RLG00000017041

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0007560
Physical Location & Seq
Forward (+)
12347935 .. 12348508
574 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017041

Sequence Viewer

Length: 399 bp
ATGTCTCCTCTTCTTCCTCCTCAATCTCTCATTGATGAGAGCCTTCTCCAGTTGCTCTACCCTCTGCGACAACGACCCCAACAGCCAAGGATCAACATGGAAATCTTCTCAGGTTGTTTTCCTTTAACCACTTTGGTGGTGTTTTGGGTTGAAATCTGCTACGGGTGTTGTTTGAATCACAAAGTTTGTGGACGGGGTCATGTGGTTGTGGTTGTGGTGGTGGTGGTGGTGGTGGTGGTGGGGCAGATGGATGATGGCTTTCCAATTCCTCCGCCGCCCCCTAACGAAGCTAGCCACTCCCACATCTCGAGCGACTCTGCTGGAGTGCTGCTATGCTGCTGCACCACCTTGAAATTGCTGGTGCTCGACCACGACTTGAGCCTTCCTGCCACTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

14.35

Weight (kDa)

5.58

Isoelectric Point (pI)

59.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 272, 275
AclWI GGATC 1 cut(s) 98
AgsI TTSAA 3 cut(s) 152, 175, 352
AleI CACNNNNGTG 1 cut(s) 134
AluBI AGCT 1 cut(s) 290
AluI AGCT 1 cut(s) 290
Alw21I GWGCWC 1 cut(s) 366
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 1 cut(s) 98
Ama87I CYCGRG 1 cut(s) 307
ApeKI GCWGC 3 cut(s) 328, 336, 339
AsuNHI GCTAGC 1 cut(s) 290
AvaI CYCGRG 1 cut(s) 307
Bbv12I GWGCWC 1 cut(s) 366
BbvI GCAGC 3 cut(s) 315, 323, 326
BccI CCATC 2 cut(s) 241, 248
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 1 cut(s) 291
BisI GCNGC 4 cut(s) 275, 329, 337, 340
BlsI GCNGC 4 cut(s) 276, 330, 338, 341
BmeT110I CYCGRG 1 cut(s) 307
BmtI GCTAGC 1 cut(s) 294
BpmI CTGGAG 2 cut(s) 32, 342
BpuEI CTTGAG 1 cut(s) 397
BsaJI CCNNGG 1 cut(s) 86
Bse1I ACTGG 1 cut(s) 49
BseDI CCNNGG 1 cut(s) 86
BseGI GGATG 1 cut(s) 256
BseMII CTCAG 1 cut(s) 123
BseNI ACTGG 1 cut(s) 49
BseRI GAGGAG 1 cut(s) 9
BseXI GCAGC 3 cut(s) 315, 323, 326
BsgI GTGCAG 1 cut(s) 325
BsiHKAI GWGCWC 1 cut(s) 366
BsiHKCI CYCGRG 1 cut(s) 307
BsmAI GTCTC 1 cut(s) 9
BsoBI CYCGRG 1 cut(s) 307
Bsp1286I GDGCHC 1 cut(s) 366
Bsp143I GATC 1 cut(s) 90
BspACI CCGC 2 cut(s) 272, 275
BspCNI CTCAG 1 cut(s) 122
BspOI GCTAGC 1 cut(s) 294
BspPI GGATC 1 cut(s) 98
BsrI ACTGG 1 cut(s) 49
BssECI CCNNGG 1 cut(s) 86
BssMI GATC 1 cut(s) 90
BssT1I CCWWGG 1 cut(s) 86
Bst6I CTCTTC 1 cut(s) 15
BstC8I GCNNGC 1 cut(s) 292
BstDEI CTNAG 1 cut(s) 109
BstF5I GGATG 1 cut(s) 256
BstKTI GATC 1 cut(s) 93
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 1 cut(s) 90
BstV1I GCAGC 3 cut(s) 315, 323, 326
BstXI CCANNNNNNTGG 1 cut(s) 136
BtsCI GGATG 1 cut(s) 256
BtsI GCAGTG 1 cut(s) 390
BtsIMutI CAGTG 1 cut(s) 390
Cac8I GCNNGC 1 cut(s) 292
