Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0007560

Physical Location & Seq

Genomic Coordinates Forward (+)

73755968 .. 73756565

Gene Structure 598 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035941

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGGCTGCACGGTGTCTAAATTGGACAATGAGGACACTGTGCGGCAGTGCAAGGACCGACGCCGTTTAATGAAAGATGCCGTCTTCGCCCACCACCACCTCACCGCTCCCTCTGCCTCACCGGCTCCGCCCTCGTCTCCCTCTCCATCTCCGACACTAGCCCCTCATCCACTCCCGAAGCCAAAACTTGAACTTCACCTACTGCGGATTTTTGACGGCCTTTCAGGCGAACTCGACTCGTTGGACTCCGAATTCTTCAACCAAAGAGAGCAGGAGTCCAAGCAATCCCACCACATCGACTATTCCGACGACAACACCGAGCCGGAAACCAAAACTGAGGCATCGGAGTACAATTACTTCCACAACATGCCCAAATCCCAACCCACCGCCCACCAAAACCACTTGTATTCTCAGTCGGAGAAGTACGCCCAGTCCGAAACTGAGAGATCAGAGTATGATTTCCTCGTCCCTAACTGTAACCCCAAAGCTCTGACCAAGACTCAGTCGGAGAAGTACGCTCAGTCGGAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0009987 GO:0010035 GO:0010167 GO:0015698 GO:0015706 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0070887 GO:0071229 GO:0071241 GO:0071249 GO:0071705 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF630 DUF632

Protein Analysis

178

Amino Acids

20.17

Weight (kDa)

5.78

Isoelectric Point (pI)

