Rroxscaffold_7G00200410

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0007560
Physical Location & Seq
Reverse (-)
47829655 .. 47830948
1294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00200410.1

Sequence Viewer

Length: 372 bp
ATGGAGATCGTGGGCACAAGGTTGGGGTTTGGAAGGGATTCAGTTCTCCACCGGATCTCTTCTAAATCTCATGGCGGCGGCGTGGAGGTAGGGGGCGGCTTAGGGTGCTACAACTTTGCATTAGGTGGGATTTGGTTTCGTGTTGGTACGTCGGGTCTCGCTCAGACCTTTTGGATCATCGTTAAGGTGGTGAAACGCTGGGATGTGCTTGGATGGGTGGTGGTGGTCGTGACAGGGGTGGAGGTCGCATTTTGCAGCTATGCACAGATCTGCCCTAGCGGAGGAGATGGTGTCTGGGCCTGGCATAGGCTTTTCCTGTTTGGACCTTGGGCTGGCTCTTTCTTTTTGGGCTCCAAGTTTTTGCTTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

13.31

Weight (kDa)

9.3

Isoelectric Point (pI)

23.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 75, 78, 96, 279
AclWI GGATC 2 cut(s) 62, 182
AfaI GTAC 1 cut(s) 148
AfiI CCNNNNNNNGG 3 cut(s) 281, 306, 332
AjnI CCWGG 1 cut(s) 299
AluBI AGCT 1 cut(s) 258
AluI AGCT 1 cut(s) 258
Alw26I GTCTC 1 cut(s) 161
AlwI GGATC 2 cut(s) 62, 182
AoxI GGCC 1 cut(s) 297
ApeKI GCWGC 1 cut(s) 255
Asp700I GAANNNNTTC 1 cut(s) 37
AspS9I GGNCC 2 cut(s) 297, 323
AsuHPI GGTGA 1 cut(s) 202
AvaII GGWCC 1 cut(s) 323
BaeGI GKGCMC 1 cut(s) 17
BanII GRGCYC 1 cut(s) 353
BbvI GCAGC 1 cut(s) 267
BccI CCATC 2 cut(s) 207, 281
BciT130I CCWGG 1 cut(s) 301
BcoDI GTCTC 1 cut(s) 161
BfaI CTAG 1 cut(s) 276
BglII AGATCT 1 cut(s) 267
BisI GCNGC 4 cut(s) 76, 79, 97, 256
BlsI GCNGC 4 cut(s) 77, 80, 98, 257
Bme1390I CCNGG 1 cut(s) 301
Bme18I GGWCC 1 cut(s) 323
BmgT120I GGNCC 2 cut(s) 297, 323
BmiI GGNNCC 1 cut(s) 352
BmrFI CCNGG 1 cut(s) 301
Bpu10I CCTNAGC 1 cut(s) 100
BsaI GGTCTC 1 cut(s) 161
BsaJI CCNNGG 1 cut(s) 326
BsaWI WCCGGW 1 cut(s) 51
BsaXI ACNNNNNCTCC 2 cut(s) 276, 306
Bsc4I CCNNNNNNNGG 3 cut(s) 281, 306, 332
BseBI CCWGG 1 cut(s) 301
BseDI CCNNGG 1 cut(s) 326
BseGI GGATG 2 cut(s) 208, 218
BseLI CCNNNNNNNGG 3 cut(s) 281, 306, 332
BseMII CTCAG 1 cut(s) 176
BseRI GAGGAG 1 cut(s) 297
BseSI GKGCMC 1 cut(s) 17
BseXI GCAGC 1 cut(s) 267
BseYI CCCAGC 1 cut(s) 198
BshFI GGCC 1 cut(s) 299
