Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0007560

Physical Location & Seq

Genomic Coordinates Reverse (-)

44969557 .. 44971763

Gene Structure 2207 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013975

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGTCCTCAAACGGTCTTCTCACTGCACAGTATGGAGATCTAAACAAGCAATTGTTCGTTTCGCATTTCCACAAGTTTTCGCTTTTGCTTTTGGAATTACTACAGAGAAACTAAAACTTTCAGAGGAGGTCGGAGGCCAGCGTTGGGTTCTAGCTCGCAGCTCTGAGGCTATGGAGATCGTGGGCACAGGGTTGGGGTTTGGAAGGGATTCAGTTCTCCACCGGATCTCTTCTAAATCTCATGGCGGCGACGTGGAGGTAGGGGGCGGCTTAGGGTGTTGCGACTCTGCATCAGGTGGGATTTGGTTTCGTGTTGGTACGTCGGGTCTCGCTCAGACCTTTTGGATCGTCGTTAAGGTGGTGAAACGCTGGGATGTGCTTGGATGGGTGGTGGTGGTTGTGGCAGGGGTGGTGGTTGTGGCAGGGGTGGAGGTCGCATTTTGCAGCTATGCACAGATCTACCCTAGCGGAGGAGATGGTGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

162

Amino Acids

17.15

Weight (kDa)

9.04

Isoelectric Point (pI)

