Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0007560

Physical Location & Seq

Genomic Coordinates Forward (+)

26479299 .. 26482218

Gene Structure 2920 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013125

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGGGACCCGATCCAATTTCGACCCGTCGGTTCAGGCCGAGTCGGTTGCGGGCTCAGTGCCGCCAGCCCAGACGATGTTGAAGTATGCGCCGAGCATGAGGTCAGAGGGGTTGGAAGGGAGTACTTACCGGAGCATTGAAATCTCGAACATGAAAATGGTGTCTCGTCCGGCGGCTCCCGCGCCGAGCGGGGCCTTTGGTCTTGTTGGAATGCGCTCTGAGGCTATGGAGGTCGCGGCACAGGTCCCATACAGTAGCGGCGTGAGGGGGGAGATCGATAGCTTGGGGTGCTGCGGATCCACATCTGGTGGGATTTGGGTTTGTGTTCAGTACGCCGGGTCTCGTTCGGACTTCTTGGAACGTCGTCGAGGTGGCAAAACGATGGGGTATGCTTGGACTGGTGGTGGCGGTTGTGGCAGGGGTGGTGGTCGTGTTTGCAGCTGTGCAGCAGGTGTCTGGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0009987 GO:0010035 GO:0010167 GO:0015698 GO:0015706 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0070887 GO:0071229 GO:0071241 GO:0071249 GO:0071705 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF630 DUF632

Protein Analysis

155

Amino Acids

15.83

Weight (kDa)

8.85

Isoelectric Point (pI)

