Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0007560

Physical Location & Seq

Genomic Coordinates Reverse (-)

19032710 .. 19033819

Gene Structure 1110 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023155

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGTTGCTGGACGGGAAACGATTACCCATTGATCTGGTGGTGATTTTGCTTGAGGTTTTAACAGATTTTGATCAGCGTGGTTTTGTCAAATCGGGCTCGGAGGCAAGGCATCCATGGACACCGGTTTTAGGACACAAGTTCGGTGATGGGGGCAGTGTAGCACTGGTGCCTAGGTTCGTGGTGGCGATGGTGCAACCGATCTCGGTGCACTTGCGGTGTGTGTATTCTCGTCCGGCAACGCCTACATCGGCAGTGGTGGCCTTCGGCGCTGATAGTGTGTGCCTTTGCTGCCGAACGGGTGATTGGTTGAGTTCTCTGGAATCGTCGGGCTTGGAGATTTCGGTGGGAGGCCGGCATCGGGTTCTAGATCAAAGCTTTGAGGCTATGGAGATCACAGGCATCAGTTTCGGGGTTTGGGAGGGATTCAGTTTTCCGTTGAATTTATTCCAAATTTCAGGGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

155

Amino Acids

16.69

Weight (kDa)

5.74

Isoelectric Point (pI)

