Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0007560

Physical Location & Seq

Genomic Coordinates Forward (+)

57826771 .. 57827522

Gene Structure 752 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014809

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGAGCAATATCAGAGATGAAGTTCTGAGCCTCAAAATCGGATTGAGGTCAGCCGTTGACAACACCGATCCGGAAACTGAAACCGAGACATCGGAGTACAATTACTTCCACAACATACCAAAATCCCAACCTGCCGCCCACATAAACCTCTCATATTCTCACTCGAAGAAGTACGCCCAGTCCGAAACTGAGAGATCAGAGTACGATTTCTTCGTCCCCAACCGTAACCCTAAAGCTCCGACCAAGGCTCAGTTGGAAAAGTATGCTCAGTCGAAGAGAGAAGAGAGATCTGAGACGGGGACCCGATCCAATTTCGACCCGTCGGTTCAGGCCGAGTCGGTTGCGGGCTCAGTGCTGCCAGCCCAGATGATGCCGAAGTATGCGTCGAGCATGAGGTCTGAGGGGTTAGAAGGGAGTACTTACCGGAGCAATGAAATCTCGAACATGAAAATGGTGGTGAGGCATAAAGAGTTGAAAGAGATTGTGGAGGAGATTAAGAAGAATTTTTATAAGGCCGCGATGGCCGGAGACCAAGTTTTCGAGCTGCTCGAGTCCAACCGGGCCCAGCTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0009987 GO:0010035 GO:0010167 GO:0015698 GO:0015706 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0070887 GO:0071229 GO:0071241 GO:0071249 GO:0071705 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF630 DUF632

Protein Analysis

192

Amino Acids

21.74

Weight (kDa)

5.9

Isoelectric Point (pI)

