Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0007560

Physical Location & Seq

Genomic Coordinates Reverse (-)

13349903 .. 13350994

Gene Structure 1092 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011857

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGAGCTTCAAGAAGCTCAAAGCTTCAAACTTTGCCGTTGACAACACCGATCCGGAAACTGAAACCGAGACATTGGAGTACAATTACTTCCACAACATACCAAAATCCCAACCTGCCACCCACATAAACCTCTCATATTCTCACTCGGAGAAGTATGCCCAGTCCGAAACTGAGAGATCAGAGTACGATTTCTTTGTCCCCAACCGTAACCCTAAAGCTCCGACCAAGGCTCAGTTGGAGAAGTATGCTCAGTCGAAGAGAGAAGAGTCGGTTCAGGCCGAGTCGGTTACGAGCTCAGTGCCGCTAGCCCAGACGATGTCGAAGTATGCGTCGAGCATGAGGTCTGAGGGGTTGGAAGGGAGTACTTACCGGAGCAATGAAATCTCGAACATGAAAATGGTGGTGAGGCATAAAGAGTTGAAGGAGATTGTGGAGGAGATTAAGGAGAATTTCGATAAGGCCGTGGTGGCCCGAGACCAAGTTTCCGAGATGCTCGAGTCCAACCGGGCCCAGCTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0009987 GO:0010035 GO:0010167 GO:0015698 GO:0015706 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0070887 GO:0071229 GO:0071241 GO:0071249 GO:0071705 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF630 DUF632

Protein Analysis

174

Amino Acids

19.84

Weight (kDa)

5.51

Isoelectric Point (pI)

