Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003379.1

Orthogroup ID

OG0007560

Physical Location & Seq

Genomic Coordinates Forward (+)

39089 .. 39310

Gene Structure 222 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003379.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

atgggctacacggtgtccaaattggacaacgaggacactgtgcggcggtggaaggaccgacgccgtttaatgaaagacgttatcttcgcctgccaccacctcgtcgctgcccacgccgactactgtcactccctccgcctcaccggctcctccctctctatctccgacaccaaaccctcctccactcccctaagccagaactcgaacttcacctacgactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0009987 GO:0010035 GO:0010167 GO:0015698 GO:0015706 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0070887 GO:0071229 GO:0071241 GO:0071249 GO:0071705 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF630 DUF632

Protein Analysis

73

Amino Acids

8.35

Weight (kDa)

8.71

Isoelectric Point (pI)

60.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007560)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000006991 RLG00000009793 RLG00000011857 RLG00000013125 RLG00000013975 RLG00000014809 RLG00000017041 RLG00000018430 RLG00000018921 RLG00000019889 RLG00000023155 RLG00000027020 RLG00000029579 RLG00000034055 RLG00000035664 RLG00000035941
rosa_multiflora	Rmu_sc0003379.1_g000011
rosa_roxburghii	Rroxscaffold_7G00200410
rosa_samantha	Rh1BG224300 Rh1BG224400 Rh1DG251900 Rh4DG089100 Rh7AG481800 Rh7BG089600 Rh7BG089700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	43, 46, 136
AcyI	GRCGYC	1 cut(s)	61
ApeKI	GCWGC	1 cut(s)	107
ArsI	GACNNNNNNTTYG	2 cut(s)	68, 100
AspS9I	GGNCC	1 cut(s)	55
AsuHPI	GGTGA	2 cut(s)	133, 202
AvaII	GGWCC	1 cut(s)	55
BbvI	GCAGC	1 cut(s)	94
BceAI	ACGGC	1 cut(s)	48
BglI	GCCNNNNNGGC	1 cut(s)	144
BisI	GCNGC	2 cut(s)	44, 108
BlsI	GCNGC	2 cut(s)	45, 109
Bme18I	GGWCC	1 cut(s)	55
BmgT120I	GGNCC	1 cut(s)	55
BmiI	GGNNCC	1 cut(s)	148
BoxI	GACNNNNGTC	1 cut(s)	123
Bpu10I	CCTNAGC	1 cut(s)	191
BsaHI	GRCGYC	1 cut(s)	61
BsaXI	ACNNNNNCTCC	2 cut(s)	113, 143
Bse118I	RCCGGY	1 cut(s)	143
BseRI	GAGGAG	2 cut(s)	139, 169
BseXI	GCAGC	1 cut(s)	94
BsiSI	CCGG	1 cut(s)	144
BspACI	CCGC	3 cut(s)	43, 46, 136
BspLI	GGNNCC	1 cut(s)	148
BsrFI	RCCGGY	1 cut(s)	143
BssAI	RCCGGY	1 cut(s)	143
BssNI	GRCGYC	1 cut(s)	61
Bst4CI	ACNGT	3 cut(s)	13, 40, 125
BstACI	GRCGYC	1 cut(s)	61
BstC8I	GCNNGC	1 cut(s)	91
BstDEI	CTNAG	1 cut(s)	191
BstMWI	GCNNNNNNNGC	2 cut(s)	113, 144
BstPAI	GACNNNNGTC	1 cut(s)	123
BstV1I	GCAGC	1 cut(s)	94
BtsIMutI	CAGTG	1 cut(s)	36
Cac8I	GCNNGC	1 cut(s)	91
Cfr10I	RCCGGY	1 cut(s)	143
Cfr13I	GGNCC	1 cut(s)	55
CseI	GACGC	1 cut(s)	69
CviJI	RGCY	3 cut(s)	6, 147, 195
CviKI_1	RGCY	3 cut(s)	6, 147, 195
DdeI	CTNAG	1 cut(s)	191
EciI	GGCGGA	1 cut(s)	125
Eco47I	GGWCC	1 cut(s)	55
Fnu4HI	GCNGC	2 cut(s)	44, 108
Fsp4HI	GCNGC	2 cut(s)	44, 108
GluI	GCNGC	2 cut(s)	44, 108
HapII	CCGG	1 cut(s)	144
HgaI	GACGC	1 cut(s)	69
Hin1I	GRCGYC	1 cut(s)	61
HpaII	CCGG	1 cut(s)	144
HphI	GGTGA	2 cut(s)	133, 202
Hpy188I	TCNGA	1 cut(s)	166
Hpy99I	CGWCG	2 cut(s)	63, 107
HpyAV	CCTTC	1 cut(s)	46
HpyCH4III	ACNGT	3 cut(s)	13, 40, 125
HpyCH4IV	ACGT	1 cut(s)	78
HpyF10VI	GCNNNNNNNGC	2 cut(s)	113, 144
HpyF3I	CTNAG	1 cut(s)	191
HpySE526I	ACGT	1 cut(s)	78
Hsp92I	GRCGYC	1 cut(s)	61
LmnI	GCTCC	1 cut(s)	152
LpnPI	CCDG	3 cut(s)	103, 157, 209
Lsp1109I	GCAGC	1 cut(s)	94
MaeII	ACGT	1 cut(s)	78
MaeIII	GTNAC	1 cut(s)	125
MboII	GAAGA	1 cut(s)	76
MluCI	AATT	1 cut(s)	20
MmeI	TCCRAC	1 cut(s)	189
MnlI	CCTC	8 cut(s)	25, 110, 143, 149, 160, 164, 187, 190
MseI	TTAA	1 cut(s)	68
MspI	CCGG	1 cut(s)	144
MwoI	GCNNNNNNNGC	2 cut(s)	113, 144
NlaIV	GGNNCC	1 cut(s)	148
NmuCI	GTSAC	1 cut(s)	125
PkrI	GCNGC	2 cut(s)	45, 109
PshAI	GACNNNNGTC	1 cut(s)	123
PspN4I	GGNNCC	1 cut(s)	148
PspPI	GGNCC	1 cut(s)	55
PsrI	GAACNNNNNNTAC	1 cut(s)	197
SaqAI	TTAA	1 cut(s)	68
SatI	GCNGC	2 cut(s)	44, 108
Sau96I	GGNCC	1 cut(s)	55
SetI	ASST	3 cut(s)	81, 102, 215
SgeI	CNNG	8 cut(s)	22, 43, 102, 113, 125, 156, 208, 214
SinI	GGWCC	1 cut(s)	55
Sse9I	AATT	1 cut(s)	20
SsiI	CCGC	3 cut(s)	43, 46, 136
TaaI	ACNGT	3 cut(s)	13, 40, 125
TaiI	ACGT	1 cut(s)	81
TaqI	TCGA	1 cut(s)	203
TaqII	GACCGA	1 cut(s)	72
TasI	AATT	1 cut(s)	20
TauI	GCSGC	1 cut(s)	46
Tru1I	TTAA	1 cut(s)	68
Tru9I	TTAA	1 cut(s)	68
TscAI	CASTG	1 cut(s)	43
TseFI	GTSAC	1 cut(s)	125
TseI	GCWGC	1 cut(s)	107
Tsp45I	GTSAC	1 cut(s)	125
TspDTI	ATGAA	1 cut(s)	86
TspRI	CASTG	1 cut(s)	43
VpaK11BI	GGWCC	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.