Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0005556

Physical Location & Seq

Genomic Coordinates Forward (+)

30901676 .. 30921190

Gene Structure 19515 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG250800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGCAGCAAATGGGACCAACCTGCACATGGCTTTATCAGTTTTGAAATTGCAGAAGGGCAATCAAATGCCTGAAGATTACCCCAGATCTTTCAGAGAAGCAACTGCAGTTTTCCAGCACGCTCAAGTATACGACTCTGACAAGAAAATTGTCAAGCATATGAGACCCATACCACAAGAGCTTGTGGAGTCCCTTGATGGAGAACTTGATTTCCTTGGATCCCCAACAAAAGAGTACGTGGAGAAATCATGCTTTGTACCTAACCCTTCCGACGTGGGTTATTCTCTACGCCCTTCATCGGACTTCAGGGTGGAAGACAAATCGAGAATGGCTAGTGGTGCAAGTTGTTCGAGGAGCTTTTTACACTATCATGGTGTATGTACGGAATTTGAGGTGGTGGACAAATCAGGGACGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03430 map03430

Pfam Domains

Protein Families

XPG_I XPG_N

Protein Analysis

139

Amino Acids

15.54

Weight (kDa)

5.93

Isoelectric Point (pI)

47.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0342681 RchiOBHm_Chr4g0385031
rosa_laevigata	RLG00000008562 RLG00000014249 RLG00000030660
rosa_multiflora	Rmu_sc0000230.1_g000007 Rmu_sc0003052.1_g000011 Rmu_sc0006159.1_g000013 Rmu_sc0008336.1_g000014 Rmu_sc0010676.1_g000001 Rmu_sc0018406.1_g000002
rosa_roxburghii	Rroxscaffold_2G00116070 Rroxscaffold_7G00190900
rosa_rugosa	Rorug02G0507600
rosa_samantha	Rh2DG203900 Rh3DG272000 Rh4AG220600 Rh4CG002500 Rh4CG169000 Rh5AG255100 Rh5BG250800 Rh6BG140300 Rh6DG123700 Rh7AG342200 Rh7CG359800 Rh7CG474900
rosa_wichuraiana	Rw2G004640 Rw4G016300 Rw7G002500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	30
AccI	GTMKAC	1 cut(s)	129
AclWI	GGATC	2 cut(s)	213, 226
AcsI	RAATTY	1 cut(s)	386
AcuI	CTGAAG	2 cut(s)	93, 289
AfaI	GTAC	3 cut(s)	236, 258, 382
AfiI	CCNNNNNNNGG	2 cut(s)	28, 298
AgsI	TTSAA	1 cut(s)	46
AjiI	CACGTC	1 cut(s)	274
AloI	GAACNNNNNNTCC	2 cut(s)	195, 227
AluBI	AGCT	2 cut(s)	181, 357
AluI	AGCT	2 cut(s)	181, 357
Alw26I	GTCTC	1 cut(s)	157
AlwI	GGATC	2 cut(s)	213, 226
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	1 cut(s)	386
AspS9I	GGNCC	1 cut(s)	15
AvaII	GGWCC	1 cut(s)	15
BamHI	GGATCC	1 cut(s)	218
BbsI	GAAGAC	1 cut(s)	321
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	1 cut(s)	191
BcgI	CGANNNNNNTGC	2 cut(s)	330, 364
BcoDI	GTCTC	1 cut(s)	157
BfaI	CTAG	1 cut(s)	333
BfmI	CTRYAG	1 cut(s)	105
BfuAI	ACCTGC	1 cut(s)	30
BglII	AGATCT	1 cut(s)	86
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme18I	GGWCC	1 cut(s)	15
BmgBI	CACGTC	1 cut(s)	274
BmgT120I	GGNCC	1 cut(s)	15
BmiI	GGNNCC	2 cut(s)	16, 220
BpiI	GAAGAC	1 cut(s)	321
BpuEI	CTTGAG	1 cut(s)	108
BsaAI	YACGTR	1 cut(s)	238
BsaI	GGTCTC	1 cut(s)	157
BsaJI	CCNNGG	1 cut(s)	214
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 298
BseDI	CCNNGG	1 cut(s)	214
BseLI	CCNNNNNNNGG	2 cut(s)	28, 298
BseRI	GAGGAG	1 cut(s)	367
BseXI	GCAGC	1 cut(s)	17
BsgI	GTGCAG	1 cut(s)	8
BslFI	GGGAC	2 cut(s)	28, 175
BslI	CCNNNNNNNGG	2 cut(s)	28, 298
BsmAI	GTCTC	1 cut(s)	157
BsmFI	GGGAC	2 cut(s)	28, 175
Bso31I	GGTCTC	1 cut(s)	157
Bsp143I	GATC	2 cut(s)	86, 218
BspLI	GGNNCC	2 cut(s)	16, 220
BspMAI	CTGCAG	1 cut(s)	109
BspMI	ACCTGC	1 cut(s)	30
BspPI	GGATC	2 cut(s)	213, 226
BspTNI	GGTCTC	1 cut(s)	157
BssECI	CCNNGG	1 cut(s)	214
BssMI	GATC	2 cut(s)	86, 218
BssNAI	GTATAC	1 cut(s)	130
BssT1I	CCWWGG	1 cut(s)	214
Bst1107I	GTATAC	1 cut(s)	130