63.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007560)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000006991 RLG00000009793 RLG00000011857 RLG00000013125 RLG00000013975 RLG00000014809 RLG00000017041 RLG00000018430 RLG00000018921 RLG00000019889 RLG00000023155 RLG00000027020 RLG00000029579 RLG00000034055 RLG00000035664 RLG00000035941
rosa_multiflora	Rmu_sc0003379.1_g000011
rosa_roxburghii	Rroxscaffold_7G00200410
rosa_samantha	Rh1BG224300 Rh1BG224400 Rh1DG251900 Rh4DG089100 Rh7AG481800 Rh7BG089600 Rh7BG089700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	440
Acc36I	ACCTGC	1 cut(s)	440
AccBSI	CCGCTC	1 cut(s)	189
AccII	CGCG	2 cut(s)	182, 236
AciI	CCGC	9 cut(s)	50, 62, 173, 180, 189, 236, 258, 294, 408
AclWI	GGATC	3 cut(s)	6, 291, 304
AfaI	GTAC	2 cut(s)	124, 332
AgsI	TTSAA	2 cut(s)	82, 140
AluBI	AGCT	2 cut(s)	282, 441
AluI	AGCT	2 cut(s)	282, 441
Alw26I	GTCTC	2 cut(s)	168, 345
AlwI	GGATC	3 cut(s)	6, 291, 304
AoxI	GGCC	3 cut(s)	36, 192, 459
ApeKI	GCWGC	3 cut(s)	291, 438, 446
AspLEI	GCGC	3 cut(s)	91, 184, 216
AspS9I	GGNCC	4 cut(s)	6, 192, 244, 459
AsuC2I	CCSGG	1 cut(s)	337
AvaII	GGWCC	2 cut(s)	6, 244
BamHI	GGATCC	1 cut(s)	296
BanII	GRGCYC	1 cut(s)	56
BbvI	GCAGC	3 cut(s)	278, 450, 458
BccI	CCATC	1 cut(s)	376
BcgI	CGANNNNNNTGC	2 cut(s)	29, 63
BcnI	CCSGG	1 cut(s)	337
BcoDI	GTCTC	2 cut(s)	168, 345
BfuAI	ACCTGC	1 cut(s)	440
BisI	GCNGC	7 cut(s)	62, 174, 237, 259, 292, 439, 447
BlsI	GCNGC	7 cut(s)	63, 175, 238, 260, 293, 440, 448
BmcAI	AGTACT	1 cut(s)	124
Bme1390I	CCNGG	1 cut(s)	337
Bme18I	GGWCC	2 cut(s)	6, 244
BmgT120I	GGNCC	4 cut(s)	6, 192, 244, 459
BmiI	GGNNCC	6 cut(s)	7, 8, 177, 193, 246, 298
BmrFI	CCNGG	1 cut(s)	337
BpuMI	CCSGG	1 cut(s)	337
Bsa29I	ATCGAT	1 cut(s)	276
BsaBI	GATNNNNATC	1 cut(s)	301
BsaI	GGTCTC	1 cut(s)	345
BsaWI	WCCGGW	1 cut(s)	129
Bse1I	ACTGG	1 cut(s)	403
Bse8I	GATNNNNATC	1 cut(s)	301
BseCI	ATCGAT	1 cut(s)	276
BseJI	GATNNNNATC	1 cut(s)	301
BseMII	CTCAG	2 cut(s)	69, 210
BseNI	ACTGG	1 cut(s)	403
BseXI	GCAGC	3 cut(s)	278, 450, 458
BsgI	GTGCAG	1 cut(s)	465
Bsh1236I	CGCG	2 cut(s)	182, 236
BshFI	GGCC	3 cut(s)	38, 194, 461
BshVI	ATCGAT	1 cut(s)	276
BsiSI	CCGG	3 cut(s)	130, 170, 336
BslFI	GGGAC	2 cut(s)	19, 230
BsmAI	GTCTC	2 cut(s)	168, 345
BsmFI	GGGAC	2 cut(s)	19, 230
BsmI	GAATGC	1 cut(s)	216
BsnI	GGCC	3 cut(s)	38, 194, 461
Bso31I	GGTCTC	1 cut(s)	345
Bsp1286I	GDGCHC	1 cut(s)	56
Bsp143I	GATC	3 cut(s)	11, 273, 296
BspACI	CCGC	9 cut(s)	50, 62, 173, 180, 189, 236, 258, 294, 408
BspANI	GGCC	3 cut(s)	38, 194, 461
BspCNI	CTCAG	2 cut(s)	68, 211
BspDI	ATCGAT	1 cut(s)	276
BspFNI	CGCG	2 cut(s)	182, 236
BspLI	GGNNCC	6 cut(s)	7, 8, 177, 193, 246, 298
BspMI	ACCTGC	1 cut(s)	440
BspPI	GGATC	3 cut(s)	6, 291, 304
BspTNI	GGTCTC	1 cut(s)	345
BsrBI	CCGCTC	1 cut(s)	189
BsrI	ACTGG	1 cut(s)	403
BssMI	GATC	3 cut(s)	11, 273, 296
Bst4CI	ACNGT	1 cut(s)	254
BstC8I	GCNNGC	2 cut(s)	52, 66
BstDEI	CTNAG	2 cut(s)	55, 219
BstFNI	CGCG	2 cut(s)	182, 236
BstHHI	GCGC	3 cut(s)	91, 184, 216
BstKTI	GATC	3 cut(s)	14, 276, 299
BstMAI	GTCTC	2 cut(s)	168, 345
BstMBI	GATC	3 cut(s)	11, 273, 296
BstMWI	GCNNNNNNNGC	3 cut(s)	179, 288, 414
BstSCI	CCNGG	1 cut(s)	335
BstUI	CGCG	2 cut(s)	182, 236
BstV1I	GCAGC	3 cut(s)	278, 450, 458
BstX2I	RGATCY	1 cut(s)	296
BstYI	RGATCY	1 cut(s)	296
Bsu15I	ATCGAT	1 cut(s)	276
BsuRI	GGCC	3 cut(s)	38, 194, 461
BsuTUI	ATCGAT	1 cut(s)	276
BtsIMutI	CAGTG	1 cut(s)	63
BveI	ACCTGC	1 cut(s)	440
Cac8I	GCNNGC	2 cut(s)	52, 66
CfoI	GCGC	3 cut(s)	91, 184, 216
Cfr13I	GGNCC	4 cut(s)	6, 192, 244, 459
ClaI	ATCGAT	1 cut(s)	276
Csp6I	GTAC	2 cut(s)	123, 331
