Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0007560

Physical Location & Seq

Genomic Coordinates Reverse (-)

12518405 .. 12519630

Gene Structure 1226 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006991

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGGGACCCGATCCAATTTCGACCCGTCGGTTCAGGCTGAATCGGTTGCGGACTCAGTGCCGCCAGCCCAGATGATGTCGAAGTATGCGTCGAGCATGAGGTCTGAGGGGTTAGAAGGGAGTACTTACCGGAGCAATGAAATCTCGAACATGAAAATGGTGGTGAGGCATAAAGAGTTGAAGGAGATTGTGGAGGAGATTAAGGAGAATTTTTATAAGGCCGCGATGGCCGGAGACCAACCTCGACTCTATCTCCATCATGGACCCGCCTCCTCCGCCGCGGTTAAATTTGCTCAGCCCGTCGCCGAACTAGGGAGAGACCATTGGGCCATGGACTGCCCTGGAAAGATTGGGATCCGAAACGAGGAAGGAGTTGACGGCGAAAGTAGGCGGCAAGCGGCTGGGGTTGCGGACGACGACGTATTAGGAGAAGGTGAAGTTGATGGTGGAGTTGAGGATGGAGAAGGAGAGGAGCTGGATGGAGCTGATGAAGATTTTGGGGTCTTTGGGTCAAACCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0009987 GO:0010035 GO:0010167 GO:0015698 GO:0015706 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0070887 GO:0071229 GO:0071241 GO:0071249 GO:0071705 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF630 DUF632

Protein Analysis

174

Amino Acids

18.62

Weight (kDa)

4.5

Isoelectric Point (pI)

