RLG00000029579

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0007560
Physical Location & Seq
Reverse (-)
40695870 .. 40696293
424 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029579

Sequence Viewer

Length: 336 bp
ATGGGAGGTCGGAGTCGGGTTCTAGATTGCAGCTCTGAGGCTATGGAGGTCGCGAGCACAGGTCCCATGGTTTGGGTTGGTTTCGGTTTCCTCCAGGTTTATTTCAAACTCTGGTGGCGGCGTGAAGAGGGAAGTCGACGGCTTGCGGTGGATCCGCATCCAAGGGGATCTGGGTTCGTGCTTCGGGGTGGCGGTAGCGTTTGCAGCTGTGCAGCGTCTGCCCTAGCAAAGGAGGTGGTGTCTGGGCCTGCGATAGGCTTTTCCCTTTTTGGACCTTGGCTTGGCTTTTCTTTTTGGGCTCAACAATTGTTTTTATGTTTTTTACTTGTTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.11

Weight (kDa)

8.91

Isoelectric Point (pI)

39.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 72
AccI GTMKAC 1 cut(s) 136
AccII CGCG 1 cut(s) 53
AciI CCGC 4 cut(s) 118, 146, 155, 192
AclWI GGATC 3 cut(s) 146, 159, 175
AfiI CCNNNNNNNGG 4 cut(s) 72, 229, 254, 281
AgsI TTSAA 2 cut(s) 106, 332
AjnI CCWGG 1 cut(s) 93
AluBI AGCT 2 cut(s) 33, 207
AluI AGCT 2 cut(s) 33, 207
Alw21I GWGCWC 1 cut(s) 59
AlwI GGATC 3 cut(s) 146, 159, 175
AlwNI CAGNNNCTG 1 cut(s) 218
AoxI GGCC 1 cut(s) 245
ApeKI GCWGC 3 cut(s) 30, 204, 212
AspS9I GGNCC 3 cut(s) 62, 245, 272
AvaII GGWCC 2 cut(s) 62, 272
BamHI GGATCC 1 cut(s) 151
BanII GRGCYC 1 cut(s) 301
Bbv12I GWGCWC 1 cut(s) 59
BbvI GCAGC 3 cut(s) 42, 216, 224
BceAI ACGGC 1 cut(s) 155
BciT130I CCWGG 1 cut(s) 95
BfaI CTAG 2 cut(s) 23, 224
BisI GCNGC 4 cut(s) 31, 119, 205, 213
BlsI GCNGC 4 cut(s) 32, 120, 206, 214
Bme1390I CCNGG 1 cut(s) 95
Bme18I GGWCC 2 cut(s) 62, 272
BmgT120I GGNCC 3 cut(s) 62, 245, 272
BmiI GGNNCC 2 cut(s) 64, 153
BmrFI CCNGG 1 cut(s) 95
BmsI GCATC 1 cut(s) 166
BpmI CTGGAG 1 cut(s) 77
BsaBI GATNNNNATC 1 cut(s) 156
BsaJI CCNNGG 3 cut(s) 66, 161, 275
BsaXI ACNNNNNCTCC 2 cut(s) 224, 254
Bsc4I CCNNNNNNNGG 4 cut(s) 72, 229, 254, 281
Bse8I GATNNNNATC 1 cut(s) 156
BseBI CCWGG 1 cut(s) 95
BseDI CCNNGG 3 cut(s) 66, 161, 275
BseGI GGATG 1 cut(s) 157
BseJI GATNNNNATC 1 cut(s) 156
BseLI CCNNNNNNNGG 4 cut(s) 72, 229, 254, 281
BseMII CTCAG 1 cut(s) 27
BseXI GCAGC 3 cut(s) 42, 216, 224
BsgI GTGCAG 1 cut(s) 231
Bsh1236I CGCG 1 cut(s) 53
BshFI GGCC 1 cut(s) 247
BsiHKAI GWGCWC 1 cut(s) 59
BslFI GGGAC 1 cut(s) 48
BslI CCNNNNNNNGG 4 cut(s) 72, 229, 254, 281