73.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007560)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000006991 RLG00000009793 RLG00000011857 RLG00000013125 RLG00000013975 RLG00000014809 RLG00000017041 RLG00000018430 RLG00000018921 RLG00000019889 RLG00000023155 RLG00000027020 RLG00000029579 RLG00000034055 RLG00000035664 RLG00000035941
rosa_multiflora	Rmu_sc0003379.1_g000011
rosa_roxburghii	Rroxscaffold_7G00200410
rosa_samantha	Rh1BG224300 Rh1BG224400 Rh1DG251900 Rh4DG089100 Rh7AG481800 Rh7BG089600 Rh7BG089700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	510
Acc36I	ACCTGC	1 cut(s)	139
AccII	CGCG	1 cut(s)	518
AccIII	TCCGGA	1 cut(s)	70
AciI	CCGC	3 cut(s)	135, 344, 516
AclWI	GGATC	2 cut(s)	62, 300
AcoI	YGGCCR	1 cut(s)	522
AcsI	RAATTY	1 cut(s)	502
AfaI	GTAC	4 cut(s)	98, 173, 203, 418
AgsI	TTSAA	1 cut(s)	475
AluBI	AGCT	3 cut(s)	236, 544, 568
AluI	AGCT	3 cut(s)	236, 544, 568
Alw26I	GTCTC	3 cut(s)	80, 287, 522
AlwI	GGATC	2 cut(s)	62, 300
Ama87I	CYCGRG	1 cut(s)	548
Aor13HI	TCCGGA	1 cut(s)	70
AoxI	GGCC	4 cut(s)	330, 513, 522, 561
ApaI	GGGCCC	1 cut(s)	565
ApeKI	GCWGC	2 cut(s)	355, 544
ApoI	RAATTY	1 cut(s)	502
ArsI	GACNNNNNNTTYG	4 cut(s)	368, 400, 521, 553
AspS9I	GGNCC	3 cut(s)	300, 561, 562
AsuC2I	CCSGG	1 cut(s)	560
AsuHPI	GGTGA	1 cut(s)	469
AvaI	CYCGRG	1 cut(s)	548
AvaII	GGWCC	1 cut(s)	300
BaeGI	GKGCMC	1 cut(s)	565
BanII	GRGCYC	2 cut(s)	350, 565
BarI	GAAGNNNNNNTAC	4 cut(s)	89, 121, 194, 226
BbvI	GCAGC	2 cut(s)	342, 531
BccI	CCATC	1 cut(s)	514
BceAI	ACGGC	1 cut(s)	38
BcgI	CGANNNNNNTGC	2 cut(s)	323, 357
BcnI	CCSGG	1 cut(s)	560
BcoDI	GTCTC	3 cut(s)	80, 287, 522
BfuAI	ACCTGC	1 cut(s)	139
BglI	GCCNNNNNGGC	1 cut(s)	521
BglII	AGATCT	1 cut(s)	287
BisI	GCNGC	4 cut(s)	135, 356, 516, 545
BlsI	GCNGC	4 cut(s)	136, 357, 517, 546
BmcAI	AGTACT	1 cut(s)	418
Bme1390I	CCNGG	1 cut(s)	560
Bme18I	GGWCC	1 cut(s)	300
BmeT110I	CYCGRG	1 cut(s)	548
BmgT120I	GGNCC	3 cut(s)	300, 561, 562
BmiI	GGNNCC	3 cut(s)	301, 302, 563
BmrFI	CCNGG	1 cut(s)	560
BmrI	ACTGGG	1 cut(s)	172
BmsI	GCATC	1 cut(s)	360
BmuI	ACTGGG	1 cut(s)	172
BpuMI	CCSGG	1 cut(s)	560
BsaI	GGTCTC	1 cut(s)	522
BsaJI	CCNNGG	1 cut(s)	243
BsaWI	WCCGGW	2 cut(s)	70, 423
BsaXI	ACNNNNNCTCC	2 cut(s)	519, 549
Bse1I	ACTGG	1 cut(s)	178
Bse3DI	GCAATG	1 cut(s)	436
BseAI	TCCGGA	1 cut(s)	70
BseDI	CCNNGG	1 cut(s)	243
BseMI	GCAATG	1 cut(s)	436
BseMII	CTCAG	7 cut(s)	17, 180, 263, 281, 282, 363, 390
BseNI	ACTGG	1 cut(s)	178
BseRI	GAGGAG	1 cut(s)	503
BseSI	GKGCMC	1 cut(s)	565
BseXI	GCAGC	2 cut(s)	342, 531
BseYI	CCCAGC	1 cut(s)	564
Bsh1236I	CGCG	1 cut(s)	518
BshFI	GGCC	4 cut(s)	332, 515, 524, 563
BsiHKCI	CYCGRG	1 cut(s)	548
BsiSI	CCGG	4 cut(s)	71, 424, 525, 559
BslFI	GGGAC	2 cut(s)	200, 313
BsmAI	GTCTC	3 cut(s)	80, 287, 522
BsmBI	CGTCTC	1 cut(s)	287
BsmFI	GGGAC	2 cut(s)	200, 313
