	1 cut(s)	325
TauI	GCSGC	2 cut(s)	46, 129
TscAI	CASTG	1 cut(s)	116
TseI	GCWGC	1 cut(s)	204
TspRI	CASTG	1 cut(s)	116
Van91I	CCANNNNNTGG	1 cut(s)	426
XmiI	GTMKAC	1 cut(s)	458
XspI	CTAG	3 cut(s)	105, 168, 209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.