48.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007560)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000006991 RLG00000009793 RLG00000011857 RLG00000013125 RLG00000013975 RLG00000014809 RLG00000017041 RLG00000018430 RLG00000018921 RLG00000019889 RLG00000023155 RLG00000027020 RLG00000029579 RLG00000034055 RLG00000035664 RLG00000035941
rosa_multiflora	Rmu_sc0003379.1_g000011
rosa_roxburghii	Rroxscaffold_7G00200410
rosa_samantha	Rh1BG224300 Rh1BG224400 Rh1DG251900 Rh4DG089100 Rh7AG481800 Rh7BG089600 Rh7BG089700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	216
AccII	CGCG	2 cut(s)	224, 281
AclWI	GGATC	3 cut(s)	6, 349, 362
AcoI	YGGCCR	1 cut(s)	228
AcsI	RAATTY	2 cut(s)	208, 287
AfaI	GTAC	1 cut(s)	124
AfiI	CCNNNNNNNGG	2 cut(s)	312, 364
AgsI	TTSAA	1 cut(s)	181
AjnI	CCWGG	1 cut(s)	340
AluBI	AGCT	2 cut(s)	475, 485
AluI	AGCT	2 cut(s)	475, 485
Alw26I	GTCTC	2 cut(s)	228, 312
AlwI	GGATC	3 cut(s)	6, 349, 362
AoxI	GGCC	3 cut(s)	219, 228, 327
ApoI	RAATTY	2 cut(s)	208, 287
ArsI	GACNNNNNNTTYG	2 cut(s)	74, 106
AspS9I	GGNCC	3 cut(s)	6, 263, 327
AsuHPI	GGTGA	2 cut(s)	175, 446
AvaII	GGWCC	2 cut(s)	6, 263
BamHI	GGATCC	1 cut(s)	354
BccI	CCATC	5 cut(s)	220, 264, 437, 452, 473
BceAI	ACGGC	1 cut(s)	394
BciT130I	CCWGG	1 cut(s)	342
BcoDI	GTCTC	2 cut(s)	228, 312
BfaI	CTAG	1 cut(s)	311
BglI	GCCNNNNNGGC	1 cut(s)	227
BisI	GCNGC	5 cut(s)	62, 222, 279, 392, 399
BlpI	GCTNAGC	1 cut(s)	294
BlsI	GCNGC	5 cut(s)	63, 223, 280, 393, 400
BmcAI	AGTACT	1 cut(s)	124
Bme1390I	CCNGG	1 cut(s)	342
Bme18I	GGWCC	2 cut(s)	6, 263
BmgT120I	GGNCC	3 cut(s)	6, 263, 327
BmiI	GGNNCC	4 cut(s)	7, 8, 265, 356
BmrFI	CCNGG	1 cut(s)	342
Bpu1102I	GCTNAGC	1 cut(s)	294
BsaBI	GATNNNNATC	1 cut(s)	353
BsaI	GGTCTC	2 cut(s)	228, 312
BsaJI	CCNNGG	3 cut(s)	279, 330, 340
BsaWI	WCCGGW	1 cut(s)	129
BsaXI	ACNNNNNCTCC	2 cut(s)	237, 267
Bsc4I	CCNNNNNNNGG	2 cut(s)	312, 364
Bse3DI	GCAATG	1 cut(s)	142
Bse8I	GATNNNNATC	1 cut(s)	353
BseBI	CCWGG	1 cut(s)	342
BseDI	CCNNGG	3 cut(s)	279, 330, 340
BseGI	GGATG	2 cut(s)	463, 484
BseJI	GATNNNNATC	1 cut(s)	353
BseLI	CCNNNNNNNGG	2 cut(s)	312, 364
BseMI	GCAATG	1 cut(s)	142
BseMII	CTCAG	3 cut(s)	69, 96, 308
BseRI	GAGGAG	3 cut(s)	209, 262, 485
BseYI	CCCAGC	1 cut(s)	401
Bsh1236I	CGCG	2 cut(s)	224, 281
BshFI	GGCC	3 cut(s)	221, 230, 329
BsiSI	CCGG	2 cut(s)	130, 231
BslFI	GGGAC	1 cut(s)	19
BslI	CCNNNNNNNGG	2 cut(s)	312, 364
BsmAI	GTCTC	2 cut(s)	228, 312
BsmFI	GGGAC	1 cut(s)	19
BsnI	GGCC	3 cut(s)	221, 230, 329
Bso31I	GGTCTC	2 cut(s)	228, 312
Bsp143I	GATC	2 cut(s)	11, 354
