RLG00000018921

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0007560
Physical Location & Seq
Forward (+)
42813816 .. 42814564
749 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018921

Sequence Viewer

Length: 453 bp
ATGCTGAATCAAACTACCGGACAAGTAGATCCAGGGAGTTCGTGGGGTATGGCTCACAAAGAAAAAGGCGGCTCCTGCGCGGAGTGGGGCCTTTGGTCTCGTCGGATTGCAGTGAGTGCAGCCGGGCGAGCAGTGGGAGGTCGGCGTCGGGTTCTAGATTGCAGCTCTGAGGCTATGGAGGTCGCGAGCACAGGTCCCATGGTTTGGGATGGTTTCGGTTTCCTCCAGGTTTATTTCAAACTATGGTGGCGGCGTGAAGAGGGAAGTCGACGGCTTGGGGTGCTGTGGATCAGCATCCGAGGGGATCTGGGTTCGTGCTTCGGTACGCCAGGTCTCTCTCGGACTCTTGGAGCATCATTGAGGTGGTCAAACCCTGGGGTGTGCTTGGACTGGTGGTGGCGGTTGTGGCAGGGGTGGCGGTCGCGTTTTGCAGCTGTGCAGCGTCTGCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

16.86

Weight (kDa)

10.68

Isoelectric Point (pI)

