Rh1BG224400

Protein of unknown function (DUF632)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0007560
Physical Location & Seq
Reverse (-)
34368377 .. 34368679
303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG224400.1

Sequence Viewer

Length: 303 bp
ATGGGCTGCACGGCGTCCAAATTGGACAACGACGACACTGTGCGGCGGTGCAAGGACCGACGCAGTTTAATGAAAGACGTCGTCTTCGCCAGCCACCACCTCGTCGCCGCTCACGCCGACTACTGCCGCTCCCTCCGCCTCACTAGCTCCGCCCTCGTCTCCCTCTCCATCTCCGACACCAACCCCTCCTCTACTCCCCAGAGCCAGAACTCGAACTTCACCTGCGGCGGATTTCCGACGGCCTTTCAGGCGAACTCGAAGTACTCCAGCACGCCGTCGCAAGCCTCCTCCGTGTGGAATTAG

Protein Analysis

100

Amino Acids

10.82

Weight (kDa)

8.84

Isoelectric Point (pI)

51.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF630 PF04783 1 - 53 1.7e-19 Protein of unknown function (DUF630)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 230
AatII GACGTC 1 cut(s) 81
Acc36I ACCTGC 1 cut(s) 230
AccBSI CCGCTC 2 cut(s) 110, 129
AciI CCGC 8 cut(s) 43, 46, 108, 127, 136, 150, 225, 228
AcyI GRCGYC 2 cut(s) 14, 78
AfaI GTAC 1 cut(s) 263
AfiI CCNNNNNNNGG 1 cut(s) 294
AluBI AGCT 1 cut(s) 147
AluI AGCT 1 cut(s) 147
Alw26I GTCTC 1 cut(s) 163
AoxI GGCC 1 cut(s) 240
ApeKI GCWGC 1 cut(s) 6
ArsI GACNNNNNNTTYG 2 cut(s) 68, 100
AspS9I GGNCC 1 cut(s) 55
AsuHPI GGTGA 1 cut(s) 211
AvaII GGWCC 1 cut(s) 55
BbsI GAAGAC 1 cut(s) 76
BccI CCATC 1 cut(s) 176
BceAI ACGGC 3 cut(s) 27, 255, 259
BcoDI GTCTC 1 cut(s) 163
BfaI CTAG 1 cut(s) 144
BfuAI ACCTGC 1 cut(s) 230
BglI GCCNNNNNGGC 1 cut(s) 248
BisI GCNGC 5 cut(s) 7, 44, 108, 127, 226
BlsI GCNGC 5 cut(s) 8, 45, 109, 128, 227
BmcAI AGTACT 1 cut(s) 263
Bme18I GGWCC 1 cut(s) 55
BmgT120I GGNCC 1 cut(s) 55
BpiI GAAGAC 1 cut(s) 76
BpmI CTGGAG 1 cut(s) 250
BsaHI GRCGYC 2 cut(s) 14, 78
BsaXI ACNNNNNCTCC 2 cut(s) 113, 143
Bsc4I CCNNNNNNNGG 1 cut(s) 294
BseLI CCNNNNNNNGG 1 cut(s) 294
BseRI GAGGAG 2 cut(s) 178, 277
BshFI GGCC 1 cut(s) 242
BslI CCNNNNNNNGG 1 cut(s) 294
BsmAI GTCTC 1 cut(s) 163
BsmBI CGTCTC 1 cut(s) 163
BsnI GGCC 1 cut(s) 242
BspACI CCGC 8 cut(s) 43, 46, 108, 127, 136, 150, 225, 228
BspANI GGCC 1 cut(s) 242
BspMI ACCTGC 1 cut(s) 230
BsrBI CCGCTC 2 cut(s) 110, 129
BssNI GRCGYC 2 cut(s) 14, 78
Bst4CI ACNGT 1 cut(s) 40
BstACI GRCGYC 2 cut(s) 14, 78
BstC8I GCNNGC 3 cut(s) 91, 272, 282
BstMAI GTCTC 1 cut(s) 163
BstMWI GCNNNNNNNGC 4 cut(s) 113, 135, 144, 248
BstV2I GAAGAC 1 cut(s) 76
