Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0005556

Physical Location & Seq

Genomic Coordinates Reverse (-)

32168559 .. 32170452

Gene Structure 1894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008562

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGAGCATCTGCTCGAAGATGAGGATATTGTTCAGATTATCAAAAAGGCTTTATCATTTTTGAAATTGCAGAAGGGCAATCAAATGCCTGAAGATTACCCCAGATCTTTTAGAGAAGCAGCTGCAGTTTTCCAACATGCTCAAGTATACGACTCTGACAAGAAAATTGTCAAGCATATGAGACCCATACCACAAGAGCTTATGGATTCCCTTGATGGAGAACTTGATTTCCTTGGATCAGAAATCCCTTCATCAATAGTCATTGCAATTGCTGAAGGAAAATTGGACCCCATAAGTATGGAGGCCTTTGATCATTTCCCTAGTTCCATTTCTAGACATCGGTTAGATCCCATTAAGAGCCAAATTACTCATCACTTTCAGAGATCTGAGACTGCTACTGATGGAACTAATGAATTAAATACTTATCTACACAAGTATCGCATAGAGTTGGATCAACATCTTGGTGCTCGTGTGGGGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03430 map03430

Pfam Domains

Protein Families

XPG_I XPG_N

Protein Analysis

161

Amino Acids

18.35

Weight (kDa)

5.68

Isoelectric Point (pI)