BsiSI CCGG 1 cut(s) 52
BslI CCNNNNNNNGG 3 cut(s) 281, 306, 332
BsmAI GTCTC 1 cut(s) 161
BsnI GGCC 1 cut(s) 299
Bso31I GGTCTC 1 cut(s) 161
Bsp1286I GDGCHC 2 cut(s) 17, 353
Bsp143I GATC 4 cut(s) 6, 54, 174, 267
BspACI CCGC 4 cut(s) 75, 78, 96, 279
BspANI GGCC 1 cut(s) 299
BspCNI CTCAG 1 cut(s) 175
BspLI GGNNCC 1 cut(s) 352
BspPI GGATC 2 cut(s) 62, 182
BspTNI GGTCTC 1 cut(s) 161
BssECI CCNNGG 1 cut(s) 326
BssMI GATC 4 cut(s) 6, 54, 174, 267
BssT1I CCWWGG 1 cut(s) 326
Bst2UI CCWGG 1 cut(s) 301
Bst6I CTCTTC 1 cut(s) 64
BstC8I GCNNGC 1 cut(s) 334
BstDEI CTNAG 2 cut(s) 100, 162
BstENI CCTNNNNNAGG 2 cut(s) 279, 304
BstF5I GGATG 2 cut(s) 208, 218
BstKTI GATC 4 cut(s) 9, 57, 177, 270
BstMAI GTCTC 1 cut(s) 161
BstMBI GATC 4 cut(s) 6, 54, 174, 267
BstMWI GCNNNNNNNGC 1 cut(s) 105
BstNI CCWGG 1 cut(s) 301
BstSCI CCNGG 1 cut(s) 299
BstSLI GKGCMC 1 cut(s) 17
BstV1I GCAGC 1 cut(s) 267
BstX2I RGATCY 2 cut(s) 54, 267
BstYI RGATCY 2 cut(s) 54, 267
BsuRI GGCC 1 cut(s) 299
BtsCI GGATG 2 cut(s) 208, 218
Cac8I GCNNGC 1 cut(s) 334
Cfr13I GGNCC 2 cut(s) 297, 323
Csp6I GTAC 1 cut(s) 147
CviAII CATG 1 cut(s) 71
CviJI RGCY 7 cut(s) 99, 258, 299, 310, 332, 336, 351
CviKI_1 RGCY 7 cut(s) 99, 258, 299, 310, 332, 336, 351
CviQI GTAC 1 cut(s) 147
DdeI CTNAG 2 cut(s) 100, 162
DpnI GATC 4 cut(s) 8, 56, 176, 269
DpnII GATC 4 cut(s) 6, 54, 174, 267
Eam1104I CTCTTC 1 cut(s) 64
EarI CTCTTC 1 cut(s) 64
Eco130I CCWWGG 1 cut(s) 326
Eco24I GRGCYC 1 cut(s) 353
Eco31I GGTCTC 1 cut(s) 161
Eco47I GGWCC 1 cut(s) 323
EcoNI CCTNNNNNAGG 2 cut(s) 279, 304
EcoRII CCWGG 1 cut(s) 299
EcoT14I CCWWGG 1 cut(s) 326
EcoT38I GRGCYC 1 cut(s) 353
ErhI CCWWGG 1 cut(s) 326
FaeI CATG 1 cut(s) 74
FaiI YATR 4 cut(s) 72, 261, 306, 370
FatI CATG 1 cut(s) 70
Fnu4HI GCNGC 4 cut(s) 76, 79, 97, 256
FokI GGATG 2 cut(s) 215, 225
FriOI GRGCYC 1 cut(s) 353
Fsp4HI GCNGC 4 cut(s) 76, 79, 97, 256
FspBI CTAG 1 cut(s) 276
GluI GCNGC 4 cut(s) 76, 79, 97, 256
GsaI CCCAGC 1 cut(s) 202
HaeIII GGCC 1 cut(s) 299
HapII CCGG 1 cut(s) 52
Hin1II CATG 1 cut(s) 74
HinfI GANTC 1 cut(s) 38