56.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 204
AccI GTMKAC 1 cut(s) 268
AccII CGCG 3 cut(s) 80, 185, 424
AciI CCGC 5 cut(s) 69, 80, 250, 400, 418
AclWI GGATC 3 cut(s) 23, 296, 312
AcyI GRCGYC 1 cut(s) 145
AfaI GTAC 1 cut(s) 325
AfiI CCNNNNNNNGG 1 cut(s) 204
AgsI TTSAA 1 cut(s) 238
AjnI CCWGG 4 cut(s) 31, 225, 328, 373
AluBI AGCT 2 cut(s) 165, 434
AluI AGCT 2 cut(s) 165, 434
Alw21I GWGCWC 1 cut(s) 191
Alw26I GTCTC 2 cut(s) 102, 338
AlwI GGATC 3 cut(s) 23, 296, 312
AlwNI CAGNNNCTG 1 cut(s) 445
AoxI GGCC 1 cut(s) 88
ApeKI GCWGC 4 cut(s) 119, 162, 431, 439
AspLEI GCGC 1 cut(s) 80
AspS9I GGNCC 2 cut(s) 88, 194
AsuC2I CCSGG 1 cut(s) 124
AvaII GGWCC 1 cut(s) 194
Bbv12I GWGCWC 1 cut(s) 191
BbvI GCAGC 3 cut(s) 131, 174, 443
BccI CCATC 1 cut(s) 203
BceAI ACGGC 1 cut(s) 287
BciT130I CCWGG 4 cut(s) 33, 227, 330, 375
BcnI CCSGG 1 cut(s) 124
BcoDI GTCTC 2 cut(s) 102, 338
BfaI CTAG 2 cut(s) 155, 451
BisI GCNGC 6 cut(s) 70, 120, 163, 251, 432, 440
BlsI GCNGC 6 cut(s) 71, 121, 164, 252, 433, 441
Bme1390I CCNGG 5 cut(s) 33, 124, 227, 330, 375
Bme18I GGWCC 1 cut(s) 194
BmgT120I GGNCC 2 cut(s) 88, 194
BmiI GGNNCC 3 cut(s) 73, 89, 196
BmrFI CCNGG 5 cut(s) 33, 124, 227, 330, 375
BmsI GCATC 2 cut(s) 303, 362
BpmI CTGGAG 1 cut(s) 209
BpuMI CCSGG 1 cut(s) 124
BsaBI GATNNNNATC 1 cut(s) 293
BsaHI GRCGYC 1 cut(s) 145
BsaI GGTCTC 2 cut(s) 102, 338
BsaJI CCNNGG 5 cut(s) 32, 198, 298, 373, 374
BsaWI WCCGGW 1 cut(s) 17
Bsc4I CCNNNNNNNGG 1 cut(s) 204
Bse1I ACTGG 1 cut(s) 395
Bse8I GATNNNNATC 1 cut(s) 293
BseBI CCWGG 4 cut(s) 33, 227, 330, 375
BseDI CCNNGG 5 cut(s) 32, 198, 298, 373, 374
BseGI GGATG 2 cut(s) 214, 294
BseJI GATNNNNATC 1 cut(s) 293
BseLI CCNNNNNNNGG 1 cut(s) 204
BseMII CTCAG 1 cut(s) 159
BseNI ACTGG 1 cut(s) 395
BseXI GCAGC 3 cut(s) 131, 174, 443
BsgI GTGCAG 1 cut(s) 138
Bsh1236I CGCG 3 cut(s) 80, 185, 424
Bsh1285I CGRYCG 1 cut(s) 422
BshFI GGCC 1 cut(s) 90
BsiEI CGRYCG 1 cut(s) 422
BsiHKAI GWGCWC 1 cut(s) 191
BsiSI CCGG 2 cut(s) 18, 123
BslFI GGGAC 1 cut(s) 180
BslI CCNNNNNNNGG 1 cut(s) 204
BsmAI GTCTC 2 cut(s) 102, 338
BsmFI GGGAC 1 cut(s) 180
BsnI GGCC 1 cut(s) 90
Bso31I GGTCTC 2 cut(s) 102, 338
Bsp1286I GDGCHC 1 cut(s) 191
Bsp143I GATC 3 cut(s) 28, 288, 304
Bsp19I CCATGG 1 cut(s) 198
Bsp68I TCGCGA 1 cut(s) 185
BspACI CCGC 5 cut(s) 69, 80, 250, 400, 418
BspANI GGCC 1 cut(s) 90
BspCNI CTCAG 1 cut(s) 160
BspFNI CGCG 3 cut(s) 80, 185, 424
BspLI GGNNCC 3 cut(s) 73, 89, 196
BspPI GGATC 3 cut(s) 23, 296, 312
BspTNI GGTCTC 2 cut(s) 102, 338
BsrI ACTGG 1 cut(s) 395
BssECI CCNNGG 5 cut(s) 32, 198, 298, 373, 374