47.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007560)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000006991 RLG00000009793 RLG00000011857 RLG00000013125 RLG00000013975 RLG00000014809 RLG00000017041 RLG00000018430 RLG00000018921 RLG00000019889 RLG00000023155 RLG00000027020 RLG00000029579 RLG00000034055 RLG00000035664 RLG00000035941
rosa_multiflora	Rmu_sc0003379.1_g000011
rosa_roxburghii	Rroxscaffold_7G00200410
rosa_samantha	Rh1BG224300 Rh1BG224400 Rh1DG251900 Rh4DG089100 Rh7AG481800 Rh7BG089600 Rh7BG089700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	246, 267, 468
AclWI	GGATC	2 cut(s)	233, 353
AfaI	GTAC	1 cut(s)	319
AfiI	CCNNNNNNNGG	2 cut(s)	145, 470
AjiI	CACGTC	1 cut(s)	253
AluBI	AGCT	3 cut(s)	155, 162, 447
AluI	AGCT	3 cut(s)	155, 162, 447
Alw26I	GTCTC	1 cut(s)	332
AlwI	GGATC	2 cut(s)	233, 353
AoxI	GGCC	1 cut(s)	136
ApeKI	GCWGC	2 cut(s)	159, 444
Asp700I	GAANNNNTTC	1 cut(s)	208
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	373
AvaII	GGWCC	1 cut(s)	4
BaeGI	GKGCMC	1 cut(s)	188
BbsI	GAAGAC	1 cut(s)	9
BbvI	GCAGC	2 cut(s)	171, 456
BccI	CCATC	2 cut(s)	378, 470
BcoDI	GTCTC	1 cut(s)	332
BfaI	CTAG	3 cut(s)	152, 465, 484
BfmI	CTRYAG	1 cut(s)	102
BglII	AGATCT	2 cut(s)	38, 456
BisI	GCNGC	4 cut(s)	160, 247, 268, 445
BlsI	GCNGC	4 cut(s)	161, 248, 269, 446
Bme18I	GGWCC	1 cut(s)	4
BmgBI	CACGTC	1 cut(s)	253
BmgT120I	GGNCC	1 cut(s)	4
BmsI	GCATC	1 cut(s)	299
BpiI	GAAGAC	1 cut(s)	9
Bpu10I	CCTNAGC	1 cut(s)	271
BsaI	GGTCTC	1 cut(s)	332
BsaWI	WCCGGW	1 cut(s)	222
BsaXI	ACNNNNNCTCC	1 cut(s)	465
Bsc4I	CCNNNNNNNGG	2 cut(s)	145, 470
BseGI	GGATG	2 cut(s)	379, 389
BseLI	CCNNNNNNNGG	2 cut(s)	145, 470
BseMII	CTCAG	2 cut(s)	156, 347
BseRI	GAGGAG	2 cut(s)	140, 486
BseSI	GKGCMC	1 cut(s)	188
BseXI	GCAGC	2 cut(s)	171, 456
BseYI	CCCAGC	1 cut(s)	369
BsgI	GTGCAG	1 cut(s)	10
BshFI	GGCC	1 cut(s)	138
BsiSI	CCGG	1 cut(s)	223
BslI	CCNNNNNNNGG	2 cut(s)	145, 470
BsmAI	GTCTC	1 cut(s)	332
BsnI	GGCC	1 cut(s)	138
Bso31I	GGTCTC	1 cut(s)	332
Bsp1286I	GDGCHC	1 cut(s)	188
Bsp143I	GATC	5 cut(s)	38, 177, 225, 345, 456
BspACI	CCGC	3 cut(s)	246, 267, 468
BspANI	GGCC	1 cut(s)	138
BspCNI	CTCAG	2 cut(s)	157, 346
BspPI	GGATC	2 cut(s)	233, 353
BspTNI	GGTCTC	1 cut(s)	332
BssMI	GATC	5 cut(s)	38, 177, 225, 345, 456
Bst4CI	ACNGT	2 cut(s)	15, 31
Bst6I	CTCTTC	1 cut(s)	235
BstC8I	GCNNGC	2 cut(s)	140, 157
BstDEI	CTNAG	3 cut(s)	165, 271, 333
BstENI	CCTNNNNNAGG	1 cut(s)	468
BstF5I	GGATG	2 cut(s)	379, 389
BstKTI	GATC	5 cut(s)	41, 180, 228, 348, 459
BstMAI	GTCTC	1 cut(s)	332
BstMBI	GATC	5 cut(s)	38, 177, 225, 345, 456
BstSFI	CTRYAG	1 cut(s)	102
BstSLI	GKGCMC	1 cut(s)	188
BstV1I	GCAGC	2 cut(s)	171, 456
BstV2I	GAAGAC	1 cut(s)	9
BstX2I	RGATCY	3 cut(s)	38, 225, 456
BstYI	RGATCY	3 cut(s)	38, 225, 456
BsuRI	GGCC	1 cut(s)	138
BtrI	CACGTC	1 cut(s)	253
BtsCI	GGATG	2 cut(s)	379, 389
BtsI	GCAGTG	1 cut(s)	22
BtsIMutI	CAGTG	1 cut(s)	22
Cac8I	GCNNGC	2 cut(s)	140, 157
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	1 cut(s)	318