34.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0342681 RchiOBHm_Chr4g0385031
rosa_laevigata	RLG00000008562 RLG00000014249 RLG00000030660
rosa_multiflora	Rmu_sc0000230.1_g000007 Rmu_sc0003052.1_g000011 Rmu_sc0006159.1_g000013 Rmu_sc0008336.1_g000014 Rmu_sc0010676.1_g000001 Rmu_sc0018406.1_g000002
rosa_roxburghii	Rroxscaffold_2G00116070 Rroxscaffold_7G00190900
rosa_rugosa	Rorug02G0507600
rosa_samantha	Rh2DG203900 Rh3DG272000 Rh4AG220600 Rh4CG002500 Rh4CG169000 Rh5AG255100 Rh5BG250800 Rh6BG140300 Rh6DG123700 Rh7AG342200 Rh7CG359800 Rh7CG474900
rosa_wichuraiana	Rw2G004640 Rw4G016300 Rw7G002500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	147
AclWI	GGATC	3 cut(s)	244, 341, 459
AcuI	CTGAAG	2 cut(s)	111, 294
AgsI	TTSAA	1 cut(s)	64
AloI	GAACNNNNNNTCC	2 cut(s)	213, 245
AluBI	AGCT	2 cut(s)	122, 199
AluI	AGCT	2 cut(s)	122, 199
Alw21I	GWGCWC	1 cut(s)	469
Alw26I	GTCTC	2 cut(s)	175, 383
AlwI	GGATC	3 cut(s)	244, 341, 459
AoxI	GGCC	1 cut(s)	303
ApeKI	GCWGC	2 cut(s)	119, 122
AspS9I	GGNCC	1 cut(s)	286
AvaII	GGWCC	1 cut(s)	286
BaeI	ACNNNNGTAYC	2 cut(s)	419, 452
BauI	CACGAG	1 cut(s)	468
Bbv12I	GWGCWC	1 cut(s)	469
BbvI	GCAGC	2 cut(s)	109, 131
BccI	CCATC	2 cut(s)	209, 395
BclI	TGATCA	1 cut(s)	310
BcoDI	GTCTC	2 cut(s)	175, 383
BfaI	CTAG	2 cut(s)	321, 333
BfmI	CTRYAG	1 cut(s)	123
BglII	AGATCT	2 cut(s)	104, 383
BisI	GCNGC	2 cut(s)	120, 123
BlsI	GCNGC	2 cut(s)	121, 124
Bme18I	GGWCC	1 cut(s)	286
BmgT120I	GGNCC	1 cut(s)	286
BmiI	GGNNCC	1 cut(s)	288
BmsI	GCATC	1 cut(s)	16
BpuEI	CTTGAG	1 cut(s)	126
BsaBI	GATNNNNATC	1 cut(s)	456
BsaI	GGTCTC	1 cut(s)	175
BsaJI	CCNNGG	1 cut(s)	232
Bse3DI	GCAATG	1 cut(s)	261
Bse8I	GATNNNNATC	1 cut(s)	456
BseDI	CCNNGG	1 cut(s)	232
BseJI	GATNNNNATC	1 cut(s)	456
BseMI	GCAATG	1 cut(s)	261
BseMII	CTCAG	1 cut(s)	378
BseXI	GCAGC	2 cut(s)	109, 131
BshFI	GGCC	1 cut(s)	305
BsiHKAI	GWGCWC	1 cut(s)	469
BsmAI	GTCTC	2 cut(s)	175, 383
BsnI	GGCC	1 cut(s)	305
Bso31I	GGTCTC	1 cut(s)	175
Bsp1286I	GDGCHC	1 cut(s)	469
Bsp143I	GATC	6 cut(s)	104, 236, 310, 346, 383, 451
BspANI	GGCC	1 cut(s)	305
BspCNI	CTCAG	1 cut(s)	379
BspLI	GGNNCC	1 cut(s)	288
BspMAI	CTGCAG	1 cut(s)	127
BspPI	GGATC	3 cut(s)	244, 341, 459
BspTNI	GGTCTC	1 cut(s)	175
BsrDI	GCAATG	1 cut(s)	261
BssECI	CCNNGG	1 cut(s)	232
BssMI	GATC	6 cut(s)	104, 236, 310, 346, 383, 451
BssNAI	GTATAC	1 cut(s)	148
BssSI	CACGAG	1 cut(s)	468
BssT1I	CCWWGG	1 cut(s)	232
Bst1107I	GTATAC	1 cut(s)	148
Bst2BI	CACGAG	1 cut(s)	468
BstDEI	CTNAG	1 cut(s)	387
BstKTI	GATC	6 cut(s)	107, 239, 313, 349, 386, 454
BstMAI	GTCTC	2 cut(s)	175, 383
BstMBI	GATC	6 cut(s)	104, 236, 310, 346, 383, 451
BstNSI	RCATGY	1 cut(s)	140
BstSFI	CTRYAG	1 cut(s)	123
BstV1I	GCAGC	2 cut(s)	109, 131
BstX2I	RGATCY	3 cut(s)	104, 346, 383
BstXI	CCANNNNNNTGG	1 cut(s)	298
BstYI	RGATCY	3 cut(s)	104, 346, 383
BstZ17I	GTATAC	1 cut(s)	148
BsuRI	GGCC	1 cut(s)	305
Cfr13I	GGNCC	1 cut(s)	286
CviAII	CATG	1 cut(s)	137
CviJI	RGCY	5 cut(s)	50, 122, 199, 305, 360
CviKI_1	RGCY	5 cut(s)	50, 122, 199, 305, 360
DdeI	CTNAG	1 cut(s)	387
DpnI	GATC	6 cut(s)	106, 238, 312, 348, 385, 453