66.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007560)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000006991 RLG00000009793 RLG00000011857 RLG00000013125 RLG00000013975 RLG00000014809 RLG00000017041 RLG00000018430 RLG00000018921 RLG00000019889 RLG00000023155 RLG00000027020 RLG00000029579 RLG00000034055 RLG00000035664 RLG00000035941
rosa_multiflora	Rmu_sc0003379.1_g000011
rosa_roxburghii	Rroxscaffold_7G00200410
rosa_samantha	Rh1BG224300 Rh1BG224400 Rh1DG251900 Rh4DG089100 Rh7AG481800 Rh7BG089600 Rh7BG089700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	121
AccIII	TCCGGA	1 cut(s)	52
AciI	CCGC	1 cut(s)	302
AclWI	GGATC	1 cut(s)	44
AcsI	RAATTY	1 cut(s)	448
AfaI	GTAC	3 cut(s)	80, 185, 364
AgsI	TTSAA	3 cut(s)	10, 27, 421
AluBI	AGCT	6 cut(s)	6, 16, 23, 218, 294, 514
AluI	AGCT	6 cut(s)	6, 16, 23, 218, 294, 514
Alw21I	GWGCWC	1 cut(s)	296
Alw26I	GTCTC	2 cut(s)	62, 468
AlwI	GGATC	1 cut(s)	44
Ama87I	CYCGRG	2 cut(s)	471, 494
Aor13HI	TCCGGA	1 cut(s)	52
AoxI	GGCC	4 cut(s)	276, 459, 468, 507
ApaI	GGGCCC	1 cut(s)	511
ApoI	RAATTY	1 cut(s)	448
ArsI	GACNNNNNNTTYG	2 cut(s)	314, 346
AspS9I	GGNCC	3 cut(s)	469, 507, 508
AsuC2I	CCSGG	1 cut(s)	506
AsuHPI	GGTGA	1 cut(s)	415
AsuNHI	GCTAGC	1 cut(s)	304
AvaI	CYCGRG	2 cut(s)	471, 494
BaeGI	GKGCMC	1 cut(s)	511
BanII	GRGCYC	2 cut(s)	296, 511
BarI	GAAGNNNNNNTAC	2 cut(s)	71, 103
Bbv12I	GWGCWC	1 cut(s)	296
BceAI	ACGGC	2 cut(s)	20, 446
BcgI	CGANNNNNNTGC	2 cut(s)	280, 314
BcnI	CCSGG	1 cut(s)	506
BcoDI	GTCTC	2 cut(s)	62, 468
BfaI	CTAG	1 cut(s)	305
BfuAI	ACCTGC	1 cut(s)	121
BglI	GCCNNNNNGGC	1 cut(s)	467
BisI	GCNGC	1 cut(s)	302
BlsI	GCNGC	1 cut(s)	303
BmcAI	AGTACT	1 cut(s)	364
Bme1390I	CCNGG	1 cut(s)	506
BmeT110I	CYCGRG	2 cut(s)	471, 494
BmgT120I	GGNCC	3 cut(s)	469, 507, 508
BmiI	GGNNCC	1 cut(s)	509
BmrFI	CCNGG	1 cut(s)	506
BmrI	ACTGGG	1 cut(s)	154
BmsI	GCATC	1 cut(s)	480
BmtI	GCTAGC	1 cut(s)	308
BmuI	ACTGGG	1 cut(s)	154
BpuMI	CCSGG	1 cut(s)	506
BsaI	GGTCTC	1 cut(s)	468
BsaJI	CCNNGG	2 cut(s)	225, 462
BsaWI	WCCGGW	2 cut(s)	52, 369
Bse1I	ACTGG	1 cut(s)	160
Bse3DI	GCAATG	1 cut(s)	382
BseAI	TCCGGA	1 cut(s)	52
BseDI	CCNNGG	2 cut(s)	225, 462
BseMI	GCAATG	1 cut(s)	382
BseMII	CTCAG	5 cut(s)	162, 245, 263, 309, 336
BseNI	ACTGG	1 cut(s)	160
BseRI	GAGGAG	1 cut(s)	449
BseSI	GKGCMC	1 cut(s)	511
BseYI	CCCAGC	1 cut(s)	510
BshFI	GGCC	4 cut(s)	278, 461, 470, 509
BsiHKAI	GWGCWC	1 cut(s)	296
BsiHKCI	CYCGRG	2 cut(s)	471, 494
BsiSI	CCGG	3 cut(s)	53, 370, 505
BslFI	GGGAC	1 cut(s)	182
BsmAI	GTCTC	2 cut(s)	62, 468
BsmFI	GGGAC	1 cut(s)	182
BsnI	GGCC	4 cut(s)	278, 461, 470, 509
