RLG00000027020

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0007560
Physical Location & Seq
Reverse (-)
7710586 .. 7712625
2040 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027020

Sequence Viewer

Length: 492 bp
ATGGATGGTCGGCCATCAAAGAATTGGCTATCGTTTTTCAGTCGAGAATTTCAGCTCTCCTGCTCGCCATGCTCTCCACTATGGCAACAATTTACATCGCCGGCTGGTTATGGTGGGAGGTGGGCGTTGGGTTCTGGATCGTCGCTCTGCGGCTATGGAGATCGTGGGCACCGGTTTTTGGGGTTTGGGAGGGCTTCAGTTCTCTGCTGGATTTCTTCTAAATTTCATGACGGCGGCGTAGAGGTTGGGGTGACTGCTTGGAGTGCTGCAGATATGCATCTGATGGATTTGGTTTCGTGTTTCTGTACGTTGGGTCTCGCTCAGACTCTTTGGATCGTCGTCAAGGTGGTGAAACGCTGGGGTGTGCTTGGATGGGTGGTGGCGGTCATGGCAGGGGTGGAGGACACATTTTACAGCTGTGCATGGATCTGCCCCAGTAGAGGAGATGGTGTTTGGGCCTGGCATGGGCTTCCTGTTTGGAGCTTGGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

17.86

Weight (kDa)

8.15

Isoelectric Point (pI)