DpnII	GATC	6 cut(s)	104, 236, 310, 346, 383, 451
Eco130I	CCWWGG	1 cut(s)	232
Eco147I	AGGCCT	1 cut(s)	305
Eco31I	GGTCTC	1 cut(s)	175
Eco47I	GGWCC	1 cut(s)	286
Eco57I	CTGAAG	2 cut(s)	111, 294
EcoT14I	CCWWGG	1 cut(s)	232
ErhI	CCWWGG	1 cut(s)	232
FaeI	CATG	1 cut(s)	140
FaiI	YATR	9 cut(s)	138, 148, 177, 179, 188, 203, 293, 299, 443
FatI	CATG	1 cut(s)	136
FauNDI	CATATG	1 cut(s)	177
FbaI	TGATCA	1 cut(s)	310
FblI	GTMKAC	1 cut(s)	147
Fnu4HI	GCNGC	2 cut(s)	120, 123
Fsp4HI	GCNGC	2 cut(s)	120, 123
FspBI	CTAG	2 cut(s)	321, 333
GluI	GCNGC	2 cut(s)	120, 123
HaeIII	GGCC	1 cut(s)	305
Hin1II	CATG	1 cut(s)	140
HinfI	GANTC	2 cut(s)	152, 206
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188I	TCNGA	5 cut(s)	36, 157, 241, 381, 388
Hpy188III	TCNNGA	1 cut(s)	333
Hpy8I	GTNNAC	1 cut(s)	148
HpyAV	CCTTC	3 cut(s)	67, 258, 269
HpyCH4V	TGCA	3 cut(s)	70, 125, 266
HpyF3I	CTNAG	1 cut(s)	387
Hsp92II	CATG	1 cut(s)	140
Ksp22I	TGATCA	1 cut(s)	310
Kzo9I	GATC	6 cut(s)	104, 236, 310, 346, 383, 451
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	2 cut(s)	102, 115
Lsp1109I	GCAGC	2 cut(s)	109, 131
LweI	GCATC	1 cut(s)	16
MaeI	CTAG	2 cut(s)	321, 333
MalI	GATC	6 cut(s)	106, 238, 312, 348, 385, 453
MboI	GATC	6 cut(s)	104, 236, 310, 346, 383, 451
MboII	GAAGA	2 cut(s)	29, 104
MfeI	CAATTG	1 cut(s)	267
MflI	RGATCY	3 cut(s)	104, 346, 383
MhlI	GDGCHC	1 cut(s)	469
MluCI	AATT	6 cut(s)	65, 165, 267, 281, 363, 413
MlyI	GAGTC	1 cut(s)	146
MmeI	TCCRAC	2 cut(s)	157, 429
MnlI	CCTC	3 cut(s)	16, 295, 471
MseI	TTAA	2 cut(s)	354, 416
MslI	CAYNNNNRTG	2 cut(s)	296, 462
MspA1I	CMGCKG	1 cut(s)	122
MunI	CAATTG	1 cut(s)	267
NdeI	CATATG	1 cut(s)	177
NdeII	GATC	6 cut(s)	104, 236, 310, 346, 383, 451
NlaIII	CATG	1 cut(s)	140
NlaIV	GGNNCC	1 cut(s)	288
NspI	RCATGY	1 cut(s)	140
PceI	AGGCCT	1 cut(s)	305
PfeI	GAWTC	1 cut(s)	206
PkrI	GCNGC	2 cut(s)	121, 124
PleI	GAGTC	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	146
PspN4I	GGNNCC	1 cut(s)	288
PspPI	GGNCC	1 cut(s)	286
PstI	CTGCAG	1 cut(s)	127
PsuI	RGATCY	3 cut(s)	104, 346, 383
PvuII	CAGCTG	1 cut(s)	122
RseI	CAYNNNNRTG	2 cut(s)	296, 462
SaqAI	TTAA	2 cut(s)	354, 416
SatI	GCNGC	2 cut(s)	120, 123
Sau3AI	GATC	6 cut(s)	104, 236, 310, 346, 383, 451
Sau96I	GGNCC	1 cut(s)	286
SchI	GAGTC	1 cut(s)	146
SduI	GDGCHC	1 cut(s)	469
SetI	ASST	3 cut(s)	124, 201, 482
SfaNI	GCATC	1 cut(s)	16
SfcI	CTRYAG	1 cut(s)	123
SinI	GGWCC	1 cut(s)	286
SmiMI	CAYNNNNRTG	2 cut(s)	296, 462
SmlI	CTYRAG	1 cut(s)	141
SmoI	CTYRAG	1 cut(s)	141
Sse9I	AATT	6 cut(s)	65, 165, 267, 281, 363, 413
SseBI	AGGCCT	1 cut(s)	305
SspMI	CTAG	2 cut(s)	321, 333
StuI	AGGCCT	1 cut(s)	305
StyI	CCWWGG	1 cut(s)	232
TaqI	TCGA	1 cut(s)	15
TasI	AATT	6 cut(s)	65, 165, 267, 281, 363, 413
TfiI	GAWTC	1 cut(s)	206
Tru1I	TTAA	2 cut(s)	354, 416
Tru9I	TTAA	2 cut(s)	354, 416
TseI	GCWGC	2 cut(s)	119, 122
TspDTI	ATGAA	2 cut(s)	240, 426
VpaK11BI	GGWCC	1 cut(s)	286
XbaI	TCTAGA	1 cut(s)	332
XceI	RCATGY	1 cut(s)	140
XmiI	GTMKAC	1 cut(s)	147
XspI	CTAG	2 cut(s)	321, 333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.