Bso31I	GGTCTC	1 cut(s)	468
BsoBI	CYCGRG	2 cut(s)	471, 494
Bsp120I	GGGCCC	1 cut(s)	507
Bsp1286I	GDGCHC	2 cut(s)	296, 511
Bsp13I	TCCGGA	1 cut(s)	52
Bsp143I	GATC	2 cut(s)	49, 176
BspACI	CCGC	1 cut(s)	302
BspANI	GGCC	4 cut(s)	278, 461, 470, 509
BspCNI	CTCAG	5 cut(s)	163, 244, 262, 308, 337
BspEI	TCCGGA	1 cut(s)	52
BspLI	GGNNCC	1 cut(s)	509
BspMI	ACCTGC	1 cut(s)	121
BspOI	GCTAGC	1 cut(s)	308
BspPI	GGATC	1 cut(s)	44
BspTNI	GGTCTC	1 cut(s)	468
BsrDI	GCAATG	1 cut(s)	382
BsrI	ACTGG	1 cut(s)	160
BssECI	CCNNGG	2 cut(s)	225, 462
BssMI	GATC	2 cut(s)	49, 176
BssT1I	CCWWGG	1 cut(s)	225
Bst4CI	ACNGT	1 cut(s)	206
Bst6I	CTCTTC	2 cut(s)	251, 258
BstC8I	GCNNGC	1 cut(s)	306
BstDEI	CTNAG	5 cut(s)	171, 231, 249, 295, 345
BstDSI	CCRYGG	1 cut(s)	462
BstKTI	GATC	2 cut(s)	52, 179
BstMAI	GTCTC	2 cut(s)	62, 468
BstMBI	GATC	2 cut(s)	49, 176
BstMWI	GCNNNNNNNGC	1 cut(s)	467
BstSCI	CCNGG	1 cut(s)	504
BstSLI	GKGCMC	1 cut(s)	511
BsuRI	GGCC	4 cut(s)	278, 461, 470, 509
BtgI	CCRYGG	1 cut(s)	462
BtsIMutI	CAGTG	1 cut(s)	303
BveI	ACCTGC	1 cut(s)	121
Cac8I	GCNNGC	1 cut(s)	306
Cfr13I	GGNCC	3 cut(s)	469, 507, 508
CseI	GACGC	1 cut(s)	318
Csp6I	GTAC	3 cut(s)	79, 184, 363
CviAII	CATG	2 cut(s)	337, 391
CviQI	GTAC	3 cut(s)	79, 184, 363
DdeI	CTNAG	5 cut(s)	171, 231, 249, 295, 345
DpnI	GATC	2 cut(s)	51, 178
DpnII	GATC	2 cut(s)	49, 176
Eam1104I	CTCTTC	2 cut(s)	251, 258
EarI	CTCTTC	2 cut(s)	251, 258
Ecl136II	GAGCTC	1 cut(s)	294
Eco130I	CCWWGG	1 cut(s)	225
Eco24I	GRGCYC	2 cut(s)	296, 511
Eco31I	GGTCTC	1 cut(s)	468
Eco53kI	GAGCTC	1 cut(s)	294
Eco88I	CYCGRG	2 cut(s)	471, 494
EcoICRI	GAGCTC	1 cut(s)	294
EcoT14I	CCWWGG	1 cut(s)	225
EcoT38I	GRGCYC	2 cut(s)	296, 511
ErhI	CCWWGG	1 cut(s)	225
FaeI	CATG	2 cut(s)	340, 394
FaiI	YATR	9 cut(s)	98, 125, 136, 156, 246, 327, 338, 392, 411
FaqI	GGGAC	1 cut(s)	182
FatI	CATG	2 cut(s)	336, 390
Fnu4HI	GCNGC	1 cut(s)	302
FriOI	GRGCYC	2 cut(s)	296, 511
Fsp4HI	GCNGC	1 cut(s)	302
FspBI	CTAG	1 cut(s)	305
GluI	GCNGC	1 cut(s)	302
GsaI	CCCAGC	1 cut(s)	514
HaeIII	GGCC	4 cut(s)	278, 461, 470, 509
HapII	CCGG	3 cut(s)	53, 370, 505
HgaI	GACGC	1 cut(s)	318
Hin1II	CATG	2 cut(s)	340, 394
HincII	GTYRAC	1 cut(s)	40
HindII	GTYRAC	1 cut(s)	40
HindIII	AAGCTT	1 cut(s)	21
HinfI	GANTC	3 cut(s)	266, 281, 497
HpaII	CCGG	3 cut(s)	53, 370, 505
HphI	GGTGA	1 cut(s)	415
Hpy166II	GTNNAC	1 cut(s)	40
Hpy188I	TCNGA	6 cut(s)	148, 166, 181, 222, 346, 487
Hpy188III	TCNNGA	3 cut(s)	10, 53, 385
Hpy8I	GTNNAC	1 cut(s)	40
Hpy99I	CGWCG	1 cut(s)	334
HpyAV	CCTTC	2 cut(s)	350, 415
HpyCH4III	ACNGT	1 cut(s)	206