BsuRI GGCC 1 cut(s) 242
BtsIMutI CAGTG 1 cut(s) 36
BveI ACCTGC 1 cut(s) 230
Cac8I GCNNGC 3 cut(s) 91, 272, 282
Cfr13I GGNCC 1 cut(s) 55
CseI GACGC 2 cut(s) 3, 69
Csp6I GTAC 1 cut(s) 262
CviJI RGCY 6 cut(s) 6, 93, 147, 204, 242, 284
CviKI_1 RGCY 6 cut(s) 6, 93, 147, 204, 242, 284
CviQI GTAC 1 cut(s) 262
EciI GGCGGA 3 cut(s) 125, 139, 243
Eco47I GGWCC 1 cut(s) 55
Esp3I CGTCTC 1 cut(s) 163
Fnu4HI GCNGC 5 cut(s) 7, 44, 108, 127, 226
Fsp4HI GCNGC 5 cut(s) 7, 44, 108, 127, 226
FspBI CTAG 1 cut(s) 144
GluI GCNGC 5 cut(s) 7, 44, 108, 127, 226
GsuI CTGGAG 1 cut(s) 250
HaeIII GGCC 1 cut(s) 242
HgaI GACGC 2 cut(s) 3, 69
Hin1I GRCGYC 2 cut(s) 14, 78
HphI GGTGA 1 cut(s) 211
Hpy188I TCNGA 2 cut(s) 175, 237
Hpy99I CGWCG 6 cut(s) 35, 63, 83, 107, 241, 280
HpyCH4III ACNGT 1 cut(s) 40
HpyCH4IV ACGT 1 cut(s) 78
HpyCH4V TGCA 2 cut(s) 9, 51
HpyF10VI GCNNNNNNNGC 4 cut(s) 113, 135, 144, 248
HpySE526I ACGT 1 cut(s) 78
Hsp92I GRCGYC 2 cut(s) 14, 78
LmnI GCTCC 2 cut(s) 134, 152
LpnPI CCDG 6 cut(s) 103, 212, 218, 233, 235, 280
MaeI CTAG 1 cut(s) 144
MaeII ACGT 1 cut(s) 78
MbiI CCGCTC 2 cut(s) 110, 129
MboII GAAGA 1 cut(s) 76
MluCI AATT 2 cut(s) 20, 298
MmeI TCCRAC 2 cut(s) 198, 260
MnlI CCTC 9 cut(s) 110, 143, 149, 164, 173, 196, 199, 295, 298
MseI TTAA 1 cut(s) 68
MwoI GCNNNNNNNGC 4 cut(s) 113, 135, 144, 248
PaqCI CACCTGC 1 cut(s) 230
PflFI GACNNNGTC 1 cut(s) 80
PkrI GCNGC 5 cut(s) 8, 45, 109, 128, 227
PspPI GGNCC 1 cut(s) 55
PsrI GAACNNNNNNTAC 2 cut(s) 245, 277
PsyI GACNNNGTC 1 cut(s) 80
RsaI GTAC 1 cut(s) 263
RsaNI GTAC 1 cut(s) 262
SaqAI TTAA 1 cut(s) 68
SatI GCNGC 5 cut(s) 7, 44, 108, 127, 226
Sau96I GGNCC 1 cut(s) 55
ScaI AGTACT 1 cut(s) 263
SetI ASST 4 cut(s) 81, 102, 149, 224
SinI GGWCC 1 cut(s) 55
Sse9I AATT 2 cut(s) 20, 298
SsiI CCGC 8 cut(s) 43, 46, 108, 127, 136, 150, 225, 228
SspMI CTAG 1 cut(s) 144
TaaI ACNGT 1 cut(s) 40
TaiI ACGT 1 cut(s) 81
TaqI TCGA 2 cut(s) 212, 257
TaqII GACCGA 1 cut(s) 72
TasI AATT 2 cut(s) 20, 298
TatI WGTACW 1 cut(s) 261
TauI GCSGC 4 cut(s) 46, 110, 129, 228
Tru1I TTAA 1 cut(s) 68
Tru9I TTAA 1 cut(s) 68
TscAI CASTG 1 cut(s) 43
TseI GCWGC 1 cut(s) 6
TspDTI ATGAA 1 cut(s) 86
TspGWI ACGGA 1 cut(s) 280
TspRI CASTG 1 cut(s) 43
Tth111I GACNNNGTC 1 cut(s) 80
VpaK11BI GGWCC 1 cut(s) 55
XspI CTAG 1 cut(s) 144
ZraI GACGTC 1 cut(s) 79
ZrmI AGTACT 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.