HpaII CCGG 1 cut(s) 52
HphI GGTGA 1 cut(s) 202
Hpy188I TCNGA 1 cut(s) 165
Hpy188III TCNNGA 1 cut(s) 229
Hpy99I CGWCG 1 cut(s) 154
HpyAV CCTTC 1 cut(s) 27
HpyCH4IV ACGT 1 cut(s) 149
HpyCH4V TGCA 3 cut(s) 119, 255, 263
HpyF10VI GCNNNNNNNGC 1 cut(s) 105
HpyF3I CTNAG 2 cut(s) 100, 162
HpySE526I ACGT 1 cut(s) 149
Hsp92II CATG 1 cut(s) 74
Kzo9I GATC 4 cut(s) 6, 54, 174, 267
LmnI GCTCC 1 cut(s) 356
LpnPI CCDG 8 cut(s) 65, 184, 219, 280, 286, 313, 318, 329
Lsp1109I GCAGC 1 cut(s) 267
MaeI CTAG 1 cut(s) 276
MaeII ACGT 1 cut(s) 149
MaeIII GTNAC 1 cut(s) 229
MalI GATC 4 cut(s) 8, 56, 176, 269
MboI GATC 4 cut(s) 6, 54, 174, 267
MboII GAAGA 1 cut(s) 51
MflI RGATCY 2 cut(s) 54, 267
MhlI GDGCHC 2 cut(s) 17, 353
MnlI CCTC 3 cut(s) 79, 235, 275
MroXI GAANNNNTTC 1 cut(s) 37
MseI TTAA 1 cut(s) 183
MspI CCGG 1 cut(s) 52
MspR9I CCNGG 1 cut(s) 301
MvaI CCWGG 1 cut(s) 301
MwoI GCNNNNNNNGC 1 cut(s) 105
NdeII GATC 4 cut(s) 6, 54, 174, 267
NlaIII CATG 1 cut(s) 74
NlaIV GGNNCC 1 cut(s) 352
NmuCI GTSAC 1 cut(s) 229
PdmI GAANNNNTTC 1 cut(s) 37
PfeI GAWTC 1 cut(s) 38
PkrI GCNGC 4 cut(s) 77, 80, 98, 257
Psp6I CCWGG 1 cut(s) 299
PspFI CCCAGC 1 cut(s) 198
PspGI CCWGG 1 cut(s) 299
PspN4I GGNNCC 1 cut(s) 352
PspPI GGNCC 2 cut(s) 297, 323
PsuI RGATCY 2 cut(s) 54, 267
RsaI GTAC 1 cut(s) 148
RsaNI GTAC 1 cut(s) 147
SaqAI TTAA 1 cut(s) 183
SatI GCNGC 4 cut(s) 76, 79, 97, 256
Sau3AI GATC 4 cut(s) 6, 54, 174, 267
Sau96I GGNCC 2 cut(s) 297, 323
ScrFI CCNGG 1 cut(s) 301
SduI GDGCHC 2 cut(s) 17, 353
SetI ASST 9 cut(s) 23, 90, 127, 152, 170, 189, 246, 260, 328
SinI GGWCC 1 cut(s) 323
SsiI CCGC 4 cut(s) 75, 78, 96, 279
SspMI CTAG 1 cut(s) 276
StyD4I CCNGG 1 cut(s) 299
StyI CCWWGG 1 cut(s) 326
TaiI ACGT 1 cut(s) 152
TauI GCSGC 3 cut(s) 78, 81, 99
TfiI GAWTC 1 cut(s) 38
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
TseFI GTSAC 1 cut(s) 229
TseI GCWGC 1 cut(s) 255
Tsp45I GTSAC 1 cut(s) 229
VpaK11BI GGWCC 1 cut(s) 323
XagI CCTNNNNNAGG 2 cut(s) 279, 304
XmnI GAANNNNTTC 1 cut(s) 37
XspI CTAG 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.