BssMI GATC 3 cut(s) 28, 288, 304
BssNI GRCGYC 1 cut(s) 145
BssT1I CCWWGG 1 cut(s) 198
Bst2UI CCWGG 4 cut(s) 33, 227, 330, 375
Bst6I CTCTTC 1 cut(s) 252
BstACI GRCGYC 1 cut(s) 145
BstAPI GCANNNNNTGC 2 cut(s) 116, 445
BstC8I GCNNGC 2 cut(s) 129, 187
BstDEI CTNAG 1 cut(s) 168
BstDSI CCRYGG 1 cut(s) 198
BstF5I GGATG 2 cut(s) 214, 294
BstFNI CGCG 3 cut(s) 80, 185, 424
BstHHI GCGC 1 cut(s) 80
BstKTI GATC 3 cut(s) 31, 291, 307
BstMAI GTCTC 2 cut(s) 102, 338
BstMBI GATC 3 cut(s) 28, 288, 304
BstMCI CGRYCG 1 cut(s) 422
BstMWI GCNNNNNNNGC 7 cut(s) 75, 116, 128, 280, 406, 415, 445
BstNI CCWGG 4 cut(s) 33, 227, 330, 375
BstSCI CCNGG 5 cut(s) 31, 122, 225, 328, 373
BstUI CGCG 3 cut(s) 80, 185, 424
BstV1I GCAGC 3 cut(s) 131, 174, 443
BstX2I RGATCY 2 cut(s) 28, 304
BstYI RGATCY 2 cut(s) 28, 304
BsuRI GGCC 1 cut(s) 90
BtgI CCRYGG 1 cut(s) 198
BtsCI GGATG 2 cut(s) 214, 294
BtsI GCAGTG 2 cut(s) 117, 138
BtsIMutI CAGTG 2 cut(s) 117, 138
BtuMI TCGCGA 1 cut(s) 185
Cac8I GCNNGC 2 cut(s) 129, 187
CaiI CAGNNNCTG 1 cut(s) 445
CfoI GCGC 1 cut(s) 80
Cfr13I GGNCC 2 cut(s) 88, 194
CseI GACGC 2 cut(s) 134, 431
Csp6I GTAC 1 cut(s) 324
CviAII CATG 1 cut(s) 199
CviJI RGCY 8 cut(s) 53, 72, 90, 122, 165, 173, 274, 434
CviKI_1 RGCY 8 cut(s) 53, 72, 90, 122, 165, 173, 274, 434
CviQI GTAC 1 cut(s) 324
DdeI CTNAG 1 cut(s) 168
DpnI GATC 3 cut(s) 30, 290, 306
DpnII GATC 3 cut(s) 28, 288, 304
Eam1104I CTCTTC 1 cut(s) 252
EarI CTCTTC 1 cut(s) 252
Eco130I CCWWGG 1 cut(s) 198
Eco31I GGTCTC 2 cut(s) 102, 338
Eco47I GGWCC 1 cut(s) 194
EcoO109I RGGNCCY 2 cut(s) 88, 194
EcoRII CCWGG 4 cut(s) 31, 225, 328, 373
EcoT14I CCWWGG 1 cut(s) 198
ErhI CCWWGG 1 cut(s) 198
FaeI CATG 1 cut(s) 202
FaiI YATR 4 cut(s) 50, 176, 200, 244
FaqI GGGAC 1 cut(s) 180
FatI CATG 1 cut(s) 198
FblI GTMKAC 1 cut(s) 268
Fnu4HI GCNGC 6 cut(s) 70, 120, 163, 251, 432, 440
FokI GGATG 2 cut(s) 221, 281
Fsp4HI GCNGC 6 cut(s) 70, 120, 163, 251, 432, 440
FspBI CTAG 2 cut(s) 155, 451
GlaI GCGC 1 cut(s) 79
GluI GCNGC 6 cut(s) 70, 120, 163, 251, 432, 440
GsuI CTGGAG 1 cut(s) 209
HaeIII GGCC 1 cut(s) 90
HapII CCGG 2 cut(s) 18, 123
HgaI GACGC 2 cut(s) 134, 431
HhaI GCGC 1 cut(s) 80
Hin1I GRCGYC 1 cut(s) 145
Hin1II CATG 1 cut(s) 202
Hin6I GCGC 1 cut(s) 78
HinP1I GCGC 1 cut(s) 78
HincII GTYRAC 1 cut(s) 269
HindII GTYRAC 1 cut(s) 269
HinfI GANTC 2 cut(s) 7, 343
HpaII CCGG 2 cut(s) 18, 123
Hpy166II GTNNAC 1 cut(s) 269
Hpy188I TCNGA 4 cut(s) 105, 169, 299, 342
Hpy188III TCNNGA 2 cut(s) 155, 184
Hpy8I GTNNAC 1 cut(s) 269
Hpy99I CGWCG 3 cut(s) 105, 150, 273