36.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007560)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000006991 RLG00000009793 RLG00000011857 RLG00000013125 RLG00000013975 RLG00000014809 RLG00000017041 RLG00000018430 RLG00000018921 RLG00000019889 RLG00000023155 RLG00000027020 RLG00000029579 RLG00000034055 RLG00000035664 RLG00000035941
rosa_multiflora	Rmu_sc0003379.1_g000011
rosa_roxburghii	Rroxscaffold_7G00200410
rosa_samantha	Rh1BG224300 Rh1BG224400 Rh1DG251900 Rh4DG089100 Rh7AG481800 Rh7BG089600 Rh7BG089700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	166
AciI	CCGC	1 cut(s)	214
AcsI	RAATTY	2 cut(s)	439, 450
AfiI	CCNNNNNNNGG	2 cut(s)	128, 358
AgeI	ACCGGT	1 cut(s)	121
AgsI	TTSAA	1 cut(s)	439
AjuI	GAANNNNNNNTTGG	2 cut(s)	286, 318
AluBI	AGCT	1 cut(s)	375
AluI	AGCT	1 cut(s)	375
Alw21I	GWGCWC	1 cut(s)	210
Alw44I	GTGCAC	1 cut(s)	206
AoxI	GGCC	2 cut(s)	258, 349
ApaLI	GTGCAC	1 cut(s)	206
ApeKI	GCWGC	1 cut(s)	288
ApoI	RAATTY	2 cut(s)	439, 450
AsiGI	ACCGGT	1 cut(s)	121
Asp700I	GAANNNNTTC	1 cut(s)	443
AspA2I	CCTAGG	1 cut(s)	170
AspLEI	GCGC	1 cut(s)	269
AsuHPI	GGTGA	3 cut(s)	52, 155, 311
AvrII	CCTAGG	1 cut(s)	170
BaeGI	GKGCMC	1 cut(s)	210
BanI	GGYRCC	1 cut(s)	166
BanII	GRGCYC	1 cut(s)	98
Bbv12I	GWGCWC	1 cut(s)	210
BbvI	GCAGC	1 cut(s)	275
BccI	CCATC	2 cut(s)	140, 181
BcgI	CGANNNNNNTGC	4 cut(s)	187, 221, 388, 422
BclI	TGATCA	1 cut(s)	70
BfaI	CTAG	2 cut(s)	171, 365
BfoI	RGCGCY	1 cut(s)	270
BisI	GCNGC	1 cut(s)	289
BlnI	CCTAGG	1 cut(s)	170
BlsI	GCNGC	1 cut(s)	290
BmiI	GGNNCC	1 cut(s)	168
BmsI	GCATC	3 cut(s)	118, 364, 408
BpuEI	CTTGAG	1 cut(s)	71
BsaBI	GATNNNNATC	1 cut(s)	69
BsaJI	CCNNGG	2 cut(s)	113, 170
BsaWI	WCCGGW	1 cut(s)	121
Bsc4I	CCNNNNNNNGG	2 cut(s)	128, 358
Bse118I	RCCGGY	2 cut(s)	121, 351
Bse1I	ACTGG	1 cut(s)	168
Bse8I	GATNNNNATC	1 cut(s)	69
BseDI	CCNNGG	2 cut(s)	113, 170
BseGI	GGATG	1 cut(s)	109
BseJI	GATNNNNATC	1 cut(s)	69
BseLI	CCNNNNNNNGG	2 cut(s)	128, 358
BseNI	ACTGG	1 cut(s)	168
BseSI	GKGCMC	1 cut(s)	210
BseXI	GCAGC	1 cut(s)	275
BshFI	GGCC	2 cut(s)	260, 351
BshNI	GGYRCC	1 cut(s)	166
BshTI	ACCGGT	1 cut(s)	121
BsiHKAI	GWGCWC	1 cut(s)	210
BsiSI	CCGG	3 cut(s)	122, 233, 352
BslI	CCNNNNNNNGG	2 cut(s)	128, 358
BsnI	GGCC	2 cut(s)	260, 351
Bsp1286I	GDGCHC	2 cut(s)	98, 210
Bsp143I	GATC	5 cut(s)	31, 70, 198, 367, 390
Bsp19I	CCATGG	1 cut(s)	113
BspACI	CCGC	1 cut(s)	214
BspANI	GGCC	2 cut(s)	260, 351
BspLI	GGNNCC	1 cut(s)	168
BspT107I	GGYRCC	1 cut(s)	166
BsrFI	RCCGGY	2 cut(s)	121, 351
BsrI	ACTGG	1 cut(s)	168
BssAI	RCCGGY	2 cut(s)	121, 351
BssECI	CCNNGG	2 cut(s)	113, 170
BssMI	GATC	5 cut(s)	31, 70, 198, 367, 390
BssT1I	CCWWGG	2 cut(s)	113, 170
BstC8I	GCNNGC	1 cut(s)	353
BstDSI	CCRYGG	1 cut(s)	113
BstF5I	GGATG	1 cut(s)	109
BstH2I	RGCGCY	1 cut(s)	270
BstHHI	GCGC	1 cut(s)	269
BstKTI	GATC	5 cut(s)	34, 73, 201, 370, 393
BstMBI	GATC	5 cut(s)	31, 70, 198, 367, 390
BstMWI	GCNNNNNNNGC	3 cut(s)	257, 266, 288
BstSLI	GKGCMC	1 cut(s)	210
BstV1I	GCAGC	1 cut(s)	275
BstXI	CCANNNNNNTGG	1 cut(s)	34
BsuRI	GGCC	2 cut(s)	260, 351
BtgI	CCRYGG	1 cut(s)	113
BtgZI	GCGATG	1 cut(s)	200
BtsCI	GGATG	1 cut(s)	109
BtsI	GCAGTG	2 cut(s)	160, 258
BtsIMutI	CAGTG	3 cut(s)	160, 161, 258