BsnI	GGCC	4 cut(s)	332, 515, 524, 563
Bso31I	GGTCTC	1 cut(s)	522
BsoBI	CYCGRG	1 cut(s)	548
Bsp120I	GGGCCC	1 cut(s)	561
Bsp1286I	GDGCHC	2 cut(s)	350, 565
Bsp13I	TCCGGA	1 cut(s)	70
Bsp143I	GATC	4 cut(s)	67, 194, 287, 305
BspACI	CCGC	3 cut(s)	135, 344, 516
BspANI	GGCC	4 cut(s)	332, 515, 524, 563
BspCNI	CTCAG	7 cut(s)	18, 181, 262, 280, 283, 362, 391
BspEI	TCCGGA	1 cut(s)	70
BspFNI	CGCG	1 cut(s)	518
BspLI	GGNNCC	3 cut(s)	301, 302, 563
BspMI	ACCTGC	1 cut(s)	139
BspPI	GGATC	2 cut(s)	62, 300
BspTNI	GGTCTC	1 cut(s)	522
BsrDI	GCAATG	1 cut(s)	436
BsrI	ACTGG	1 cut(s)	178
BssECI	CCNNGG	1 cut(s)	243
BssMI	GATC	4 cut(s)	67, 194, 287, 305
BssT1I	CCWWGG	1 cut(s)	243
Bst4CI	ACNGT	1 cut(s)	224
Bst6I	CTCTTC	2 cut(s)	269, 276
BstC8I	GCNNGC	2 cut(s)	346, 360
BstDEI	CTNAG	7 cut(s)	26, 189, 249, 267, 291, 349, 399
BstFNI	CGCG	1 cut(s)	518
BstKTI	GATC	4 cut(s)	70, 197, 290, 308
BstMAI	GTCTC	3 cut(s)	80, 287, 522
BstMBI	GATC	4 cut(s)	67, 194, 287, 305
BstMWI	GCNNNNNNNGC	1 cut(s)	521
BstSCI	CCNGG	1 cut(s)	558
BstSLI	GKGCMC	1 cut(s)	565
BstUI	CGCG	1 cut(s)	518
BstV1I	GCAGC	2 cut(s)	342, 531
BstX2I	RGATCY	1 cut(s)	287
BstYI	RGATCY	1 cut(s)	287
BsuRI	GGCC	4 cut(s)	332, 515, 524, 563
BtgZI	GCGATG	1 cut(s)	533
BtsIMutI	CAGTG	1 cut(s)	357
BveI	ACCTGC	1 cut(s)	139
Cac8I	GCNNGC	2 cut(s)	346, 360
Cfr13I	GGNCC	3 cut(s)	300, 561, 562
CseI	GACGC	1 cut(s)	372
Csp6I	GTAC	4 cut(s)	97, 172, 202, 417
CviAII	CATG	2 cut(s)	391, 445
CviQI	GTAC	4 cut(s)	97, 172, 202, 417
DdeI	CTNAG	7 cut(s)	26, 189, 249, 267, 291, 349, 399
DpnI	GATC	4 cut(s)	69, 196, 289, 307
DpnII	GATC	4 cut(s)	67, 194, 287, 305
EaeI	YGGCCR	1 cut(s)	522
Eam1104I	CTCTTC	2 cut(s)	269, 276
EarI	CTCTTC	2 cut(s)	269, 276
Eco130I	CCWWGG	1 cut(s)	243
Eco24I	GRGCYC	2 cut(s)	350, 565
Eco31I	GGTCTC	1 cut(s)	522
Eco47I	GGWCC	1 cut(s)	300
Eco88I	CYCGRG	1 cut(s)	548
EcoO109I	RGGNCCY	1 cut(s)	300
EcoT14I	CCWWGG	1 cut(s)	243
EcoT38I	GRGCYC	2 cut(s)	350, 565
ErhI	CCWWGG	1 cut(s)	243
Esp3I	CGTCTC	1 cut(s)	287
FaeI	CATG	2 cut(s)	394, 448
FaiI	YATR	9 cut(s)	116, 143, 154, 264, 381, 392, 446, 465, 510
FaqI	GGGAC	2 cut(s)	200, 313
FatI	CATG	2 cut(s)	390, 444
FauI	CCCGC	1 cut(s)	337
Fnu4HI	GCNGC	4 cut(s)	135, 356, 516, 545
FriOI	GRGCYC	2 cut(s)	350, 565
Fsp4HI	GCNGC	4 cut(s)	135, 356, 516, 545
GluI	GCNGC	4 cut(s)	135, 356, 516, 545
GsaI	CCCAGC	1 cut(s)	568
HaeIII	GGCC	4 cut(s)	332, 515, 524, 563
HapII	CCGG	4 cut(s)	71, 424, 525, 559
HgaI	GACGC	1 cut(s)	372
Hin1II	CATG	2 cut(s)	394, 448
HincII	GTYRAC	1 cut(s)	58
HindII	GTYRAC	1 cut(s)	58
HinfI	GANTC	2 cut(s)	335, 551
HpaII	CCGG	4 cut(s)	71, 424, 525, 559
HphI	GGTGA	1 cut(s)	469
Hpy166II	GTNNAC	1 cut(s)	58
Hpy188I	TCNGA	9 cut(s)	14, 27, 41, 94, 184, 199, 240, 292, 400
Hpy188III	TCNNGA	2 cut(s)	71, 439
Hpy8I	GTNNAC	1 cut(s)	58
Hpy99I	CGWCG	2 cut(s)	325, 388
HpyAV	CCTTC	1 cut(s)	404