HpyF10VI	GCNNNNNNNGC	1 cut(s)	467
HpyF3I	CTNAG	5 cut(s)	171, 231, 249, 295, 345
Hsp92II	CATG	2 cut(s)	340, 394
Kpn2I	TCCGGA	1 cut(s)	52
Kzo9I	GATC	2 cut(s)	49, 176
LmnI	GCTCC	2 cut(s)	223, 372
LpnPI	CCDG	7 cut(s)	66, 126, 173, 260, 323, 383, 518
LweI	GCATC	1 cut(s)	480
MaeI	CTAG	1 cut(s)	305
MaeIII	GTNAC	2 cut(s)	206, 286
MalI	GATC	2 cut(s)	51, 178
MboI	GATC	2 cut(s)	49, 176
MboII	GAAGA	2 cut(s)	268, 275
MhlI	GDGCHC	2 cut(s)	296, 511
MluCI	AATT	2 cut(s)	82, 448
MlyI	GAGTC	3 cut(s)	275, 290, 506
MmeI	TCCRAC	3 cut(s)	216, 245, 333
MnlI	CCTC	5 cut(s)	140, 333, 340, 399, 427
MroI	TCCGGA	1 cut(s)	52
MseI	TTAA	1 cut(s)	441
MslI	CAYNNNNRTG	1 cut(s)	395
MspI	CCGG	3 cut(s)	53, 370, 505
MspR9I	CCNGG	1 cut(s)	506
MwoI	GCNNNNNNNGC	1 cut(s)	467
NciI	CCSGG	1 cut(s)	506
NdeII	GATC	2 cut(s)	49, 176
NheI	GCTAGC	1 cut(s)	304
NlaIII	CATG	2 cut(s)	340, 394
NlaIV	GGNNCC	1 cut(s)	509
NmeAIII	GCCGAG	1 cut(s)	304
PaeR7I	CTCGAG	1 cut(s)	494
PcsI	WCGNNNNNNNCGW	2 cut(s)	326, 459
PflFI	GACNNNGTC	1 cut(s)	316
PkrI	GCNGC	1 cut(s)	303
PleI	GAGTC	3 cut(s)	274, 289, 505
PpsI	GAGTC	3 cut(s)	274, 289, 505
Psp124BI	GAGCTC	1 cut(s)	296
PspFI	CCCAGC	1 cut(s)	510
PspN4I	GGNNCC	1 cut(s)	509
PspOMI	GGGCCC	1 cut(s)	507
PspPI	GGNCC	3 cut(s)	469, 507, 508
PspXI	VCTCGAGB	1 cut(s)	494
PsyI	GACNNNGTC	1 cut(s)	316
RsaI	GTAC	3 cut(s)	80, 185, 364
RsaNI	GTAC	3 cut(s)	79, 184, 363
RseI	CAYNNNNRTG	1 cut(s)	395
SacI	GAGCTC	1 cut(s)	296
SaqAI	TTAA	1 cut(s)	441
SatI	GCNGC	1 cut(s)	302
Sau3AI	GATC	2 cut(s)	49, 176
Sau96I	GGNCC	3 cut(s)	469, 507, 508
ScaI	AGTACT	1 cut(s)	364
SchI	GAGTC	3 cut(s)	275, 290, 506
ScrFI	CCNGG	1 cut(s)	506
SduI	GDGCHC	2 cut(s)	296, 511
SetI	ASST	9 cut(s)	8, 18, 25, 115, 132, 220, 296, 344, 516
SfaNI	GCATC	1 cut(s)	480
SfiI	GGCCNNNNNGGCC	1 cut(s)	467
Sfr274I	CTCGAG	1 cut(s)	494
SlaI	CTCGAG	1 cut(s)	494
SmiMI	CAYNNNNRTG	1 cut(s)	395
SmlI	CTYRAG	1 cut(s)	494
SmoI	CTYRAG	1 cut(s)	494
Sse9I	AATT	2 cut(s)	82, 448
SsiI	CCGC	1 cut(s)	302
SspMI	CTAG	1 cut(s)	305
SstI	GAGCTC	1 cut(s)	296
StyD4I	CCNGG	1 cut(s)	504
StyI	CCWWGG	1 cut(s)	225
TaaI	ACNGT	1 cut(s)	206
TaqI	TCGA	6 cut(s)	254, 320, 332, 386, 453, 495
TasI	AATT	2 cut(s)	82, 448
TatI	WGTACW	2 cut(s)	78, 362
TauI	GCSGC	1 cut(s)	304
Tru1I	TTAA	1 cut(s)	441
Tru9I	TTAA	1 cut(s)	441
TscAI	CASTG	1 cut(s)	303
TspDTI	ATGAA	2 cut(s)	393, 407
TspRI	CASTG	1 cut(s)	303
Tth111I	GACNNNGTC	1 cut(s)	316
XapI	RAATTY	1 cut(s)	448
XcmI	CCANNNNNNNNNTGG	1 cut(s)	232
XhoI	CTCGAG	1 cut(s)	494
XspI	CTAG	1 cut(s)	305
ZrmI	AGTACT	1 cut(s)	364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.