BsmFI GGGAC 1 cut(s) 48
BsnI GGCC 1 cut(s) 247
Bsp1286I GDGCHC 2 cut(s) 59, 301
Bsp143I GATC 2 cut(s) 151, 167
Bsp19I CCATGG 1 cut(s) 66
Bsp68I TCGCGA 1 cut(s) 53
BspACI CCGC 4 cut(s) 118, 146, 155, 192
BspANI GGCC 1 cut(s) 247
BspCNI CTCAG 1 cut(s) 28
BspFNI CGCG 1 cut(s) 53
BspLI GGNNCC 2 cut(s) 64, 153
BspPI GGATC 3 cut(s) 146, 159, 175
BssECI CCNNGG 3 cut(s) 66, 161, 275
BssMI GATC 2 cut(s) 151, 167
BssT1I CCWWGG 3 cut(s) 66, 161, 275
Bst2UI CCWGG 1 cut(s) 95
Bst6I CTCTTC 1 cut(s) 120
BstAPI GCANNNNNTGC 1 cut(s) 218
BstC8I GCNNGC 3 cut(s) 55, 144, 249
BstDEI CTNAG 1 cut(s) 36
BstDSI CCRYGG 1 cut(s) 66
BstENI CCTNNNNNAGG 2 cut(s) 227, 252
BstF5I GGATG 1 cut(s) 157
BstFNI CGCG 1 cut(s) 53
BstKTI GATC 2 cut(s) 154, 170
BstMBI GATC 2 cut(s) 151, 167
BstMWI GCNNNNNNNGC 2 cut(s) 204, 218
BstNI CCWGG 1 cut(s) 95
BstSCI CCNGG 1 cut(s) 93
BstUI CGCG 1 cut(s) 53
BstV1I GCAGC 3 cut(s) 42, 216, 224
BstX2I RGATCY 2 cut(s) 151, 167
BstYI RGATCY 2 cut(s) 151, 167
BsuRI GGCC 1 cut(s) 247
BtgI CCRYGG 1 cut(s) 66
BtsCI GGATG 1 cut(s) 157
BtuMI TCGCGA 1 cut(s) 53
Cac8I GCNNGC 3 cut(s) 55, 144, 249
CaiI CAGNNNCTG 1 cut(s) 218
Cfr13I GGNCC 3 cut(s) 62, 245, 272
CseI GACGC 1 cut(s) 204
CspCI CAANNNNNGTGG 2 cut(s) 216, 251
CviAII CATG 1 cut(s) 67
CviJI RGCY 9 cut(s) 33, 41, 142, 207, 247, 258, 280, 285, 299
CviKI_1 RGCY 9 cut(s) 33, 41, 142, 207, 247, 258, 280, 285, 299
DdeI CTNAG 1 cut(s) 36
DpnI GATC 2 cut(s) 153, 169
DpnII GATC 2 cut(s) 151, 167
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
Eco130I CCWWGG 3 cut(s) 66, 161, 275
Eco24I GRGCYC 1 cut(s) 301
Eco47I GGWCC 2 cut(s) 62, 272
EcoNI CCTNNNNNAGG 2 cut(s) 227, 252
EcoO109I RGGNCCY 1 cut(s) 62
EcoRII CCWGG 1 cut(s) 93
EcoT14I CCWWGG 3 cut(s) 66, 161, 275
EcoT38I GRGCYC 1 cut(s) 301
ErhI CCWWGG 3 cut(s) 66, 161, 275
FaeI CATG 1 cut(s) 70
FaiI YATR 3 cut(s) 44, 68, 316
FaqI GGGAC 1 cut(s) 48
FatI CATG 1 cut(s) 66
FblI GTMKAC 1 cut(s) 136
Fnu4HI GCNGC 4 cut(s) 31, 119, 205, 213
FokI GGATG 1 cut(s) 144
FriOI GRGCYC 1 cut(s) 301
Fsp4HI GCNGC 4 cut(s) 31, 119, 205, 213
FspBI CTAG 2 cut(s) 23, 224
GluI GCNGC 4 cut(s) 31, 119, 205, 213
GsuI CTGGAG 1 cut(s) 77
HaeIII GGCC 1 cut(s) 247
HgaI GACGC 1 cut(s) 204
Hin1II CATG 1 cut(s) 70
HincII GTYRAC 1 cut(s) 137