86.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF630	PF04783	1 - 36	6e-11	Protein of unknown function (DUF630)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0007560)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000006991 RLG00000009793 RLG00000011857 RLG00000013125 RLG00000013975 RLG00000014809 RLG00000017041 RLG00000018430 RLG00000018921 RLG00000019889 RLG00000023155 RLG00000027020 RLG00000029579 RLG00000034055 RLG00000035664 RLG00000035941
rosa_multiflora	Rmu_sc0003379.1_g000011
rosa_roxburghii	Rroxscaffold_7G00200410
rosa_samantha	Rh1BG224300 Rh1BG224400 Rh1DG251900 Rh4DG089100 Rh7AG481800 Rh7BG089600 Rh7BG089700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	107
AciI	CCGC	5 cut(s)	43, 105, 128, 205, 387
AcsI	RAATTY	1 cut(s)	251
AcyI	GRCGYC	1 cut(s)	61
AfaI	GTAC	3 cut(s)	350, 425, 515
AgsI	TTSAA	2 cut(s)	191, 259
AluBI	AGCT	1 cut(s)	488
AluI	AGCT	1 cut(s)	488
Alw26I	GTCTC	1 cut(s)	141
AoxI	GGCC	1 cut(s)	217
ApeKI	GCWGC	1 cut(s)	6
ApoI	RAATTY	1 cut(s)	251
AspS9I	GGNCC	1 cut(s)	55
AsuHPI	GGTGA	3 cut(s)	94, 111, 188
AvaII	GGWCC	1 cut(s)	55
BarI	GAAGNNNNNNTAC	2 cut(s)	341, 373
BbsI	GAAGAC	1 cut(s)	76
BccI	CCATC	1 cut(s)	154
BceAI	ACGGC	3 cut(s)	48, 65, 232
BcoDI	GTCTC	1 cut(s)	141
BfaI	CTAG	1 cut(s)	158
BglI	GCCNNNNNGGC	2 cut(s)	122, 225
BisI	GCNGC	2 cut(s)	7, 44
BlsI	GCNGC	2 cut(s)	8, 45
Bme18I	GGWCC	1 cut(s)	55
BmgT120I	GGNCC	1 cut(s)	55
BmiI	GGNNCC	1 cut(s)	126
BmrI	ACTGGG	1 cut(s)	424
BmsI	GCATC	2 cut(s)	67, 350
BmuI	ACTGGG	1 cut(s)	424
BpiI	GAAGAC	1 cut(s)	76
BsaHI	GRCGYC	1 cut(s)	61
Bse118I	RCCGGY	1 cut(s)	121
Bse1I	ACTGG	1 cut(s)	430
BseGI	GGATG	1 cut(s)	166
BseMII	CTCAG	5 cut(s)	327, 425, 432, 515, 533
BseNI	ACTGG	1 cut(s)	430
BshFI	GGCC	1 cut(s)	219
BsiSI	CCGG	2 cut(s)	122, 323
BslFI	GGGAC	1 cut(s)	452
BsmAI	GTCTC	1 cut(s)	141
BsmBI	CGTCTC	1 cut(s)	141
BsmFI	GGGAC	1 cut(s)	452
BsnI	GGCC	1 cut(s)	219
Bsp143I	GATC	1 cut(s)	446
BspACI	CCGC	5 cut(s)	43, 105, 128, 205, 387
BspANI	GGCC	1 cut(s)	219
BspCNI	CTCAG	5 cut(s)	328, 424, 433, 514, 532
BspLI	GGNNCC	1 cut(s)	126
BsrBI	CCGCTC	1 cut(s)	107
BsrFI	RCCGGY	1 cut(s)	121
BsrI	ACTGG	1 cut(s)	430
BssAI	RCCGGY	1 cut(s)	121
BssMI	GATC	1 cut(s)	446
BssNI	GRCGYC	1 cut(s)	61
Bst4CI	ACNGT	3 cut(s)	13, 40, 476
BstACI	GRCGYC	1 cut(s)	61
BstDEI	CTNAG	5 cut(s)	336, 411, 441, 501, 519
BstF5I	GGATG	1 cut(s)	166
BstKTI	GATC	1 cut(s)	449
BstMAI	GTCTC	1 cut(s)	141
BstMBI	GATC	1 cut(s)	446
BstMWI	GCNNNNNNNGC	4 cut(s)	86, 113, 122, 225
BstNSI	RCATGY	1 cut(s)	370
BstV2I	GAAGAC	1 cut(s)	76
BsuRI	GGCC	1 cut(s)	219
BtsCI	GGATG	1 cut(s)	166
BtsI	GCAGTG	1 cut(s)	53
BtsIMutI	CAGTG	2 cut(s)	36, 53
Cfr10I	RCCGGY	1 cut(s)	121
Cfr13I	GGNCC	1 cut(s)	55
CseI	GACGC	1 cut(s)	69
Csp6I	GTAC	3 cut(s)	349, 424, 514
CviAII	CATG	1 cut(s)	367
CviJI	RGCY	7 cut(s)	6, 125, 161, 181, 219, 322, 488