CspCI CAANNNNNGTGG 2 cut(s) 169, 204
CviAII CATG 2 cut(s) 97, 200
CviJI RGCY 6 cut(s) 42, 85, 258, 290, 294, 381
CviKI_1 RGCY 6 cut(s) 42, 85, 258, 290, 294, 381
DdeI CTNAG 1 cut(s) 109
DpnI GATC 1 cut(s) 92
DpnII GATC 1 cut(s) 90
Eam1104I CTCTTC 1 cut(s) 15
EarI CTCTTC 1 cut(s) 15
EciI GGCGGA 1 cut(s) 261
Eco130I CCWWGG 1 cut(s) 86
Eco88I CYCGRG 1 cut(s) 307
EcoT14I CCWWGG 1 cut(s) 86
ErhI CCWWGG 1 cut(s) 86
FaeI CATG 2 cut(s) 100, 203
FaiI YATR 3 cut(s) 98, 201, 334
FatI CATG 2 cut(s) 96, 199
Fnu4HI GCNGC 4 cut(s) 275, 329, 337, 340
FokI GGATG 1 cut(s) 263
Fsp4HI GCNGC 4 cut(s) 275, 329, 337, 340
FspBI CTAG 1 cut(s) 291
GluI GCNGC 4 cut(s) 275, 329, 337, 340
GsuI CTGGAG 2 cut(s) 32, 342
Hin1II CATG 2 cut(s) 100, 203
HinfI GANTC 2 cut(s) 175, 314
Hpy166II GTNNAC 1 cut(s) 191
Hpy188III TCNNGA 1 cut(s) 307
Hpy8I GTNNAC 1 cut(s) 191
HpyAV CCTTC 2 cut(s) 53, 392
HpyCH4V TGCA 1 cut(s) 342
HpyF3I CTNAG 1 cut(s) 109
Hsp92II CATG 2 cut(s) 100, 203
Kzo9I GATC 1 cut(s) 90
LpnPI CCDG 4 cut(s) 62, 96, 306, 344
Lsp1109I GCAGC 3 cut(s) 315, 323, 326
MaeI CTAG 1 cut(s) 291
MalI GATC 1 cut(s) 92
MboI GATC 1 cut(s) 90
MboII GAAGA 2 cut(s) 5, 97
MhlI GDGCHC 1 cut(s) 366
MluCI AATT 2 cut(s) 264, 353
MlyI GAGTC 1 cut(s) 308
MnlI CCTC 5 cut(s) 18, 27, 30, 72, 279
MseI TTAA 1 cut(s) 125
MslI CAYNNNNRTG 1 cut(s) 134
NdeII GATC 1 cut(s) 90
NheI GCTAGC 1 cut(s) 290
NlaIII CATG 2 cut(s) 100, 203
OliI CACNNNNGTG 1 cut(s) 134
PaeR7I CTCGAG 1 cut(s) 307
PfeI GAWTC 1 cut(s) 175
PflFI GACNNNGTC 1 cut(s) 195
PkrI GCNGC 4 cut(s) 276, 330, 338, 341
PleI GAGTC 1 cut(s) 308
PpsI GAGTC 1 cut(s) 308
PsyI GACNNNGTC 1 cut(s) 195
RseI CAYNNNNRTG 1 cut(s) 134
SaqAI TTAA 1 cut(s) 125
SatI GCNGC 4 cut(s) 275, 329, 337, 340
Sau3AI GATC 1 cut(s) 90
SchI GAGTC 1 cut(s) 308
SduI GDGCHC 1 cut(s) 366
SetI ASST 3 cut(s) 115, 292, 350
Sfr274I CTCGAG 1 cut(s) 307
SlaI CTCGAG 1 cut(s) 307
SmiMI CAYNNNNRTG 1 cut(s) 134
SmlI CTYRAG 2 cut(s) 307, 376
SmoI CTYRAG 2 cut(s) 307, 376
Sse9I AATT 2 cut(s) 264, 353
SsiI CCGC 2 cut(s) 272, 275
SspMI CTAG 1 cut(s) 291
StyI CCWWGG 1 cut(s) 86
TaqI TCGA 2 cut(s) 308, 366
TasI AATT 2 cut(s) 264, 353
TauI GCSGC 1 cut(s) 277
TfiI GAWTC 1 cut(s) 175
Tru1I TTAA 1 cut(s) 125
Tru9I TTAA 1 cut(s) 125
TscAI CASTG 1 cut(s) 397
TseI GCWGC 3 cut(s) 328, 336, 339
TspRI CASTG 1 cut(s) 397
Tth111I GACNNNGTC 1 cut(s) 195
XhoI CTCGAG 1 cut(s) 307
XspI CTAG 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.