CviAII	CATG	1 cut(s)	242
CviJI	RGCY	6 cut(s)	138, 155, 162, 170, 270, 447
CviKI_1	RGCY	6 cut(s)	138, 155, 162, 170, 270, 447
CviQI	GTAC	1 cut(s)	318
DdeI	CTNAG	3 cut(s)	165, 271, 333
DpnI	GATC	5 cut(s)	40, 179, 227, 347, 458
DpnII	GATC	5 cut(s)	38, 177, 225, 345, 456
Eam1104I	CTCTTC	1 cut(s)	235
EarI	CTCTTC	1 cut(s)	235
Eco31I	GGTCTC	1 cut(s)	332
Eco47I	GGWCC	1 cut(s)	4
EcoNI	CCTNNNNNAGG	1 cut(s)	468
FaeI	CATG	1 cut(s)	245
FaiI	YATR	4 cut(s)	34, 173, 243, 450
FatI	CATG	1 cut(s)	241
Fnu4HI	GCNGC	4 cut(s)	160, 247, 268, 445
FokI	GGATG	2 cut(s)	386, 396
Fsp4HI	GCNGC	4 cut(s)	160, 247, 268, 445
FspBI	CTAG	3 cut(s)	152, 465, 484
GluI	GCNGC	4 cut(s)	160, 247, 268, 445
GsaI	CCCAGC	1 cut(s)	373
HaeIII	GGCC	1 cut(s)	138
HapII	CCGG	1 cut(s)	223
Hin1II	CATG	1 cut(s)	245
HinfI	GANTC	2 cut(s)	209, 284
HpaII	CCGG	1 cut(s)	223
HphI	GGTGA	1 cut(s)	373
Hpy188I	TCNGA	4 cut(s)	124, 134, 166, 336
Hpy99I	CGWCG	3 cut(s)	254, 325, 353
HpyAV	CCTTC	1 cut(s)	198
HpyCH4III	ACNGT	2 cut(s)	15, 31
HpyCH4IV	ACGT	2 cut(s)	252, 320
HpyCH4V	TGCA	4 cut(s)	27, 290, 444, 452
HpyF3I	CTNAG	3 cut(s)	165, 271, 333
HpySE526I	ACGT	2 cut(s)	252, 320
Hsp92II	CATG	1 cut(s)	245
Kzo9I	GATC	5 cut(s)	38, 177, 225, 345, 456
LpnPI	CCDG	7 cut(s)	152, 174, 236, 279, 355, 390, 408
Lsp1109I	GCAGC	2 cut(s)	171, 456
LweI	GCATC	1 cut(s)	299
MaeI	CTAG	3 cut(s)	152, 465, 484
MaeII	ACGT	2 cut(s)	252, 320
MalI	GATC	5 cut(s)	40, 179, 227, 347, 458
MboI	GATC	5 cut(s)	38, 177, 225, 345, 456
MboII	GAAGA	2 cut(s)	9, 222
MfeI	CAATTG	1 cut(s)	51
MflI	RGATCY	3 cut(s)	38, 225, 456
MhlI	GDGCHC	1 cut(s)	188
MluCI	AATT	2 cut(s)	51, 96
MlyI	GAGTC	1 cut(s)	278
MmeI	TCCRAC	1 cut(s)	112
MnlI	CCTC	8 cut(s)	17, 118, 121, 128, 160, 250, 424, 464
MroXI	GAANNNNTTC	1 cut(s)	208
MseI	TTAA	1 cut(s)	354
MspI	CCGG	1 cut(s)	223
MunI	CAATTG	1 cut(s)	51
NdeII	GATC	5 cut(s)	38, 177, 225, 345, 456
NlaIII	CATG	1 cut(s)	245
PdmI	GAANNNNTTC	1 cut(s)	208
PfeI	GAWTC	1 cut(s)	209
PkrI	GCNGC	4 cut(s)	161, 248, 269, 446
PleI	GAGTC	1 cut(s)	278
PpsI	GAGTC	1 cut(s)	278
PspFI	CCCAGC	1 cut(s)	369
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	3 cut(s)	38, 225, 456
RsaI	GTAC	1 cut(s)	319
RsaNI	GTAC	1 cut(s)	318
SaqAI	TTAA	1 cut(s)	354
SatI	GCNGC	4 cut(s)	160, 247, 268, 445
Sau3AI	GATC	5 cut(s)	38, 177, 225, 345, 456
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	278
SduI	GDGCHC	1 cut(s)	188
SfaNI	GCATC	1 cut(s)	299
SfcI	CTRYAG	1 cut(s)	102
SinI	GGWCC	1 cut(s)	4
Sse9I	AATT	2 cut(s)	51, 96
SsiI	CCGC	3 cut(s)	246, 267, 468
SspMI	CTAG	3 cut(s)	152, 465, 484
TaaI	ACNGT	2 cut(s)	15, 31
TaiI	ACGT	2 cut(s)	255, 323
TasI	AATT	2 cut(s)	51, 96
TauI	GCSGC	2 cut(s)	249, 270
TfiI	GAWTC	1 cut(s)	209
Tru1I	TTAA	1 cut(s)	354
Tru9I	TTAA	1 cut(s)	354
TscAI	CASTG	1 cut(s)	29
TseI	GCWGC	2 cut(s)	159, 444
TspRI	CASTG	1 cut(s)	29
VpaK11BI	GGWCC	1 cut(s)	4
XagI	CCTNNNNNAGG	1 cut(s)	468
XmnI	GAANNNNTTC	1 cut(s)	208
XspI	CTAG	3 cut(s)	152, 465, 484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.