RLG00000009793

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0007560
Physical Location & Seq
Reverse (-)
57855532 .. 57856002
471 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009793

Sequence Viewer

Length: 396 bp
ATGGACCGCCCCGGAAAGATTGGGATCCAAAAGGGGGAAGGAGTTGACGGCGAAAGCGAGCGGCGAGCGGCTGGGGTTGCGGACGACGACGTATTGGGAGAAGGTGAAGTTGATGGTGGAGTTAAGGATGGAGAAAGAGGGGAGGTGGACGGAGCTAATGGAGATTTTGGGGTCTTTGGGTCAAACCCAGAAACAATTTTTCAGAATCTTGGGTTTCGGGAAATCAAAGTGATCAAGATGGAAATCTTCTCAAGTTGTTTTCCTTTGACCACTTTGGTGGTGTTTTGGGTTGAAATTTGCTATGGGTGTTGTTTGAATCAAAAAGTTTGGGGACGGGGTCGTGTGGTTGTGGCTGTGGCTGTGGCTGTGGTGGTGGTGATGGTGGCTGATGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

13.91

Weight (kDa)

4.49

Isoelectric Point (pI)

14.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 61, 68
AciI CCGC 4 cut(s) 7, 61, 68, 80
AclWI GGATC 2 cut(s) 19, 32
AcsI RAATTY 1 cut(s) 294
AfiI CCNNNNNNNGG 1 cut(s) 34
AgsI TTSAA 2 cut(s) 293, 316
AleI CACNNNNGTG 1 cut(s) 275
AluBI AGCT 1 cut(s) 155
AluI AGCT 1 cut(s) 155
AlwI GGATC 2 cut(s) 19, 32
ApoI RAATTY 1 cut(s) 294
AspS9I GGNCC 1 cut(s) 4
AsuC2I CCSGG 1 cut(s) 12
AsuHPI GGTGA 2 cut(s) 116, 388
AvaII GGWCC 1 cut(s) 4
BamHI GGATCC 1 cut(s) 24
BccI CCATC 5 cut(s) 107, 122, 232, 373, 383
BceAI ACGGC 1 cut(s) 64
BclI TGATCA 1 cut(s) 231
BcnI CCSGG 1 cut(s) 12
BisI GCNGC 2 cut(s) 62, 69
BlsI GCNGC 2 cut(s) 63, 70
Bme1390I CCNGG 1 cut(s) 12
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 1 cut(s) 26
BmrFI CCNGG 1 cut(s) 12
BpuEI CTTGAG 1 cut(s) 235
BpuMI CCSGG 1 cut(s) 12
BsaBI GATNNNNATC 2 cut(s) 23, 242
BsaJI CCNNGG 1 cut(s) 10
Bsc4I CCNNNNNNNGG 1 cut(s) 34
Bse8I GATNNNNATC 2 cut(s) 23, 242
BseDI CCNNGG 1 cut(s) 10
BseGI GGATG 1 cut(s) 133
BseJI GATNNNNATC 2 cut(s) 23, 242
BseLI CCNNNNNNNGG 1 cut(s) 34
BseYI CCCAGC 1 cut(s) 71
BsiSI CCGG 1 cut(s) 12
BslFI GGGAC 1 cut(s) 345
BslI CCNNNNNNNGG 1 cut(s) 34
BsmFI GGGAC 1 cut(s) 345
Bsp143I GATC 2 cut(s) 24, 231
BspACI CCGC 4 cut(s) 7, 61, 68, 80
BspLI GGNNCC 1 cut(s) 26
BspPI GGATC 2 cut(s) 19, 32
BsrBI CCGCTC 2 cut(s) 61, 68
BssECI CCNNGG 1 cut(s) 10
BssMI GATC 2 cut(s) 24, 231
BstC8I GCNNGC 2 cut(s) 59, 66
BstF5I GGATG 1 cut(s) 133
BstKTI GATC 2 cut(s) 27, 234
BstMBI GATC 2 cut(s) 24, 231
BstMWI GCNNNNNNNGC 1 cut(s) 77
BstSCI CCNGG 1 cut(s) 10
BstX2I RGATCY 1 cut(s) 24
BstXI CCANNNNNNTGG 1 cut(s) 277
BstYI RGATCY 1 cut(s) 24
