Rh4DG089100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0007560
Physical Location & Seq
Forward (+)
13521590 .. 13521871
282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG089100.1

Sequence Viewer

Length: 282 bp
ATGGAGATCGTGGGCACAAGTTTGGGGTTTTGGAGGGATTCAGTTCTCTGCCGGATTTCTTCTAAATTTCATGGCGGCGGCGTGGAGGTTGGGGCGACGGCTTGGGGTGCTACAGATCTGCATCCGGTGGGATTTGGTTTCGTGTTTCGGTACGTCGGGTCTCGCTCGGACCTTTTGGATCGTCGTCAAGGTGGTGAAACGCTGGGGTGTGTTTGGATGGGTGGTGGCGGTCGTGGCAAGGGTGGAGGTCGCGTTTTACAGCTGTGCCCGGATCTGCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

9.81

Weight (kDa)

8.63

Isoelectric Point (pI)

37.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 252
AciI CCGC 3 cut(s) 75, 78, 228
AclWI GGATC 2 cut(s) 186, 279
AcsI RAATTY 1 cut(s) 65
AfaI GTAC 1 cut(s) 152
AluBI AGCT 1 cut(s) 262
AluI AGCT 1 cut(s) 262
Alw26I GTCTC 1 cut(s) 165
AlwI GGATC 2 cut(s) 186, 279
ApoI RAATTY 1 cut(s) 65
AspS9I GGNCC 1 cut(s) 169
AsuC2I CCSGG 1 cut(s) 269
AsuHPI GGTGA 1 cut(s) 206
AvaII GGWCC 1 cut(s) 169
BaeGI GKGCMC 2 cut(s) 17, 269
BccI CCATC 1 cut(s) 211
BceAI ACGGC 1 cut(s) 114
BcnI CCSGG 1 cut(s) 269
BcoDI GTCTC 1 cut(s) 165
BfaI CTAG 1 cut(s) 280
BfmI CTRYAG 1 cut(s) 111
BglII AGATCT 1 cut(s) 115
BisI GCNGC 2 cut(s) 76, 79
BlsI GCNGC 2 cut(s) 77, 80
Bme1390I CCNGG 1 cut(s) 269
Bme18I GGWCC 1 cut(s) 169
BmgT120I GGNCC 1 cut(s) 169
BmrFI CCNGG 1 cut(s) 269
BmsI GCATC 1 cut(s) 130
BpuMI CCSGG 1 cut(s) 269
BsaBI GATNNNNATC 1 cut(s) 120
BsaI GGTCTC 1 cut(s) 165
BsaWI WCCGGW 1 cut(s) 124
BsaXI ACNNNNNCTCC 2 cut(s) 237, 267
Bse8I GATNNNNATC 1 cut(s) 120
BseGI GGATG 2 cut(s) 121, 222
BseJI GATNNNNATC 1 cut(s) 120
BseSI GKGCMC 2 cut(s) 17, 269
BseYI CCCAGC 1 cut(s) 202
Bsh1236I CGCG 1 cut(s) 252
Bsh1285I CGRYCG 1 cut(s) 232
BsiEI CGRYCG 1 cut(s) 232
BsiSI CCGG 3 cut(s) 52, 125, 269
BsmAI GTCTC 1 cut(s) 165
Bso31I GGTCTC 1 cut(s) 165
Bsp1286I GDGCHC 2 cut(s) 17, 269
Bsp143I GATC 4 cut(s) 6, 115, 178, 271
BspACI CCGC 3 cut(s) 75, 78, 228
BspFNI CGCG 1 cut(s) 252
BspPI GGATC 2 cut(s) 186, 279
BspTNI GGTCTC 1 cut(s) 165
BssMI GATC 4 cut(s) 6, 115, 178, 271
BstF5I GGATG 2 cut(s) 121, 222
BstFNI CGCG 1 cut(s) 252
BstKTI GATC 4 cut(s) 9, 118, 181, 274
BstMAI GTCTC 1 cut(s) 165
BstMBI GATC 4 cut(s) 6, 115, 178, 271
BstMCI CGRYCG 1 cut(s) 232
BstMWI GCNNNNNNNGC 2 cut(s) 107, 234
BstSCI CCNGG 1 cut(s) 267
BstSFI CTRYAG 1 cut(s) 111
BstSLI GKGCMC 2 cut(s) 17, 269