CviAII	CATG	2 cut(s)	97, 151
CviJI	RGCY	9 cut(s)	38, 54, 68, 176, 194, 224, 282, 441, 461
CviKI_1	RGCY	9 cut(s)	38, 54, 68, 176, 194, 224, 282, 441, 461
CviQI	GTAC	2 cut(s)	123, 331
DdeI	CTNAG	2 cut(s)	55, 219
DpnI	GATC	3 cut(s)	13, 275, 298
DpnII	GATC	3 cut(s)	11, 273, 296
Eco24I	GRGCYC	1 cut(s)	56
Eco31I	GGTCTC	1 cut(s)	345
Eco47I	GGWCC	2 cut(s)	6, 244
EcoO109I	RGGNCCY	3 cut(s)	6, 192, 244
EcoT38I	GRGCYC	1 cut(s)	56
FaeI	CATG	2 cut(s)	100, 154
FaiI	YATR	6 cut(s)	87, 98, 152, 227, 250, 390
FaqI	GGGAC	2 cut(s)	19, 230
FatI	CATG	2 cut(s)	96, 150
FauI	CCCGC	3 cut(s)	43, 182, 187
Fnu4HI	GCNGC	7 cut(s)	62, 174, 237, 259, 292, 439, 447
FriOI	GRGCYC	1 cut(s)	56
Fsp4HI	GCNGC	7 cut(s)	62, 174, 237, 259, 292, 439, 447
GlaI	GCGC	3 cut(s)	90, 183, 215
GluI	GCNGC	7 cut(s)	62, 174, 237, 259, 292, 439, 447
HaeIII	GGCC	3 cut(s)	38, 194, 461
HapII	CCGG	3 cut(s)	130, 170, 336
HhaI	GCGC	3 cut(s)	91, 184, 216
Hin1II	CATG	2 cut(s)	100, 154
Hin6I	GCGC	3 cut(s)	89, 182, 214
HinP1I	GCGC	3 cut(s)	89, 182, 214
HinfI	GANTC	1 cut(s)	41
HpaII	CCGG	3 cut(s)	130, 170, 336
Hpy188I	TCNGA	3 cut(s)	106, 220, 349
Hpy188III	TCNNGA	1 cut(s)	145
Hpy99I	CGWCG	3 cut(s)	31, 366, 369
HpyAV	CCTTC	1 cut(s)	110
HpyCH4III	ACNGT	1 cut(s)	254
HpyCH4IV	ACGT	1 cut(s)	361
HpyCH4V	TGCA	2 cut(s)	438, 446
HpyF10VI	GCNNNNNNNGC	3 cut(s)	179, 288, 414
HpyF3I	CTNAG	2 cut(s)	55, 219
HpySE526I	ACGT	1 cut(s)	361
Hsp92II	CATG	2 cut(s)	100, 154
HspAI	GCGC	3 cut(s)	89, 182, 214
KflI	GGGWCCC	1 cut(s)	6
Kzo9I	GATC	3 cut(s)	11, 273, 296
LmnI	GCTCC	2 cut(s)	132, 181
Lsp1109I	GCAGC	3 cut(s)	278, 450, 458
MaeII	ACGT	1 cut(s)	361
MalI	GATC	3 cut(s)	13, 275, 298
MbiI	CCGCTC	1 cut(s)	189
MboI	GATC	3 cut(s)	11, 273, 296
MflI	RGATCY	1 cut(s)	296
MhlI	GDGCHC	1 cut(s)	56
MluCI	AATT	1 cut(s)	16
MlyI	GAGTC	1 cut(s)	50
MmeI	TCCRAC	2 cut(s)	93, 187
MnlI	CCTC	6 cut(s)	93, 100, 214, 223, 258, 362
MslI	CAYNNNNRTG	1 cut(s)	155
MspA1I	CMGCKG	1 cut(s)	441
MspI	CCGG	3 cut(s)	130, 170, 336
MspR9I	CCNGG	1 cut(s)	337
Mva1269I	GAATGC	1 cut(s)	216
MvnI	CGCG	2 cut(s)	182, 236
MwoI	GCNNNNNNNGC	3 cut(s)	179, 288, 414
NciI	CCSGG	1 cut(s)	337
NdeII	GATC	3 cut(s)	11, 273, 296
NlaIII	CATG	2 cut(s)	100, 154
NlaIV	GGNNCC	6 cut(s)	7, 8, 177, 193, 246, 298
NmeAIII	GCCGAG	3 cut(s)	64, 117, 210
PaqCI	CACCTGC	1 cut(s)	440
PctI	GAATGC	1 cut(s)	216
PkrI	GCNGC	7 cut(s)	63, 175, 238, 260, 293, 440, 448
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
PpuMI	RGGWCCY	2 cut(s)	6, 244
Psp5II	RGGWCCY	2 cut(s)	6, 244
PspN4I	GGNNCC	6 cut(s)	7, 8, 177, 193, 246, 298
PspPI	GGNCC	4 cut(s)	6, 192, 244, 459
PspPPI	RGGWCCY	2 cut(s)	6, 244
PsuI	RGATCY	1 cut(s)	296
PvuII	CAGCTG	1 cut(s)	441
RsaI	GTAC	2 cut(s)	124, 332
RsaNI	GTAC	2 cut(s)	123, 331
RseI	CAYNNNNRTG	1 cut(s)	155
SatI	GCNGC	7 cut(s)	62, 174, 237, 259, 292, 439, 447
Sau3AI	GATC	3 cut(s)	11, 273, 296
Sau96I	GGNCC	4 cut(s)	6, 192, 244, 459
ScaI	AGTACT	1 cut(s)	124
SchI	GAGTC	1 cut(s)	50
ScrFI	CCNGG	1 cut(s)	337
SduI	GDGCHC	1 cut(s)	56
SetI	ASST	8 cut(s)	104, 234, 246, 284, 364, 373, 443, 454
SinI	GGWCC	2 cut(s)	6, 244
SmiMI	CAYNNNNRTG	1 cut(s)	155
Sse9I	AATT	1 cut(s)	16
SsiI	CCGC	9 cut(s)	50, 62, 173, 180, 189, 236, 258, 294, 408
StyD4I	CCNGG	1 cut(s)	335
TaaI	ACNGT	1 cut(s)	254
TaiI	ACGT	1 cut(s)	364
TaqI	TCGA	4 cut(s)	21, 146, 276, 367
TasI	AATT	1 cut(s)	16
TatI	WGTACW	1 cut(s)	122
TauI	GCSGC	4 cut(s)	64, 176, 239, 261
TscAI	CASTG	1 cut(s)	63
TseI	GCWGC	3 cut(s)	291, 438, 446
TspDTI	ATGAA	1 cut(s)	167
TspRI	CASTG	1 cut(s)	63
VpaK11BI	GGWCC	2 cut(s)	6, 244
ZrmI	AGTACT	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.