Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0007560

Physical Location & Seq

Genomic Coordinates Forward (+)

6641297 .. 6641617

Gene Structure 321 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG089700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGCCCAAATCCCAACCCACCGCCCGCCAAAACCACTCGTATTCTCAGTCGGAGAAGTACGCCCAGTCCGAAACCGAGAGATCAGAGTACGATTTCTTCATCCCCAACCGTAACCCTAAAGCTCCGACCAAGACTCAGTCGGAGAAGTACGCTCAGTCGGAGAGAGAAGAGGTCCATTGCAGCGAGTGGGGCGATCACGATCGCTACAGCACCACGAGCTCGTCTGAAAACGAAGACGACTACAGGGATTCGAGATCCGAGATCCAAGAGGGATTTCCACACTCTCTCAGACGAAGGATGGGAGGAGCTGCACGACGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0009987 GO:0010035 GO:0010167 GO:0015698 GO:0015706 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0070887 GO:0071229 GO:0071241 GO:0071249 GO:0071705 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF630 DUF632

Protein Analysis

106

Amino Acids

12.45

Weight (kDa)

6.09

Isoelectric Point (pI)

100.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007560)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000006991 RLG00000009793 RLG00000011857 RLG00000013125 RLG00000013975 RLG00000014809 RLG00000017041 RLG00000018430 RLG00000018921 RLG00000019889 RLG00000023155 RLG00000027020 RLG00000029579 RLG00000034055 RLG00000035664 RLG00000035941
rosa_multiflora	Rmu_sc0003379.1_g000011
rosa_roxburghii	Rroxscaffold_7G00200410
rosa_samantha	Rh1BG224300 Rh1BG224400 Rh1DG251900 Rh4DG089100 Rh7AG481800 Rh7BG089600 Rh7BG089700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	21, 25
AclWI	GGATC	2 cut(s)	249, 256
AfaI	GTAC	3 cut(s)	59, 89, 149
AjuI	GAANNNNNNNTTGG	2 cut(s)	258, 290
AleI	CACNNNNGTG	1 cut(s)	316
AluBI	AGCT	3 cut(s)	122, 219, 308
AluI	AGCT	3 cut(s)	122, 219, 308
Alw21I	GWGCWC	1 cut(s)	221
AlwI	GGATC	2 cut(s)	249, 256
ApeKI	GCWGC	2 cut(s)	180, 308
AspS9I	GGNCC	1 cut(s)	172
AvaII	GGWCC	1 cut(s)	172
BanII	GRGCYC	1 cut(s)	221
BarI	GAAGNNNNNNTAC	2 cut(s)	80, 112
BauI	CACGAG	1 cut(s)	214
BbsI	GAAGAC	1 cut(s)	240
Bbv12I	GWGCWC	1 cut(s)	221
BbvI	GCAGC	2 cut(s)	192, 295
BccI	CCATC	1 cut(s)	292
BfmI	CTRYAG	2 cut(s)	205, 241
BisI	GCNGC	2 cut(s)	181, 309
BlsI	GCNGC	2 cut(s)	182, 310
Bme18I	GGWCC	1 cut(s)	172
BmgT120I	GGNCC	1 cut(s)	172
BmrI	ACTGGG	1 cut(s)	58
BmuI	ACTGGG	1 cut(s)	58
BpiI	GAAGAC	1 cut(s)	240
BsaBI	GATNNNNATC	1 cut(s)	198
Bse1I	ACTGG	1 cut(s)	64
Bse3DI	GCAATG	1 cut(s)	175
Bse8I	GATNNNNATC	1 cut(s)	198
BseGI	GGATG	2 cut(s)	99, 303
BseJI	GATNNNNATC	1 cut(s)	198
BseMI	GCAATG	1 cut(s)	175
BseMII	CTCAG	4 cut(s)	59, 149, 167, 301
BseNI	ACTGG	1 cut(s)	64
BseRI	GAGGAG	1 cut(s)	318
BseXI	GCAGC	2 cut(s)	192, 295
BsgI	GTGCAG	1 cut(s)	294
Bsh1285I	CGRYCG	1 cut(s)	202
BsiEI	CGRYCG	1 cut(s)	202
BsiHKAI	GWGCWC	1 cut(s)	221
Bsp1286I	GDGCHC	1 cut(s)	221
Bsp143I	GATC	5 cut(s)	80, 193, 199, 254, 261
BspACI	CCGC	2 cut(s)	21, 25
BspCNI	CTCAG	4 cut(s)	58, 148, 166, 300
BspPI	GGATC	2 cut(s)	249, 256
BsrDI	GCAATG	1 cut(s)	175
BsrI	ACTGG	1 cut(s)	64
BssMI	GATC	5 cut(s)	80, 193, 199, 254, 261
BssSI	CACGAG	1 cut(s)	214
Bst2BI	CACGAG	1 cut(s)	214
Bst4CI	ACNGT	2 cut(s)	110, 318