BstBAI	YACGTR	1 cut(s)	238
BstC8I	GCNNGC	1 cut(s)	120
BstKTI	GATC	2 cut(s)	89, 221
BstMAI	GTCTC	1 cut(s)	157
BstMBI	GATC	2 cut(s)	86, 218
BstMWI	GCNNNNNNNGC	1 cut(s)	338
BstSFI	CTRYAG	1 cut(s)	105
BstV1I	GCAGC	1 cut(s)	17
BstV2I	GAAGAC	1 cut(s)	321
BstX2I	RGATCY	2 cut(s)	86, 218
BstYI	RGATCY	2 cut(s)	86, 218
BstZ17I	GTATAC	1 cut(s)	130
BtrI	CACGTC	1 cut(s)	274
BveI	ACCTGC	1 cut(s)	30
Cac8I	GCNNGC	1 cut(s)	120
Cfr13I	GGNCC	1 cut(s)	15
Csp6I	GTAC	3 cut(s)	235, 257, 381
CviAII	CATG	3 cut(s)	28, 249, 371
CviJI	RGCY	4 cut(s)	32, 181, 332, 357
CviKI_1	RGCY	4 cut(s)	32, 181, 332, 357
CviQI	GTAC	3 cut(s)	235, 257, 381
DpnI	GATC	2 cut(s)	88, 220
DpnII	GATC	2 cut(s)	86, 218
Eco130I	CCWWGG	1 cut(s)	214
Eco31I	GGTCTC	1 cut(s)	157
Eco47I	GGWCC	1 cut(s)	15
Eco57I	CTGAAG	2 cut(s)	93, 289
EcoT14I	CCWWGG	1 cut(s)	214
ErhI	CCWWGG	1 cut(s)	214
FaeI	CATG	3 cut(s)	31, 252, 374
FaiI	YATR	8 cut(s)	29, 130, 159, 161, 170, 250, 372, 379
FaqI	GGGAC	2 cut(s)	28, 175
FatI	CATG	3 cut(s)	27, 248, 370
FauNDI	CATATG	1 cut(s)	159
FblI	GTMKAC	1 cut(s)	129
Fnu4HI	GCNGC	1 cut(s)	6
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	1 cut(s)	333
GluI	GCNGC	1 cut(s)	6
Hin1II	CATG	3 cut(s)	31, 252, 374
HinfI	GANTC	2 cut(s)	134, 188
Hpy166II	GTNNAC	2 cut(s)	130, 400
Hpy188I	TCNGA	4 cut(s)	95, 139, 271, 301
Hpy188III	TCNNGA	1 cut(s)	324
Hpy8I	GTNNAC	2 cut(s)	130, 400
Hpy99I	CGWCG	1 cut(s)	275
HpyAV	CCTTC	3 cut(s)	49, 276, 303
HpyCH4IV	ACGT	2 cut(s)	237, 273
HpyCH4V	TGCA	4 cut(s)	25, 52, 107, 341
HpyF10VI	GCNNNNNNNGC	1 cut(s)	338
HpySE526I	ACGT	2 cut(s)	237, 273
Hsp92II	CATG	3 cut(s)	31, 252, 374
Kzo9I	GATC	2 cut(s)	86, 218
LmnI	GCTCC	1 cut(s)	354
LpnPI	CCDG	6 cut(s)	35, 84, 97, 128, 292, 393
Lsp1109I	GCAGC	1 cut(s)	17
MaeI	CTAG	1 cut(s)	333
MaeII	ACGT	2 cut(s)	237, 273
MalI	GATC	2 cut(s)	88, 220
MboI	GATC	2 cut(s)	86, 218
MboII	GAAGA	2 cut(s)	86, 326
MflI	RGATCY	2 cut(s)	86, 218
MluCI	AATT	3 cut(s)	47, 147, 386
MlyI	GAGTC	2 cut(s)	128, 197
MmeI	TCCRAC	1 cut(s)	294
MnlI	CCTC	2 cut(s)	345, 385
MslI	CAYNNNNRTG	1 cut(s)	369
MwoI	GCNNNNNNNGC	1 cut(s)	338
NdeI	CATATG	1 cut(s)	159
NdeII	GATC	2 cut(s)	86, 218
NlaIII	CATG	3 cut(s)	31, 252, 374
NlaIV	GGNNCC	2 cut(s)	16, 220
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	2 cut(s)	128, 196
PpsI	GAGTC	2 cut(s)	128, 196
Ppu21I	YACGTR	1 cut(s)	238
PspN4I	GGNNCC	2 cut(s)	16, 220
PspPI	GGNCC	1 cut(s)	15
PstI	CTGCAG	1 cut(s)	109
PsuI	RGATCY	2 cut(s)	86, 218
RsaI	GTAC	3 cut(s)	236, 258, 382
RsaNI	GTAC	3 cut(s)	235, 257, 381
RseI	CAYNNNNRTG	1 cut(s)	369
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	2 cut(s)	86, 218
Sau96I	GGNCC	1 cut(s)	15
SchI	GAGTC	2 cut(s)	128, 197
SetI	ASST	7 cut(s)	24, 183, 240, 262, 276, 359, 396
SfcI	CTRYAG	1 cut(s)	105
SinI	GGWCC	1 cut(s)	15
SmiMI	CAYNNNNRTG	1 cut(s)	369
SmlI	CTYRAG	1 cut(s)	123
SmoI	CTYRAG	1 cut(s)	123
Sse9I	AATT	3 cut(s)	47, 147, 386
SspMI	CTAG	1 cut(s)	333
StyI	CCWWGG	1 cut(s)	214
TaiI	ACGT	2 cut(s)	240, 276
TaqI	TCGA	2 cut(s)	323, 350
TasI	AATT	3 cut(s)	47, 147, 386
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	1 cut(s)	285
TspGWI	ACGGA	1 cut(s)	398
VpaK11BI	GGWCC	1 cut(s)	15
XapI	RAATTY	1 cut(s)	386
XcmI	CCANNNNNNNNNTGG	1 cut(s)	25
XmiI	GTMKAC	1 cut(s)	129
XspI	CTAG	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.