53.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 168
AciI CCGC 3 cut(s) 150, 234, 383
AclWI GGATC 3 cut(s) 145, 341, 434
AcoI YGGCCR 1 cut(s) 11
AcsI RAATTY 2 cut(s) 47, 221
AcuI CTGAAG 1 cut(s) 180
AfaI GTAC 1 cut(s) 307
AfiI CCNNNNNNNGG 3 cut(s) 178, 440, 465
AgeI ACCGGT 1 cut(s) 171
AjnI CCWGG 1 cut(s) 458
AluBI AGCT 3 cut(s) 55, 417, 483
AluI AGCT 3 cut(s) 55, 417, 483
Alw26I GTCTC 1 cut(s) 320
AlwI GGATC 3 cut(s) 145, 341, 434
AoxI GGCC 2 cut(s) 11, 456
ApeKI GCWGC 1 cut(s) 266
ApoI RAATTY 2 cut(s) 47, 221
AsiGI ACCGGT 1 cut(s) 171
AspS9I GGNCC 1 cut(s) 456
AsuHPI GGTGA 2 cut(s) 262, 361
BaeGI GKGCMC 1 cut(s) 171
BanI GGYRCC 1 cut(s) 168
BbvI GCAGC 1 cut(s) 253
BccI CCATC 4 cut(s) 22, 277, 366, 440
BceAI ACGGC 1 cut(s) 247
BciT130I CCWGG 1 cut(s) 460
BcoDI GTCTC 1 cut(s) 320
BfaI CTAG 1 cut(s) 490
BfmI CTRYAG 1 cut(s) 267
BisI GCNGC 3 cut(s) 151, 235, 267
BlsI GCNGC 3 cut(s) 152, 236, 268
Bme1390I CCNGG 1 cut(s) 460
BmgT120I GGNCC 1 cut(s) 456
BmiI GGNNCC 1 cut(s) 170
BmrFI CCNGG 1 cut(s) 460
BmrI ACTGGG 1 cut(s) 429
BmsI GCATC 1 cut(s) 286
BmuI ACTGGG 1 cut(s) 429
BsaBI GATNNNNATC 1 cut(s) 276
BsaI GGTCTC 1 cut(s) 320
BsaWI WCCGGW 1 cut(s) 171
BsaXI ACNNNNNCTCC 2 cut(s) 435, 465
Bsc4I CCNNNNNNNGG 3 cut(s) 178, 440, 465
Bse118I RCCGGY 2 cut(s) 100, 171
Bse1I ACTGG 1 cut(s) 435
Bse8I GATNNNNATC 1 cut(s) 276
BseBI CCWGG 1 cut(s) 460
BseGI GGATG 2 cut(s) 10, 377
BseJI GATNNNNATC 1 cut(s) 276
BseLI CCNNNNNNNGG 3 cut(s) 178, 440, 465
BseMII CTCAG 1 cut(s) 335
BseNI ACTGG 1 cut(s) 435
BseRI GAGGAG 1 cut(s) 456
BseSI GKGCMC 1 cut(s) 171
BseXI GCAGC 1 cut(s) 253
BseYI CCCAGC 1 cut(s) 357
BshFI GGCC 2 cut(s) 13, 458
BshNI GGYRCC 1 cut(s) 168
BshTI ACCGGT 1 cut(s) 171
BsiSI CCGG 2 cut(s) 101, 172
BslI CCNNNNNNNGG 3 cut(s) 178, 440, 465
BsmAI GTCTC 1 cut(s) 320
BsnI GGCC 2 cut(s) 13, 458
Bso31I GGTCTC 1 cut(s) 320
Bsp1286I GDGCHC 1 cut(s) 171
Bsp143I GATC 4 cut(s) 137, 160, 333, 426
BspACI CCGC 3 cut(s) 150, 234, 383
BspANI GGCC 2 cut(s) 13, 458
BspCNI CTCAG 1 cut(s) 334
BspHI TCATGA 1 cut(s) 226
BspLI GGNNCC 1 cut(s) 170
BspMAI CTGCAG 1 cut(s) 271
BspPI GGATC 3 cut(s) 145, 341, 434
BspT107I GGYRCC 1 cut(s) 168
BspTNI GGTCTC 1 cut(s) 320
BsrFI RCCGGY 2 cut(s) 100, 171
BsrI ACTGG 1 cut(s) 435
BssAI RCCGGY 2 cut(s) 100, 171
BssMI GATC 4 cut(s) 137, 160, 333, 426
Bst2UI CCWGG 1 cut(s) 460
BstC8I GCNNGC 2 cut(s) 65, 102
BstDEI CTNAG 1 cut(s) 321
BstF5I GGATG 2 cut(s) 10, 377
BstKTI GATC 4 cut(s) 140, 163, 336, 429
BstMAI GTCTC 1 cut(s) 320
BstMBI GATC 4 cut(s) 137, 160, 333, 426
BstMWI GCNNNNNNNGC 3 cut(s) 69, 263, 389
BstNI CCWGG 1 cut(s) 460
BstSCI CCNGG 1 cut(s) 458
BstSFI CTRYAG 1 cut(s) 267
BstSLI GKGCMC 1 cut(s) 171
BstV1I GCAGC 1 cut(s) 253
BstX2I RGATCY 1 cut(s) 426
BstYI RGATCY 1 cut(s) 426
BsuRI GGCC 2 cut(s) 13, 458
BtgZI GCGATG 1 cut(s) 81
BtsCI GGATG 2 cut(s) 10, 377
Cac8I GCNNGC 2 cut(s) 65, 102
CciI TCATGA 1 cut(s) 226
Cfr10I RCCGGY 2 cut(s) 100, 171
Cfr13I GGNCC 1 cut(s) 456
Csp6I GTAC 1 cut(s) 306
CspAI ACCGGT 1 cut(s) 171
CviAII CATG 5 cut(s) 69, 227, 388, 423, 464
CviQI GTAC 1 cut(s) 306
DdeI CTNAG 1 cut(s) 321