Cac8I	GCNNGC	1 cut(s)	353
CfoI	GCGC	1 cut(s)	269
Cfr10I	RCCGGY	2 cut(s)	121, 351
CspAI	ACCGGT	1 cut(s)	121
CviAII	CATG	1 cut(s)	114
CviJI	RGCY	6 cut(s)	96, 260, 330, 351, 375, 383
CviKI_1	RGCY	6 cut(s)	96, 260, 330, 351, 375, 383
DpnI	GATC	5 cut(s)	33, 72, 200, 369, 392
DpnII	GATC	5 cut(s)	31, 70, 198, 367, 390
Eco130I	CCWWGG	2 cut(s)	113, 170
Eco24I	GRGCYC	1 cut(s)	98
EcoT14I	CCWWGG	2 cut(s)	113, 170
EcoT38I	GRGCYC	1 cut(s)	98
ErhI	CCWWGG	2 cut(s)	113, 170
FaeI	CATG	1 cut(s)	117
FaiI	YATR	2 cut(s)	115, 386
FatI	CATG	1 cut(s)	113
FbaI	TGATCA	1 cut(s)	70
Fnu4HI	GCNGC	1 cut(s)	289
FokI	GGATG	1 cut(s)	96
FriOI	GRGCYC	1 cut(s)	98
Fsp4HI	GCNGC	1 cut(s)	289
FspBI	CTAG	2 cut(s)	171, 365
GlaI	GCGC	1 cut(s)	268
GluI	GCNGC	1 cut(s)	289
HaeII	RGCGCY	1 cut(s)	270
HaeIII	GGCC	2 cut(s)	260, 351
HapII	CCGG	3 cut(s)	122, 233, 352
HhaI	GCGC	1 cut(s)	269
Hin1II	CATG	1 cut(s)	117
Hin6I	GCGC	1 cut(s)	267
HinP1I	GCGC	1 cut(s)	267
HindIII	AAGCTT	1 cut(s)	373
HinfI	GANTC	2 cut(s)	320, 423
HpaII	CCGG	3 cut(s)	122, 233, 352
HphI	GGTGA	3 cut(s)	52, 155, 311
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	1 cut(s)	100
Hpy188III	TCNNGA	2 cut(s)	317, 365
Hpy8I	GTNNAC	1 cut(s)	208
Hpy99I	CGWCG	1 cut(s)	328
HpyAV	CCTTC	1 cut(s)	271
HpyCH4V	TGCA	2 cut(s)	193, 208
HpyF10VI	GCNNNNNNNGC	3 cut(s)	257, 266, 288
Hsp92II	CATG	1 cut(s)	117
HspAI	GCGC	1 cut(s)	267
KroI	GCCGGC	1 cut(s)	351
KroNI	GCCGGC	1 cut(s)	353
Ksp22I	TGATCA	1 cut(s)	70
Kzo9I	GATC	5 cut(s)	31, 70, 198, 367, 390
LpnPI	CCDG	8 cut(s)	20, 135, 149, 246, 302, 365, 381, 441
Lsp1109I	GCAGC	1 cut(s)	275
LweI	GCATC	3 cut(s)	118, 364, 408
MaeI	CTAG	2 cut(s)	171, 365
MalI	GATC	5 cut(s)	33, 72, 200, 369, 392
MboI	GATC	5 cut(s)	31, 70, 198, 367, 390
MhlI	GDGCHC	2 cut(s)	98, 210
MluCI	AATT	2 cut(s)	439, 450
MnlI	CCTC	5 cut(s)	46, 94, 341, 373, 412
MroNI	GCCGGC	1 cut(s)	351
MroXI	GAANNNNTTC	1 cut(s)	443
MseI	TTAA	1 cut(s)	59
MspI	CCGG	3 cut(s)	122, 233, 352
MwoI	GCNNNNNNNGC	3 cut(s)	257, 266, 288
NaeI	GCCGGC	1 cut(s)	353
NcoI	CCATGG	1 cut(s)	113
NdeII	GATC	5 cut(s)	31, 70, 198, 367, 390
NgoMIV	GCCGGC	1 cut(s)	351
NlaIII	CATG	1 cut(s)	117
NlaIV	GGNNCC	1 cut(s)	168
PdiI	GCCGGC	1 cut(s)	353
PdmI	GAANNNNTTC	1 cut(s)	443
PfeI	GAWTC	2 cut(s)	320, 423
PinAI	ACCGGT	1 cut(s)	121
PkrI	GCNGC	1 cut(s)	290
PspN4I	GGNNCC	1 cut(s)	168
SaqAI	TTAA	1 cut(s)	59
SatI	GCNGC	1 cut(s)	289
Sau3AI	GATC	5 cut(s)	31, 70, 198, 367, 390
SduI	GDGCHC	2 cut(s)	98, 210
SetI	ASST	3 cut(s)	57, 176, 377
SfaNI	GCATC	3 cut(s)	118, 364, 408
SmlI	CTYRAG	1 cut(s)	50
SmoI	CTYRAG	1 cut(s)	50
Sse9I	AATT	2 cut(s)	439, 450
SsiI	CCGC	1 cut(s)	214
SspMI	CTAG	2 cut(s)	171, 365
StyI	CCWWGG	2 cut(s)	113, 170
TasI	AATT	2 cut(s)	439, 450
TfiI	GAWTC	2 cut(s)	320, 423
Tru1I	TTAA	1 cut(s)	59
Tru9I	TTAA	1 cut(s)	59
TscAI	CASTG	3 cut(s)	160, 168, 258
TseI	GCWGC	1 cut(s)	288
TspGWI	ACGGA	1 cut(s)	423
TspRI	CASTG	3 cut(s)	160, 168, 258
VneI	GTGCAC	1 cut(s)	206
XapI	RAATTY	2 cut(s)	439, 450
XbaI	TCTAGA	1 cut(s)	364
XcmI	CCANNNNNNNNNTGG	1 cut(s)	34
XmaJI	CCTAGG	1 cut(s)	170
XmnI	GAANNNNTTC	1 cut(s)	443
XspI	CTAG	2 cut(s)	171, 365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.