HpyCH4III	ACNGT	1 cut(s)	224
HpyF10VI	GCNNNNNNNGC	1 cut(s)	521
HpyF3I	CTNAG	7 cut(s)	26, 189, 249, 267, 291, 349, 399
Hsp92II	CATG	2 cut(s)	394, 448
KflI	GGGWCCC	1 cut(s)	300
Kpn2I	TCCGGA	1 cut(s)	70
Kzo9I	GATC	4 cut(s)	67, 194, 287, 305
LmnI	GCTCC	2 cut(s)	241, 426
LpnPI	CCDG	9 cut(s)	84, 144, 191, 314, 372, 377, 437, 538, 572
Lsp1109I	GCAGC	2 cut(s)	342, 531
LweI	GCATC	1 cut(s)	360
MaeIII	GTNAC	1 cut(s)	224
MalI	GATC	4 cut(s)	69, 196, 289, 307
MboI	GATC	4 cut(s)	67, 194, 287, 305
MboII	GAAGA	5 cut(s)	178, 202, 286, 293, 511
MflI	RGATCY	1 cut(s)	287
MhlI	GDGCHC	2 cut(s)	350, 565
MluCI	AATT	3 cut(s)	100, 310, 502
MlyI	GAGTC	2 cut(s)	344, 560
MmeI	TCCRAC	2 cut(s)	234, 263
MnlI	CCTC	7 cut(s)	39, 41, 158, 387, 394, 453, 481
MroI	TCCGGA	1 cut(s)	70
MseI	TTAA	1 cut(s)	495
MslI	CAYNNNNRTG	1 cut(s)	449
MspI	CCGG	4 cut(s)	71, 424, 525, 559
MspR9I	CCNGG	1 cut(s)	560
MvnI	CGCG	1 cut(s)	518
MwoI	GCNNNNNNNGC	1 cut(s)	521
NciI	CCSGG	1 cut(s)	560
NdeII	GATC	4 cut(s)	67, 194, 287, 305
NlaIII	CATG	2 cut(s)	394, 448
NlaIV	GGNNCC	3 cut(s)	301, 302, 563
NmeAIII	GCCGAG	1 cut(s)	358
PaeR7I	CTCGAG	1 cut(s)	548
PcsI	WCGNNNNNNNCGW	3 cut(s)	180, 210, 546
PkrI	GCNGC	4 cut(s)	136, 357, 517, 546
PleI	GAGTC	2 cut(s)	343, 559
PpsI	GAGTC	2 cut(s)	343, 559
PpuMI	RGGWCCY	1 cut(s)	300
PsiI	TTATAA	1 cut(s)	510
Psp5II	RGGWCCY	1 cut(s)	300
PspFI	CCCAGC	1 cut(s)	564
PspN4I	GGNNCC	3 cut(s)	301, 302, 563
PspOMI	GGGCCC	1 cut(s)	561
PspPI	GGNCC	3 cut(s)	300, 561, 562
PspPPI	RGGWCCY	1 cut(s)	300
PspXI	VCTCGAGB	1 cut(s)	548
PsuI	RGATCY	1 cut(s)	287
RsaI	GTAC	4 cut(s)	98, 173, 203, 418
RsaNI	GTAC	4 cut(s)	97, 172, 202, 417
RseI	CAYNNNNRTG	1 cut(s)	449
SaqAI	TTAA	1 cut(s)	495
SatI	GCNGC	4 cut(s)	135, 356, 516, 545
Sau3AI	GATC	4 cut(s)	67, 194, 287, 305
Sau96I	GGNCC	3 cut(s)	300, 561, 562
ScaI	AGTACT	1 cut(s)	418
SchI	GAGTC	2 cut(s)	344, 560
ScrFI	CCNGG	1 cut(s)	560
SduI	GDGCHC	2 cut(s)	350, 565
SetI	ASST	7 cut(s)	50, 133, 150, 238, 398, 546, 570
SfaNI	GCATC	1 cut(s)	360
SfiI	GGCCNNNNNGGCC	1 cut(s)	521
Sfr274I	CTCGAG	1 cut(s)	548
SinI	GGWCC	1 cut(s)	300
SlaI	CTCGAG	1 cut(s)	548
SmiMI	CAYNNNNRTG	1 cut(s)	449
SmlI	CTYRAG	1 cut(s)	548
SmoI	CTYRAG	1 cut(s)	548
Sse9I	AATT	3 cut(s)	100, 310, 502
SsiI	CCGC	3 cut(s)	135, 344, 516
StyD4I	CCNGG	1 cut(s)	558
StyI	CCWWGG	1 cut(s)	243
TaaI	ACNGT	1 cut(s)	224
TaqI	TCGA	7 cut(s)	164, 272, 315, 386, 440, 540, 549
TasI	AATT	3 cut(s)	100, 310, 502
TatI	WGTACW	2 cut(s)	96, 416
TauI	GCSGC	2 cut(s)	137, 518
Tru1I	TTAA	1 cut(s)	495
Tru9I	TTAA	1 cut(s)	495
TscAI	CASTG	1 cut(s)	357
TseI	GCWGC	2 cut(s)	355, 544
TspDTI	ATGAA	3 cut(s)	33, 447, 461
TspRI	CASTG	1 cut(s)	357
VpaK11BI	GGWCC	1 cut(s)	300
XapI	RAATTY	1 cut(s)	502
XcmI	CCANNNNNNNNNTGG	1 cut(s)	250
XhoI	CTCGAG	1 cut(s)	548
ZrmI	AGTACT	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.