Bst6I	CTCTTC	1 cut(s)	162
BstC8I	GCNNGC	1 cut(s)	25
BstDEI	CTNAG	4 cut(s)	45, 135, 153, 287
BstF5I	GGATG	2 cut(s)	99, 303
BstKTI	GATC	5 cut(s)	83, 196, 202, 257, 264
BstMBI	GATC	5 cut(s)	80, 193, 199, 254, 261
BstMCI	CGRYCG	1 cut(s)	202
BstMWI	GCNNNNNNNGC	2 cut(s)	189, 216
BstSFI	CTRYAG	2 cut(s)	205, 241
BstV1I	GCAGC	2 cut(s)	192, 295
BstV2I	GAAGAC	1 cut(s)	240
BstX2I	RGATCY	2 cut(s)	254, 261
BstYI	RGATCY	2 cut(s)	254, 261
BtsCI	GGATG	2 cut(s)	99, 303
Cac8I	GCNNGC	1 cut(s)	25
Cfr13I	GGNCC	1 cut(s)	172
Csp6I	GTAC	3 cut(s)	58, 88, 148
CviJI	RGCY	3 cut(s)	122, 219, 308
CviKI_1	RGCY	3 cut(s)	122, 219, 308
CviQI	GTAC	3 cut(s)	58, 88, 148
DdeI	CTNAG	4 cut(s)	45, 135, 153, 287
DpnI	GATC	5 cut(s)	82, 195, 201, 256, 263
DpnII	GATC	5 cut(s)	80, 193, 199, 254, 261
Eam1104I	CTCTTC	1 cut(s)	162
EarI	CTCTTC	1 cut(s)	162
Ecl136II	GAGCTC	1 cut(s)	219
Eco24I	GRGCYC	1 cut(s)	221
Eco47I	GGWCC	1 cut(s)	172
Eco53kI	GAGCTC	1 cut(s)	219
EcoICRI	GAGCTC	1 cut(s)	219
EcoT38I	GRGCYC	1 cut(s)	221
FauI	CCCGC	1 cut(s)	32
Fnu4HI	GCNGC	2 cut(s)	181, 309
FokI	GGATG	2 cut(s)	86, 310
FriOI	GRGCYC	1 cut(s)	221
Fsp4HI	GCNGC	2 cut(s)	181, 309
GluI	GCNGC	2 cut(s)	181, 309
HinfI	GANTC	2 cut(s)	133, 248
Hpy188I	TCNGA	9 cut(s)	52, 70, 85, 126, 142, 160, 226, 259, 290
Hpy188III	TCNNGA	2 cut(s)	197, 252
Hpy99I	CGWCG	1 cut(s)	318
HpyAV	CCTTC	1 cut(s)	288
HpyCH4III	ACNGT	2 cut(s)	110, 318
HpyCH4V	TGCA	2 cut(s)	180, 311
HpyF10VI	GCNNNNNNNGC	2 cut(s)	189, 216
HpyF3I	CTNAG	4 cut(s)	45, 135, 153, 287
Kzo9I	GATC	5 cut(s)	80, 193, 199, 254, 261
LmnI	GCTCC	2 cut(s)	127, 305
LpnPI	CCDG	2 cut(s)	77, 229
Lsp1109I	GCAGC	2 cut(s)	192, 295
MaeIII	GTNAC	1 cut(s)	110
MalI	GATC	5 cut(s)	82, 195, 201, 256, 263
MboI	GATC	5 cut(s)	80, 193, 199, 254, 261
MboII	GAAGA	3 cut(s)	88, 179, 245
MflI	RGATCY	2 cut(s)	254, 261
MhlI	GDGCHC	1 cut(s)	221
MlyI	GAGTC	1 cut(s)	127
MmeI	TCCRAC	4 cut(s)	30, 120, 138, 149
MnlI	CCTC	3 cut(s)	163, 262, 296
MslI	CAYNNNNRTG	1 cut(s)	316
MwoI	GCNNNNNNNGC	2 cut(s)	189, 216
NdeII	GATC	5 cut(s)	80, 193, 199, 254, 261
OliI	CACNNNNGTG	1 cut(s)	316
PcsI	WCGNNNNNNNCGW	1 cut(s)	66
PfeI	GAWTC	1 cut(s)	248
PflFI	GACNNNGTC	1 cut(s)	136
PkrI	GCNGC	2 cut(s)	182, 310
Ple19I	CGATCG	1 cut(s)	202
PleI	GAGTC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	127
Psp124BI	GAGCTC	1 cut(s)	221
PspPI	GGNCC	1 cut(s)	172
PsuI	RGATCY	2 cut(s)	254, 261
PsyI	GACNNNGTC	1 cut(s)	136
PvuI	CGATCG	1 cut(s)	202
RsaI	GTAC	3 cut(s)	59, 89, 149
RsaNI	GTAC	3 cut(s)	58, 88, 148
RseI	CAYNNNNRTG	1 cut(s)	316
SacI	GAGCTC	1 cut(s)	221
SatI	GCNGC	2 cut(s)	181, 309
Sau3AI	GATC	5 cut(s)	80, 193, 199, 254, 261
Sau96I	GGNCC	1 cut(s)	172
SchI	GAGTC	1 cut(s)	127
SduI	GDGCHC	1 cut(s)	221
SetI	ASST	4 cut(s)	124, 174, 221, 310
SfcI	CTRYAG	2 cut(s)	205, 241
SinI	GGWCC	1 cut(s)	172
SmiMI	CAYNNNNRTG	1 cut(s)	316
SsiI	CCGC	2 cut(s)	21, 25
SstI	GAGCTC	1 cut(s)	221
TaaI	ACNGT	2 cut(s)	110, 318
TaqI	TCGA	1 cut(s)	251
TfiI	GAWTC	1 cut(s)	248
TseI	GCWGC	2 cut(s)	180, 308
TspDTI	ATGAA	1 cut(s)	88
Tth111I	GACNNNGTC	1 cut(s)	136
VpaK11BI	GGWCC	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.