CviKI_1	RGCY	7 cut(s)	6, 125, 161, 181, 219, 322, 488
CviQI	GTAC	3 cut(s)	349, 424, 514
DdeI	CTNAG	5 cut(s)	336, 411, 441, 501, 519
DpnI	GATC	1 cut(s)	448
DpnII	GATC	1 cut(s)	446
EciI	GGCGGA	1 cut(s)	117
Eco47I	GGWCC	1 cut(s)	55
EcoRI	GAATTC	1 cut(s)	251
Esp3I	CGTCTC	1 cut(s)	141
FaeI	CATG	1 cut(s)	370
FaiI	YATR	2 cut(s)	368, 456
FaqI	GGGAC	1 cut(s)	452
FatI	CATG	1 cut(s)	366
Fnu4HI	GCNGC	2 cut(s)	7, 44
FokI	GGATG	1 cut(s)	153
Fsp4HI	GCNGC	2 cut(s)	7, 44
FspBI	CTAG	1 cut(s)	158
GluI	GCNGC	2 cut(s)	7, 44
HaeIII	GGCC	1 cut(s)	219
HapII	CCGG	2 cut(s)	122, 323
HgaI	GACGC	1 cut(s)	69
Hin1I	GRCGYC	1 cut(s)	61
Hin1II	CATG	1 cut(s)	370
HinfI	GANTC	4 cut(s)	236, 245, 275, 499
HpaII	CCGG	2 cut(s)	122, 323
HphI	GGTGA	3 cut(s)	94, 111, 188
Hpy188III	TCNNGA	1 cut(s)	175
Hpy99I	CGWCG	2 cut(s)	63, 311
HpyCH4III	ACNGT	3 cut(s)	13, 40, 476
HpyCH4V	TGCA	2 cut(s)	9, 51
HpyF10VI	GCNNNNNNNGC	4 cut(s)	86, 113, 122, 225
HpyF3I	CTNAG	5 cut(s)	336, 411, 441, 501, 519
Hsp92I	GRCGYC	1 cut(s)	61
Hsp92II	CATG	1 cut(s)	370
Kzo9I	GATC	1 cut(s)	446
LmnI	GCTCC	2 cut(s)	112, 130
LpnPI	CCDG	5 cut(s)	135, 210, 257, 336, 443
LweI	GCATC	2 cut(s)	67, 350
MaeI	CTAG	1 cut(s)	158
MaeIII	GTNAC	1 cut(s)	476
MalI	GATC	1 cut(s)	448
MbiI	CCGCTC	1 cut(s)	107
MboI	GATC	1 cut(s)	446
MboII	GAAGA	2 cut(s)	76, 247
MluCI	AATT	3 cut(s)	20, 251, 352
MlyI	GAGTC	4 cut(s)	230, 239, 284, 493
MmeI	TCCRAC	6 cut(s)	176, 222, 330, 396, 486, 504
MnlI	CCTC	9 cut(s)	25, 110, 121, 127, 142, 151, 174, 331, 473
MseI	TTAA	1 cut(s)	68
MspI	CCGG	2 cut(s)	122, 323
MwoI	GCNNNNNNNGC	4 cut(s)	86, 113, 122, 225
NdeII	GATC	1 cut(s)	446
NlaIII	CATG	1 cut(s)	370
NlaIV	GGNNCC	1 cut(s)	126
NspI	RCATGY	1 cut(s)	370
PcsI	WCGNNNNNNNCGW	3 cut(s)	303, 315, 432
PflFI	GACNNNGTC	1 cut(s)	502
PkrI	GCNGC	2 cut(s)	8, 45
PleI	GAGTC	4 cut(s)	230, 239, 283, 493
PpsI	GAGTC	4 cut(s)	230, 239, 283, 493
PspN4I	GGNNCC	1 cut(s)	126
PspPI	GGNCC	1 cut(s)	55
PsrI	GAACNNNNNNTAC	2 cut(s)	183, 215
PsyI	GACNNNGTC	1 cut(s)	502
RsaI	GTAC	3 cut(s)	350, 425, 515
RsaNI	GTAC	3 cut(s)	349, 424, 514
SaqAI	TTAA	1 cut(s)	68
SatI	GCNGC	2 cut(s)	7, 44
Sau3AI	GATC	1 cut(s)	446
Sau96I	GGNCC	1 cut(s)	55
SchI	GAGTC	4 cut(s)	230, 239, 284, 493
SetI	ASST	3 cut(s)	102, 201, 490
SfaNI	GCATC	2 cut(s)	67, 350
SinI	GGWCC	1 cut(s)	55
Sse9I	AATT	3 cut(s)	20, 251, 352
SsiI	CCGC	5 cut(s)	43, 105, 128, 205, 387
SspMI	CTAG	1 cut(s)	158
TaaI	ACNGT	3 cut(s)	13, 40, 476
TaqI	TCGA	2 cut(s)	234, 297
TaqII	GACCGA	1 cut(s)	72
TasI	AATT	3 cut(s)	20, 251, 352
TatI	WGTACW	1 cut(s)	348
TauI	GCSGC	1 cut(s)	46
Tru1I	TTAA	1 cut(s)	68
Tru9I	TTAA	1 cut(s)	68
TscAI	CASTG	2 cut(s)	43, 53
TseI	GCWGC	1 cut(s)	6
TspDTI	ATGAA	1 cut(s)	86
TspRI	CASTG	2 cut(s)	43, 53
Tth111I	GACNNNGTC	1 cut(s)	502
VpaK11BI	GGWCC	1 cut(s)	55
XapI	RAATTY	1 cut(s)	251
XceI	RCATGY	1 cut(s)	370
XspI	CTAG	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.