Bsp1720I	GCTNAGC	1 cut(s)	294
Bsp19I	CCATGG	1 cut(s)	330
BspANI	GGCC	3 cut(s)	221, 230, 329
BspCNI	CTCAG	3 cut(s)	68, 97, 307
BspFNI	CGCG	2 cut(s)	224, 281
BspLI	GGNNCC	4 cut(s)	7, 8, 265, 356
BspPI	GGATC	3 cut(s)	6, 349, 362
BspTNI	GGTCTC	2 cut(s)	228, 312
BsrDI	GCAATG	1 cut(s)	142
BssECI	CCNNGG	3 cut(s)	279, 330, 340
BssMI	GATC	2 cut(s)	11, 354
BssT1I	CCWWGG	1 cut(s)	330
Bst2UI	CCWGG	1 cut(s)	342
BstC8I	GCNNGC	2 cut(s)	66, 396
BstDEI	CTNAG	3 cut(s)	55, 105, 294
BstDSI	CCRYGG	2 cut(s)	279, 330
BstF5I	GGATG	2 cut(s)	463, 484
BstFNI	CGCG	2 cut(s)	224, 281
BstKTI	GATC	2 cut(s)	14, 357
BstMAI	GTCTC	2 cut(s)	228, 312
BstMBI	GATC	2 cut(s)	11, 354
BstMWI	GCNNNNNNNGC	3 cut(s)	227, 275, 407
BstNI	CCWGG	1 cut(s)	342
BstSCI	CCNGG	1 cut(s)	340
BstUI	CGCG	2 cut(s)	224, 281
BstX2I	RGATCY	1 cut(s)	354
BstYI	RGATCY	1 cut(s)	354
BsuRI	GGCC	3 cut(s)	221, 230, 329
BtgI	CCRYGG	2 cut(s)	279, 330
BtgZI	GCGATG	1 cut(s)	239
BtsCI	GGATG	2 cut(s)	463, 484
BtsIMutI	CAGTG	1 cut(s)	63
Cac8I	GCNNGC	2 cut(s)	66, 396
Cfr13I	GGNCC	3 cut(s)	6, 263, 327
Cfr42I	CCGCGG	1 cut(s)	282
CseI	GACGC	1 cut(s)	78
Csp6I	GTAC	1 cut(s)	123
CviAII	CATG	4 cut(s)	97, 151, 260, 331
CviJI	RGCY	9 cut(s)	38, 68, 221, 230, 298, 329, 401, 475, 485
CviKI_1	RGCY	9 cut(s)	38, 68, 221, 230, 298, 329, 401, 475, 485
CviQI	GTAC	1 cut(s)	123
DdeI	CTNAG	3 cut(s)	55, 105, 294
DpnI	GATC	2 cut(s)	13, 356
DpnII	GATC	2 cut(s)	11, 354
EaeI	YGGCCR	1 cut(s)	228
EciI	GGCGGA	1 cut(s)	265
Eco130I	CCWWGG	1 cut(s)	330
Eco31I	GGTCTC	2 cut(s)	228, 312
Eco47I	GGWCC	2 cut(s)	6, 263
EcoO109I	RGGNCCY	1 cut(s)	6
EcoRII	CCWGG	1 cut(s)	340
EcoT14I	CCWWGG	1 cut(s)	330
ErhI	CCWWGG	1 cut(s)	330
FaeI	CATG	4 cut(s)	100, 154, 263, 334
FaiI	YATR	8 cut(s)	87, 98, 152, 171, 216, 261, 332, 520
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	4 cut(s)	96, 150, 259, 330
FauI	CCCGC	1 cut(s)	274
Fnu4HI	GCNGC	5 cut(s)	62, 222, 279, 392, 399
FokI	GGATG	2 cut(s)	470, 491
Fsp4HI	GCNGC	5 cut(s)	62, 222, 279, 392, 399
FspBI	CTAG	1 cut(s)	311
GluI	GCNGC	5 cut(s)	62, 222, 279, 392, 399
GsaI	CCCAGC	1 cut(s)	405
HaeIII	GGCC	3 cut(s)	221, 230, 329
HapII	CCGG	2 cut(s)	130, 231
HgaI	GACGC	1 cut(s)	78
Hin1II	CATG	4 cut(s)	100, 154, 263, 334
HincII	GTYRAC	1 cut(s)	376
HindII	GTYRAC	1 cut(s)	376
HinfI	GANTC	3 cut(s)	41, 53, 246
HpaII	CCGG	2 cut(s)	130, 231
HphI	GGTGA	2 cut(s)	175, 446
Hpy166II	GTNNAC	1 cut(s)	376
Hpy188I	TCNGA	2 cut(s)	106, 359
Hpy188III	TCNNGA	1 cut(s)	145
Hpy8I	GTNNAC	1 cut(s)	376
Hpy99I	CGWCG	5 cut(s)	31, 94, 305, 419, 422
