Rh5AG255100

exonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0005556
Physical Location & Seq
Forward (+)
33139977 .. 33141067
1091 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG255100.1

Sequence Viewer

Length: 324 bp
ATGCCTGAAGATTATCCCAGATCTTTTAGAGAAGCAGTTGCAGTTTTCCAGCATGCTCAAGTATACGACTCTGACAAGAAAGTTGTCAAGCATATGAGACCCATACCACAAGAGCTGGTGGAGTCCCTTGATGGAGAACTTGATTTCCTTGGATCAGAAATCCCTTCATCAATAGCCATTGCAATTGCTGAAGGAAAATTGGACCCCATAAGAATTGAGGATGGAACTGATGAATTAAATACTTATCTACACAAGTATCACATAGAGTTGGATCAACATCTTGGTGCTCTTGTGGGGAGCCATGGCAATAAGACCAGCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03430 map03430
Pfam Domains
Protein Families
XPG_I XPG_N

Protein Analysis

107

Amino Acids

12.03

Weight (kDa)

4.94

Isoelectric Point (pI)

47.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 63
AclWI GGATC 2 cut(s) 160, 279
AcuI CTGAAG 2 cut(s) 27, 210
AloI GAACNNNNNNTCC 2 cut(s) 129, 161
AluBI AGCT 2 cut(s) 115, 318
AluI AGCT 2 cut(s) 115, 318
Alw21I GWGCWC 1 cut(s) 289
Alw26I GTCTC 1 cut(s) 91
AlwI GGATC 2 cut(s) 160, 279
AlwNI CAGNNNCTG 1 cut(s) 321
AspS9I GGNCC 1 cut(s) 202
AvaII GGWCC 1 cut(s) 202
BaeI ACNNNNGTAYC 2 cut(s) 239, 272
Bbv12I GWGCWC 1 cut(s) 289
BccI CCATC 2 cut(s) 125, 215
BcoDI GTCTC 1 cut(s) 91
BglII AGATCT 1 cut(s) 20
Bme18I GGWCC 1 cut(s) 202
BmgT120I GGNCC 1 cut(s) 202
BmiI GGNNCC 2 cut(s) 204, 299
BpuEI CTTGAG 1 cut(s) 42
BsaBI GATNNNNATC 1 cut(s) 276
BsaI GGTCTC 1 cut(s) 91
BsaJI CCNNGG 2 cut(s) 148, 301
Bse3DI GCAATG 1 cut(s) 177
Bse8I GATNNNNATC 1 cut(s) 276
BseDI CCNNGG 2 cut(s) 148, 301
BseGI GGATG 1 cut(s) 226
BseJI GATNNNNATC 1 cut(s) 276
BseMI GCAATG 1 cut(s) 177
BsiHKAI GWGCWC 1 cut(s) 289
BslFI GGGAC 1 cut(s) 109
BsmAI GTCTC 1 cut(s) 91
BsmFI GGGAC 1 cut(s) 109
Bso31I GGTCTC 1 cut(s) 91
Bsp1286I GDGCHC 1 cut(s) 289
Bsp143I GATC 3 cut(s) 20, 152, 271
Bsp19I CCATGG 1 cut(s) 301
BspLI GGNNCC 2 cut(s) 204, 299
BspPI GGATC 2 cut(s) 160, 279
BspTNI GGTCTC 1 cut(s) 91
BsrDI GCAATG 1 cut(s) 177
BssECI CCNNGG 2 cut(s) 148, 301
BssMI GATC 3 cut(s) 20, 152, 271
BssNAI GTATAC 1 cut(s) 64
BssT1I CCWWGG 2 cut(s) 148, 301
Bst1107I GTATAC 1 cut(s) 64
BstC8I GCNNGC 1 cut(s) 54
BstDSI CCRYGG 1 cut(s) 301
BstF5I GGATG 1 cut(s) 226
BstKTI GATC 3 cut(s) 23, 155, 274
BstMAI GTCTC 1 cut(s) 91
BstMBI GATC 3 cut(s) 20, 152, 271
BstNSI RCATGY 1 cut(s) 56
BstX2I RGATCY 1 cut(s) 20
BstYI RGATCY 1 cut(s) 20