BstUI CGCG 1 cut(s) 252
BstX2I RGATCY 2 cut(s) 115, 271
BstYI RGATCY 2 cut(s) 115, 271
BtsCI GGATG 2 cut(s) 121, 222
Cfr13I GGNCC 1 cut(s) 169
Csp6I GTAC 1 cut(s) 151
CviAII CATG 1 cut(s) 71
CviJI RGCY 2 cut(s) 101, 262
CviKI_1 RGCY 2 cut(s) 101, 262
CviQI GTAC 1 cut(s) 151
DpnI GATC 4 cut(s) 8, 117, 180, 273
DpnII GATC 4 cut(s) 6, 115, 178, 271
Eco31I GGTCTC 1 cut(s) 165
Eco47I GGWCC 1 cut(s) 169
FaeI CATG 1 cut(s) 74
FaiI YATR 1 cut(s) 72
FatI CATG 1 cut(s) 70
Fnu4HI GCNGC 2 cut(s) 76, 79
FokI GGATG 2 cut(s) 108, 229
Fsp4HI GCNGC 2 cut(s) 76, 79
FspBI CTAG 1 cut(s) 280
GluI GCNGC 2 cut(s) 76, 79
GsaI CCCAGC 1 cut(s) 206
HapII CCGG 3 cut(s) 52, 125, 269
Hin1II CATG 1 cut(s) 74
HinfI GANTC 1 cut(s) 38
HpaII CCGG 3 cut(s) 52, 125, 269
HphI GGTGA 1 cut(s) 206
Hpy188I TCNGA 1 cut(s) 169
Hpy99I CGWCG 3 cut(s) 100, 158, 186
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 1 cut(s) 121
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 234
HpySE526I ACGT 1 cut(s) 153
Hsp92II CATG 1 cut(s) 74
Kzo9I GATC 4 cut(s) 6, 115, 178, 271
LpnPI CCDG 3 cut(s) 65, 138, 188
LweI GCATC 1 cut(s) 130
MaeI CTAG 1 cut(s) 280
MaeII ACGT 1 cut(s) 153
MalI GATC 4 cut(s) 8, 117, 180, 273
MboI GATC 4 cut(s) 6, 115, 178, 271
MboII GAAGA 1 cut(s) 51
MflI RGATCY 2 cut(s) 115, 271
MhlI GDGCHC 2 cut(s) 17, 269
MluCI AATT 1 cut(s) 65
MnlI CCTC 3 cut(s) 27, 79, 239
MspA1I CMGCKG 1 cut(s) 262
MspI CCGG 3 cut(s) 52, 125, 269
MspR9I CCNGG 1 cut(s) 269
MvnI CGCG 1 cut(s) 252
MwoI GCNNNNNNNGC 2 cut(s) 107, 234
NciI CCSGG 1 cut(s) 269
NdeII GATC 4 cut(s) 6, 115, 178, 271
NlaIII CATG 1 cut(s) 74
PfeI GAWTC 1 cut(s) 38
PkrI GCNGC 2 cut(s) 77, 80
PspFI CCCAGC 1 cut(s) 202
PspPI GGNCC 1 cut(s) 169
PsuI RGATCY 2 cut(s) 115, 271
PvuII CAGCTG 1 cut(s) 262
RsaI GTAC 1 cut(s) 152
RsaNI GTAC 1 cut(s) 151
SatI GCNGC 2 cut(s) 76, 79
Sau3AI GATC 4 cut(s) 6, 115, 178, 271
Sau96I GGNCC 1 cut(s) 169
ScrFI CCNGG 1 cut(s) 269
SduI GDGCHC 2 cut(s) 17, 269
SetI ASST 6 cut(s) 90, 156, 174, 193, 250, 264
SfaNI GCATC 1 cut(s) 130
SfcI CTRYAG 1 cut(s) 111
SinI GGWCC 1 cut(s) 169
Sse9I AATT 1 cut(s) 65
SsiI CCGC 3 cut(s) 75, 78, 228
SspMI CTAG 1 cut(s) 280
StyD4I CCNGG 1 cut(s) 267
TaiI ACGT 1 cut(s) 156
TasI AATT 1 cut(s) 65
TauI GCSGC 2 cut(s) 78, 81
TfiI GAWTC 1 cut(s) 38
TspDTI ATGAA 1 cut(s) 59
VpaK11BI GGWCC 1 cut(s) 169
XapI RAATTY 1 cut(s) 65
XspI CTAG 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.