DpnI GATC 4 cut(s) 139, 162, 335, 428
DpnII GATC 4 cut(s) 137, 160, 333, 426
EaeI YGGCCR 1 cut(s) 11
Eco31I GGTCTC 1 cut(s) 320
Eco57I CTGAAG 1 cut(s) 180
EcoRII CCWGG 1 cut(s) 458
EcoT22I ATGCAT 1 cut(s) 279
FaeI CATG 5 cut(s) 72, 230, 391, 426, 467
FaiI YATR 9 cut(s) 70, 82, 111, 156, 228, 275, 389, 424, 465
FatI CATG 5 cut(s) 68, 226, 387, 422, 463
Fnu4HI GCNGC 3 cut(s) 151, 235, 267
FokI GGATG 2 cut(s) 17, 384
Fsp4HI GCNGC 3 cut(s) 151, 235, 267
FspBI CTAG 1 cut(s) 490
GluI GCNGC 3 cut(s) 151, 235, 267
GsaI CCCAGC 1 cut(s) 361
HaeIII GGCC 2 cut(s) 13, 458
HapII CCGG 2 cut(s) 101, 172
Hin1II CATG 5 cut(s) 72, 230, 391, 426, 467
HinfI GANTC 1 cut(s) 325
HpaII CCGG 2 cut(s) 101, 172
HphI GGTGA 2 cut(s) 262, 361
Hpy188I TCNGA 2 cut(s) 282, 324
Hpy188III TCNNGA 3 cut(s) 44, 135, 227
Hpy99I CGWCG 2 cut(s) 145, 341
HpyCH4IV ACGT 1 cut(s) 308
HpyCH4V TGCA 3 cut(s) 269, 277, 422
HpyF10VI GCNNNNNNNGC 3 cut(s) 69, 263, 389
HpyF3I CTNAG 1 cut(s) 321
HpySE526I ACGT 1 cut(s) 308
Hsp92II CATG 5 cut(s) 72, 230, 391, 426, 467
KroI GCCGGC 1 cut(s) 100
KroNI GCCGGC 1 cut(s) 102
Kzo9I GATC 4 cut(s) 137, 160, 333, 426
LmnI GCTCC 1 cut(s) 480
Lsp1109I GCAGC 1 cut(s) 253
LweI GCATC 1 cut(s) 286
MaeI CTAG 1 cut(s) 490
MaeII ACGT 1 cut(s) 308
MaeIII GTNAC 1 cut(s) 250
MalI GATC 4 cut(s) 139, 162, 335, 428
MboI GATC 4 cut(s) 137, 160, 333, 426
MboII GAAGA 1 cut(s) 207
MflI RGATCY 1 cut(s) 426
MhlI GDGCHC 1 cut(s) 171
MluCI AATT 4 cut(s) 22, 47, 89, 221
MlyI GAGTC 1 cut(s) 319
MnlI CCTC 5 cut(s) 111, 183, 235, 394, 434
Mph1103I ATGCAT 1 cut(s) 279
MroNI GCCGGC 1 cut(s) 100
MspA1I CMGCKG 1 cut(s) 417
MspI CCGG 2 cut(s) 101, 172
MspR9I CCNGG 1 cut(s) 460
MvaI CCWGG 1 cut(s) 460
MwoI GCNNNNNNNGC 3 cut(s) 69, 263, 389
NaeI GCCGGC 1 cut(s) 102
NdeII GATC 4 cut(s) 137, 160, 333, 426
NgoMIV GCCGGC 1 cut(s) 100
NlaIII CATG 5 cut(s) 72, 230, 391, 426, 467
NlaIV GGNNCC 1 cut(s) 170
NmuCI GTSAC 1 cut(s) 250
NsiI ATGCAT 1 cut(s) 279
PagI TCATGA 1 cut(s) 226
PdiI GCCGGC 1 cut(s) 102
PinAI ACCGGT 1 cut(s) 171
PkrI GCNGC 3 cut(s) 152, 236, 268
PleI GAGTC 1 cut(s) 319
PpsI GAGTC 1 cut(s) 319
Psp6I CCWGG 1 cut(s) 458
PspFI CCCAGC 1 cut(s) 357
PspGI CCWGG 1 cut(s) 458
PspN4I GGNNCC 1 cut(s) 170
PspPI GGNCC 1 cut(s) 456
PstI CTGCAG 1 cut(s) 271
PsuI RGATCY 1 cut(s) 426
PvuII CAGCTG 1 cut(s) 417
RsaI GTAC 1 cut(s) 307
RsaNI GTAC 1 cut(s) 306
SatI GCNGC 3 cut(s) 151, 235, 267
Sau3AI GATC 4 cut(s) 137, 160, 333, 426
Sau96I GGNCC 1 cut(s) 456
SchI GAGTC 1 cut(s) 319
ScrFI CCNGG 1 cut(s) 460
SduI GDGCHC 1 cut(s) 171
SetI ASST 7 cut(s) 57, 122, 246, 311, 348, 419, 485
SfaNI GCATC 1 cut(s) 286
SfcI CTRYAG 1 cut(s) 267
Sse9I AATT 4 cut(s) 22, 47, 89, 221
SsiI CCGC 3 cut(s) 150, 234, 383
SspMI CTAG 1 cut(s) 490
StyD4I CCNGG 1 cut(s) 458
TaiI ACGT 1 cut(s) 311
TaqI TCGA 1 cut(s) 43
TasI AATT 4 cut(s) 22, 47, 89, 221
TauI GCSGC 2 cut(s) 153, 237
TseFI GTSAC 1 cut(s) 250
TseI GCWGC 1 cut(s) 266
Tsp45I GTSAC 1 cut(s) 250
TspDTI ATGAA 1 cut(s) 215
XapI RAATTY 2 cut(s) 47, 221
XcmI CCANNNNNNNNNTGG 1 cut(s) 21
XspI CTAG 1 cut(s) 490
Zsp2I ATGCAT 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.