HpyAV	CCTTC	5 cut(s)	110, 175, 362, 425, 458
HpyCH4IV	ACGT	1 cut(s)	420
HpyF10VI	GCNNNNNNNGC	3 cut(s)	227, 275, 407
HpyF3I	CTNAG	3 cut(s)	55, 105, 294
HpySE526I	ACGT	1 cut(s)	420
Hsp92II	CATG	4 cut(s)	100, 154, 263, 334
KflI	GGGWCCC	1 cut(s)	6
KspI	CCGCGG	1 cut(s)	282
Kzo9I	GATC	2 cut(s)	11, 354
LmnI	GCTCC	3 cut(s)	132, 472, 482
LpnPI	CCDG	9 cut(s)	20, 78, 83, 143, 244, 327, 354, 387, 461
MaeI	CTAG	1 cut(s)	311
MaeII	ACGT	1 cut(s)	420
MalI	GATC	2 cut(s)	13, 356
MboI	GATC	2 cut(s)	11, 354
MboII	GAAGA	1 cut(s)	503
MflI	RGATCY	1 cut(s)	354
MluCI	AATT	3 cut(s)	16, 208, 287
MlyI	GAGTC	2 cut(s)	47, 240
MseI	TTAA	2 cut(s)	201, 285
MslI	CAYNNNNRTG	1 cut(s)	155
MspA1I	CMGCKG	1 cut(s)	281
MspI	CCGG	2 cut(s)	130, 231
MspR9I	CCNGG	1 cut(s)	342
MvaI	CCWGG	1 cut(s)	342
MvnI	CGCG	2 cut(s)	224, 281
MwoI	GCNNNNNNNGC	3 cut(s)	227, 275, 407
NcoI	CCATGG	1 cut(s)	330
NdeII	GATC	2 cut(s)	11, 354
NlaIII	CATG	4 cut(s)	100, 154, 263, 334
NlaIV	GGNNCC	4 cut(s)	7, 8, 265, 356
PcsI	WCGNNNNNNNCGW	1 cut(s)	86
PfeI	GAWTC	1 cut(s)	41
PkrI	GCNGC	5 cut(s)	63, 223, 280, 393, 400
PleI	GAGTC	2 cut(s)	47, 240
PpsI	GAGTC	2 cut(s)	47, 240
PpuMI	RGGWCCY	1 cut(s)	6
PsiI	TTATAA	1 cut(s)	216
Psp5II	RGGWCCY	1 cut(s)	6
Psp6I	CCWGG	1 cut(s)	340
PspFI	CCCAGC	1 cut(s)	401
PspGI	CCWGG	1 cut(s)	340
PspN4I	GGNNCC	4 cut(s)	7, 8, 265, 356
PspPI	GGNCC	3 cut(s)	6, 263, 327
PspPPI	RGGWCCY	1 cut(s)	6
PsuI	RGATCY	1 cut(s)	354
RsaI	GTAC	1 cut(s)	124
RsaNI	GTAC	1 cut(s)	123
RseI	CAYNNNNRTG	1 cut(s)	155
SacII	CCGCGG	1 cut(s)	282
SaqAI	TTAA	2 cut(s)	201, 285
SatI	GCNGC	5 cut(s)	62, 222, 279, 392, 399
Sau3AI	GATC	2 cut(s)	11, 354
Sau96I	GGNCC	3 cut(s)	6, 263, 327
ScaI	AGTACT	1 cut(s)	124
SchI	GAGTC	2 cut(s)	47, 240
ScrFI	CCNGG	1 cut(s)	342
SetI	ASST	6 cut(s)	104, 244, 423, 436, 477, 487
SfiI	GGCCNNNNNGGCC	1 cut(s)	227
Sfr303I	CCGCGG	1 cut(s)	282
SgrBI	CCGCGG	1 cut(s)	282
SinI	GGWCC	2 cut(s)	6, 263
SmiMI	CAYNNNNRTG	1 cut(s)	155
Sse9I	AATT	3 cut(s)	16, 208, 287
SspMI	CTAG	1 cut(s)	311
StyD4I	CCNGG	1 cut(s)	340
StyI	CCWWGG	1 cut(s)	330
TaiI	ACGT	1 cut(s)	423
TaqI	TCGA	5 cut(s)	21, 80, 92, 146, 244
TasI	AATT	3 cut(s)	16, 208, 287
TatI	WGTACW	1 cut(s)	122
TauI	GCSGC	5 cut(s)	64, 224, 281, 394, 401
TfiI	GAWTC	1 cut(s)	41
Tru1I	TTAA	2 cut(s)	201, 285
Tru9I	TTAA	2 cut(s)	201, 285
TscAI	CASTG	1 cut(s)	63
TspDTI	ATGAA	3 cut(s)	153, 167, 504
TspRI	CASTG	1 cut(s)	63
VpaK11BI	GGWCC	2 cut(s)	6, 263
XapI	RAATTY	2 cut(s)	208, 287
XspI	CTAG	1 cut(s)	311
ZrmI	AGTACT	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.