HpyCH4V TGCA 5 cut(s) 110, 119, 162, 431, 439
HpyF10VI GCNNNNNNNGC 7 cut(s) 75, 116, 128, 280, 406, 415, 445
HpyF3I CTNAG 1 cut(s) 168
Hsp92I GRCGYC 1 cut(s) 145
Hsp92II CATG 1 cut(s) 202
HspAI GCGC 1 cut(s) 78
Kzo9I GATC 3 cut(s) 28, 288, 304
LmnI GCTCC 2 cut(s) 77, 350
Lsp1109I GCAGC 3 cut(s) 131, 174, 443
LweI GCATC 2 cut(s) 303, 362
MaeI CTAG 2 cut(s) 155, 451
MalI GATC 3 cut(s) 30, 290, 306
MboI GATC 3 cut(s) 28, 288, 304
MboII GAAGA 1 cut(s) 269
MflI RGATCY 2 cut(s) 28, 304
MhlI GDGCHC 1 cut(s) 191
MlyI GAGTC 1 cut(s) 337
MmeI TCCRAC 1 cut(s) 83
MnlI CCTC 7 cut(s) 131, 163, 172, 233, 253, 293, 354
MslI CAYNNNNRTG 1 cut(s) 361
MspA1I CMGCKG 1 cut(s) 434
MspI CCGG 2 cut(s) 18, 123
MspR9I CCNGG 5 cut(s) 33, 124, 227, 330, 375
MvaI CCWGG 4 cut(s) 33, 227, 330, 375
MvnI CGCG 3 cut(s) 80, 185, 424
MwoI GCNNNNNNNGC 7 cut(s) 75, 116, 128, 280, 406, 415, 445
NciI CCSGG 1 cut(s) 124
NcoI CCATGG 1 cut(s) 198
NdeII GATC 3 cut(s) 28, 288, 304
NlaIII CATG 1 cut(s) 202
NlaIV GGNNCC 3 cut(s) 73, 89, 196
NruI TCGCGA 1 cut(s) 185
PasI CCCWGGG 1 cut(s) 374
PfeI GAWTC 1 cut(s) 7
PflMI CCANNNNNTGG 1 cut(s) 204
PkrI GCNGC 6 cut(s) 71, 121, 164, 252, 433, 441
PleI GAGTC 1 cut(s) 337
PpsI GAGTC 1 cut(s) 337
PpuMI RGGWCCY 1 cut(s) 194
Psp5II RGGWCCY 1 cut(s) 194
Psp6I CCWGG 4 cut(s) 31, 225, 328, 373
PspGI CCWGG 4 cut(s) 31, 225, 328, 373
PspN4I GGNNCC 3 cut(s) 73, 89, 196
PspPI GGNCC 2 cut(s) 88, 194
PspPPI RGGWCCY 1 cut(s) 194
PstNI CAGNNNCTG 1 cut(s) 445
PsuI RGATCY 2 cut(s) 28, 304
PvuII CAGCTG 1 cut(s) 434
RruI TCGCGA 1 cut(s) 185
RsaI GTAC 1 cut(s) 325
RsaNI GTAC 1 cut(s) 324
RseI CAYNNNNRTG 1 cut(s) 361
SalI GTCGAC 1 cut(s) 267
SatI GCNGC 6 cut(s) 70, 120, 163, 251, 432, 440
Sau3AI GATC 3 cut(s) 28, 288, 304
Sau96I GGNCC 2 cut(s) 88, 194
SchI GAGTC 1 cut(s) 337
ScrFI CCNGG 5 cut(s) 33, 124, 227, 330, 375
SduI GDGCHC 1 cut(s) 191
SetI ASST 8 cut(s) 142, 167, 183, 196, 231, 334, 365, 436
SfaNI GCATC 2 cut(s) 303, 362
SinI GGWCC 1 cut(s) 194
SmiMI CAYNNNNRTG 1 cut(s) 361
SsiI CCGC 5 cut(s) 69, 80, 250, 400, 418
SspMI CTAG 2 cut(s) 155, 451
StyD4I CCNGG 5 cut(s) 31, 122, 225, 328, 373
StyI CCWWGG 1 cut(s) 198
TaqI TCGA 1 cut(s) 268
TauI GCSGC 2 cut(s) 72, 253
TfiI GAWTC 1 cut(s) 7
TscAI CASTG 2 cut(s) 117, 138
TseI GCWGC 4 cut(s) 119, 162, 431, 439
TspRI CASTG 2 cut(s) 117, 138
Van91I CCANNNNNTGG 1 cut(s) 204
VpaK11BI GGWCC 1 cut(s) 194
XbaI TCTAGA 1 cut(s) 154
XcmI CCANNNNNNNNNTGG 1 cut(s) 39
XmiI GTMKAC 1 cut(s) 268
XspI CTAG 2 cut(s) 155, 451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.