HindII GTYRAC 1 cut(s) 137
HinfI GANTC 1 cut(s) 13
Hpy166II GTNNAC 1 cut(s) 137
Hpy188I TCNGA 2 cut(s) 12, 37
Hpy188III TCNNGA 2 cut(s) 23, 52
Hpy8I GTNNAC 1 cut(s) 137
Hpy99I CGWCG 1 cut(s) 141
HpyCH4V TGCA 3 cut(s) 30, 204, 212
HpyF10VI GCNNNNNNNGC 2 cut(s) 204, 218
HpyF3I CTNAG 1 cut(s) 36
Hsp92II CATG 1 cut(s) 70
Kzo9I GATC 2 cut(s) 151, 167
LpnPI CCDG 7 cut(s) 45, 80, 97, 107, 156, 228, 261
Lsp1109I GCAGC 3 cut(s) 42, 216, 224
LweI GCATC 1 cut(s) 166
MaeI CTAG 2 cut(s) 23, 224
MalI GATC 2 cut(s) 153, 169
MboI GATC 2 cut(s) 151, 167
MboII GAAGA 1 cut(s) 137
MfeI CAATTG 1 cut(s) 305
MflI RGATCY 2 cut(s) 151, 167
MhlI GDGCHC 2 cut(s) 59, 301
MluCI AATT 1 cut(s) 305
MlyI GAGTC 1 cut(s) 22
MnlI CCTC 5 cut(s) 31, 40, 101, 121, 226
MspA1I CMGCKG 1 cut(s) 207
MspR9I CCNGG 1 cut(s) 95
MunI CAATTG 1 cut(s) 305
MvaI CCWGG 1 cut(s) 95
MvnI CGCG 1 cut(s) 53
MwoI GCNNNNNNNGC 2 cut(s) 204, 218
NcoI CCATGG 1 cut(s) 66
NdeII GATC 2 cut(s) 151, 167
NlaIII CATG 1 cut(s) 70
NlaIV GGNNCC 2 cut(s) 64, 153
NruI TCGCGA 1 cut(s) 53
PflMI CCANNNNNTGG 1 cut(s) 72
PkrI GCNGC 4 cut(s) 32, 120, 206, 214
PleI GAGTC 1 cut(s) 21
PpsI GAGTC 1 cut(s) 21
PpuMI RGGWCCY 1 cut(s) 62
Psp5II RGGWCCY 1 cut(s) 62
Psp6I CCWGG 1 cut(s) 93
PspGI CCWGG 1 cut(s) 93
PspN4I GGNNCC 2 cut(s) 64, 153
PspPI GGNCC 3 cut(s) 62, 245, 272
PspPPI RGGWCCY 1 cut(s) 62
PstNI CAGNNNCTG 1 cut(s) 218
PsuI RGATCY 2 cut(s) 151, 167
PvuII CAGCTG 1 cut(s) 207
RruI TCGCGA 1 cut(s) 53
SalI GTCGAC 1 cut(s) 135
SatI GCNGC 4 cut(s) 31, 119, 205, 213
Sau3AI GATC 2 cut(s) 151, 167
Sau96I GGNCC 3 cut(s) 62, 245, 272
SchI GAGTC 1 cut(s) 22
ScrFI CCNGG 1 cut(s) 95
SduI GDGCHC 2 cut(s) 59, 301
SetI ASST 8 cut(s) 10, 35, 51, 64, 99, 209, 237, 277
SfaNI GCATC 1 cut(s) 166
SinI GGWCC 2 cut(s) 62, 272
Sse9I AATT 1 cut(s) 305
SsiI CCGC 4 cut(s) 118, 146, 155, 192
SspMI CTAG 2 cut(s) 23, 224
StyD4I CCNGG 1 cut(s) 93
StyI CCWWGG 3 cut(s) 66, 161, 275
TaqI TCGA 1 cut(s) 136
TasI AATT 1 cut(s) 305
TauI GCSGC 1 cut(s) 121
TseI GCWGC 3 cut(s) 30, 204, 212
Van91I CCANNNNNTGG 1 cut(s) 72
VpaK11BI GGWCC 2 cut(s) 62, 272
XagI CCTNNNNNAGG 2 cut(s) 227, 252
XbaI TCTAGA 1 cut(s) 22
XmiI GTMKAC 1 cut(s) 136
XspI CTAG 2 cut(s) 23, 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.