BstZ17I GTATAC 1 cut(s) 64
BtgI CCRYGG 1 cut(s) 301
BtsCI GGATG 1 cut(s) 226
Cac8I GCNNGC 1 cut(s) 54
CaiI CAGNNNCTG 1 cut(s) 321
Cfr13I GGNCC 1 cut(s) 202
CviAII CATG 2 cut(s) 53, 302
CviJI RGCY 4 cut(s) 115, 176, 300, 318
CviKI_1 RGCY 4 cut(s) 115, 176, 300, 318
DpnI GATC 3 cut(s) 22, 154, 273
DpnII GATC 3 cut(s) 20, 152, 271
Eco130I CCWWGG 2 cut(s) 148, 301
Eco31I GGTCTC 1 cut(s) 91
Eco47I GGWCC 1 cut(s) 202
Eco57I CTGAAG 2 cut(s) 27, 210
EcoT14I CCWWGG 2 cut(s) 148, 301
ErhI CCWWGG 2 cut(s) 148, 301
FaeI CATG 2 cut(s) 56, 305
FaiI YATR 8 cut(s) 54, 64, 93, 95, 104, 209, 263, 303
FaqI GGGAC 1 cut(s) 109
FatI CATG 2 cut(s) 52, 301
FauNDI CATATG 1 cut(s) 93
FblI GTMKAC 1 cut(s) 63
FokI GGATG 1 cut(s) 233
Hin1II CATG 2 cut(s) 56, 305
HinfI GANTC 2 cut(s) 68, 122
Hpy166II GTNNAC 1 cut(s) 64
Hpy188I TCNGA 2 cut(s) 73, 157
Hpy8I GTNNAC 1 cut(s) 64
HpyAV CCTTC 2 cut(s) 174, 185
HpyCH4V TGCA 2 cut(s) 41, 182
Hsp92II CATG 2 cut(s) 56, 305
Kzo9I GATC 3 cut(s) 20, 152, 271
LmnI GCTCC 1 cut(s) 297
LpnPI CCDG 4 cut(s) 18, 31, 62, 101
MalI GATC 3 cut(s) 22, 154, 273
MboI GATC 3 cut(s) 20, 152, 271
MboII GAAGA 1 cut(s) 20
MfeI CAATTG 1 cut(s) 183
MflI RGATCY 1 cut(s) 20
MhlI GDGCHC 1 cut(s) 289
MluCI AATT 4 cut(s) 183, 197, 213, 233
MlyI GAGTC 2 cut(s) 62, 131
MmeI TCCRAC 1 cut(s) 249
MnlI CCTC 1 cut(s) 211
MseI TTAA 1 cut(s) 236
MslI CAYNNNNRTG 1 cut(s) 282
MunI CAATTG 1 cut(s) 183
NcoI CCATGG 1 cut(s) 301
NdeI CATATG 1 cut(s) 93
NdeII GATC 3 cut(s) 20, 152, 271
NlaIII CATG 2 cut(s) 56, 305
NlaIV GGNNCC 2 cut(s) 204, 299
NspI RCATGY 1 cut(s) 56
PaeI GCATGC 1 cut(s) 56
PleI GAGTC 2 cut(s) 62, 130
PpsI GAGTC 2 cut(s) 62, 130
PspN4I GGNNCC 2 cut(s) 204, 299
PspPI GGNCC 1 cut(s) 202
PstNI CAGNNNCTG 1 cut(s) 321
PsuI RGATCY 1 cut(s) 20
RseI CAYNNNNRTG 1 cut(s) 282
SaqAI TTAA 1 cut(s) 236
Sau3AI GATC 3 cut(s) 20, 152, 271
Sau96I GGNCC 1 cut(s) 202
SchI GAGTC 2 cut(s) 62, 131
SduI GDGCHC 1 cut(s) 289
SetI ASST 2 cut(s) 117, 320
SinI GGWCC 1 cut(s) 202
SmiMI CAYNNNNRTG 1 cut(s) 282
SmlI CTYRAG 1 cut(s) 57
SmoI CTYRAG 1 cut(s) 57
SphI GCATGC 1 cut(s) 56
Sse9I AATT 4 cut(s) 183, 197, 213, 233
StyI CCWWGG 2 cut(s) 148, 301
TasI AATT 4 cut(s) 183, 197, 213, 233
Tru1I TTAA 1 cut(s) 236
Tru9I TTAA 1 cut(s) 236
TspDTI ATGAA 2 cut(s) 156, 246
VpaK11BI GGWCC 1 cut(s) 202
XceI RCATGY 1 cut(s) 56
XmiI GTMKAC 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.