BtsCI GGATG 1 cut(s) 133
Cac8I GCNNGC 2 cut(s) 59, 66
Cfr13I GGNCC 1 cut(s) 4
CviJI RGCY 6 cut(s) 71, 155, 353, 359, 365, 386
CviKI_1 RGCY 6 cut(s) 71, 155, 353, 359, 365, 386
DpnI GATC 2 cut(s) 26, 233
DpnII GATC 2 cut(s) 24, 231
Eco47I GGWCC 1 cut(s) 4
FaiI YATR 1 cut(s) 303
FaqI GGGAC 1 cut(s) 345
FbaI TGATCA 1 cut(s) 231
Fnu4HI GCNGC 2 cut(s) 62, 69
FokI GGATG 1 cut(s) 140
Fsp4HI GCNGC 2 cut(s) 62, 69
GluI GCNGC 2 cut(s) 62, 69
GsaI CCCAGC 1 cut(s) 75
HapII CCGG 1 cut(s) 12
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HinfI GANTC 2 cut(s) 205, 316
HpaII CCGG 1 cut(s) 12
HphI GGTGA 2 cut(s) 116, 388
Hpy166II GTNNAC 2 cut(s) 46, 148
Hpy188I TCNGA 1 cut(s) 204
Hpy188III TCNNGA 2 cut(s) 218, 235
Hpy8I GTNNAC 2 cut(s) 46, 148
Hpy99I CGWCG 2 cut(s) 89, 92
HpyAV CCTTC 2 cut(s) 32, 95
HpyCH4IV ACGT 1 cut(s) 90
HpyF10VI GCNNNNNNNGC 1 cut(s) 77
HpySE526I ACGT 1 cut(s) 90
Ksp22I TGATCA 1 cut(s) 231
Kzo9I GATC 2 cut(s) 24, 231
LmnI GCTCC 1 cut(s) 152
LpnPI CCDG 3 cut(s) 25, 57, 201
MaeII ACGT 1 cut(s) 90
MalI GATC 2 cut(s) 26, 233
MbiI CCGCTC 2 cut(s) 61, 68
MboI GATC 2 cut(s) 24, 231
MboII GAAGA 1 cut(s) 238
MflI RGATCY 1 cut(s) 24
MluCI AATT 2 cut(s) 195, 294
MnlI CCTC 2 cut(s) 131, 136
MseI TTAA 1 cut(s) 123
MslI CAYNNNNRTG 1 cut(s) 275
MspI CCGG 1 cut(s) 12
MspR9I CCNGG 1 cut(s) 12
MwoI GCNNNNNNNGC 1 cut(s) 77
NciI CCSGG 1 cut(s) 12
NdeII GATC 2 cut(s) 24, 231
NlaIV GGNNCC 1 cut(s) 26
OliI CACNNNNGTG 1 cut(s) 275
PcsI WCGNNNNNNNCGW 1 cut(s) 54
PfeI GAWTC 2 cut(s) 205, 316
PflFI GACNNNGTC 1 cut(s) 336
PkrI GCNGC 2 cut(s) 63, 70
PspFI CCCAGC 1 cut(s) 71
PspN4I GGNNCC 1 cut(s) 26
PspPI GGNCC 1 cut(s) 4
PsuI RGATCY 1 cut(s) 24
PsyI GACNNNGTC 1 cut(s) 336
RseI CAYNNNNRTG 1 cut(s) 275
SaqAI TTAA 1 cut(s) 123
SatI GCNGC 2 cut(s) 62, 69
Sau3AI GATC 2 cut(s) 24, 231
Sau96I GGNCC 1 cut(s) 4
ScrFI CCNGG 1 cut(s) 12
SetI ASST 4 cut(s) 93, 106, 147, 157
SinI GGWCC 1 cut(s) 4
SmiMI CAYNNNNRTG 1 cut(s) 275
SmlI CTYRAG 1 cut(s) 250
SmoI CTYRAG 1 cut(s) 250
Sse9I AATT 2 cut(s) 195, 294
SsiI CCGC 4 cut(s) 7, 61, 68, 80
StyD4I CCNGG 1 cut(s) 10
TaiI ACGT 1 cut(s) 93
TasI AATT 2 cut(s) 195, 294
TauI GCSGC 2 cut(s) 64, 71
TfiI GAWTC 2 cut(s) 205, 316
Tru1I TTAA 1 cut(s) 123
Tru9I TTAA 1 cut(s) 123
TspGWI ACGGA 1 cut(s) 165
Tth111I GACNNNGTC 1 cut(s) 336
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.