Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0005556

Physical Location & Seq

Genomic Coordinates Reverse (-)

27260197 .. 27267264

Gene Structure 7068 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG272000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGCCGGACACTGCAGGAAAGGTCCGCATGCCCCCAGACAATCGGGTGTCAAGAAATTTTTCAAGTGTGCAAGATGCTTTGTACAATATTACTGGTAGGTTACGAGATAACCTTTTCTCCAACACAGTAAATAATTCTGGAAGGAGGAATAGTTCAGCCGTGCTAACAGATACCAATCCTTATGGAAGACTCAGGGATCCTGCTCCTACTGGATTTCAGCCTTCTTCATCAGTTGGTGTTACTCATGGTCTCGGTCGACATACTACTCTAACTCAAAGTATGGATCATCTTGGACTTTCCCATAATTTAGATCATCCTTCTTCACCAAGGCCATGGGCATCACAGATGGTTGCTTCAAGGGGAATCTCAGATACTAGCAGGGGTTTGACTTCTCTTAAAAGTGGCTCGGATCTTGGTAGGTCCGGATTCTTACTTGACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0007275 GO:0008150 GO:0009791 GO:0009908 GO:0009909 GO:0009911 GO:0016604 GO:0016607 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045595 GO:0045596 GO:0048367 GO:0048437 GO:0048497 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051094 GO:0051239 GO:0051240 GO:0061458 GO:0065007 GO:0070013 GO:0090567 GO:0090700 GO:0099402 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

147

Amino Acids

15.85

Weight (kDa)

10.7

Isoelectric Point (pI)

44.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0342681 RchiOBHm_Chr4g0385031
rosa_laevigata	RLG00000008562 RLG00000014249 RLG00000030660
rosa_multiflora	Rmu_sc0000230.1_g000007 Rmu_sc0003052.1_g000011 Rmu_sc0006159.1_g000013 Rmu_sc0008336.1_g000014 Rmu_sc0010676.1_g000001 Rmu_sc0018406.1_g000002
rosa_roxburghii	Rroxscaffold_2G00116070 Rroxscaffold_7G00190900
rosa_rugosa	Rorug02G0507600
rosa_samantha	Rh2DG203900 Rh3DG272000 Rh4AG220600 Rh4CG002500 Rh4CG169000 Rh5AG255100 Rh5BG250800 Rh6BG140300 Rh6DG123700 Rh7AG342200 Rh7CG359800 Rh7CG474900
rosa_wichuraiana	Rw2G004640 Rw4G016300 Rw7G002500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	256
AccIII	TCCGGA	1 cut(s)	422
AciI	CCGC	1 cut(s)	25
AclWI	GGATC	4 cut(s)	191, 204, 291, 417
AcsI	RAATTY	1 cut(s)	55
AfaI	GTAC	1 cut(s)	83
AgsI	TTSAA	2 cut(s)	63, 357
AloI	GAACNNNNNNTCC	2 cut(s)	136, 168
Alw26I	GTCTC	1 cut(s)	254
AlwI	GGATC	4 cut(s)	191, 204, 291, 417
Aor13HI	TCCGGA	1 cut(s)	422
AoxI	GGCC	1 cut(s)	329
ApoI	RAATTY	1 cut(s)	55
Asp700I	GAANNNNTTC	1 cut(s)	58
AspS9I	GGNCC	2 cut(s)	22, 420
AsuHPI	GGTGA	1 cut(s)	315
AvaII	GGWCC	2 cut(s)	22, 420
BamHI	GGATCC	1 cut(s)	196
BbsI	GAAGAC	1 cut(s)	193
BccI	CCATC	1 cut(s)	340
BceAI	ACGGC	1 cut(s)	143
BcoDI	GTCTC	1 cut(s)	254
BfaI	CTAG	1 cut(s)	375
BfmI	CTRYAG	1 cut(s)	12
Bme18I	GGWCC	2 cut(s)	22, 420
BmgT120I	GGNCC	2 cut(s)	22, 420
BmiI	GGNNCC	1 cut(s)	198
BmsI	GCATC	2 cut(s)	64, 347
BpiI	GAAGAC	1 cut(s)	193
BsaBI	GATNNNNATC	1 cut(s)	174
BsaI	GGTCTC	1 cut(s)	254
BsaJI	CCNNGG	2 cut(s)	326, 332
BsaWI	WCCGGW	1 cut(s)	422
BsaXI	ACNNNNNCTCC	4 cut(s)	101, 131, 136, 166
Bse1I	ACTGG	2 cut(s)	97, 214
Bse8I	GATNNNNATC	1 cut(s)	174
BseAI	TCCGGA	1 cut(s)	422
BseDI	CCNNGG	2 cut(s)	326, 332
BseGI	GGATG	1 cut(s)	313
BseJI	GATNNNNATC	1 cut(s)	174
BseMII	CTCAG	2 cut(s)	205, 381
BseNI	ACTGG	2 cut(s)	97, 214
Bsh1285I	CGRYCG	1 cut(s)	256
BshFI	GGCC	1 cut(s)	331
BsiEI	CGRYCG	1 cut(s)	256
BsiSI	CCGG	2 cut(s)	5, 423
BsmAI	GTCTC	1 cut(s)	254
BsnI	GGCC	1 cut(s)	331
Bso31I	GGTCTC	1 cut(s)	254
Bsp13I	TCCGGA	1 cut(s)	422
Bsp1407I	TGTACA	1 cut(s)	81
Bsp143I	GATC	4 cut(s)	196, 283, 310, 409
Bsp19I	CCATGG	1 cut(s)	332
BspACI	CCGC	1 cut(s)	25
BspANI	GGCC	1 cut(s)	331
BspCNI	CTCAG	2 cut(s)	204, 380
BspEI	TCCGGA	1 cut(s)	422
BspLI	GGNNCC	1 cut(s)	198
BspMAI	CTGCAG	1 cut(s)	16
BspPI	GGATC	4 cut(s)	191, 204, 291, 417
BspTNI	GGTCTC	1 cut(s)	254
BsrGI	TGTACA	1 cut(s)	81
BsrI	ACTGG	2 cut(s)	97, 214
BssECI	CCNNGG	2 cut(s)	326, 332
BssMI	GATC	4 cut(s)	196, 283, 310, 409
BssT1I	CCWWGG	2 cut(s)	326, 332
Bst4CI	ACNGT	1 cut(s)	127
BstAUI	TGTACA	1 cut(s)	81
BstC8I	GCNNGC	1 cut(s)	29
BstDEI	CTNAG	2 cut(s)	191, 367
BstDSI	CCRYGG	1 cut(s)	332
BstF5I	GGATG	1 cut(s)	313
BstKTI	GATC	4 cut(s)	199, 286, 313, 412
BstMAI	GTCTC	1 cut(s)	254
BstMBI	GATC	4 cut(s)	196, 283, 310, 409
BstMCI	CGRYCG	1 cut(s)	256
BstNSI	RCATGY	1 cut(s)	31
BstSFI	CTRYAG	1 cut(s)	12
BstV2I	GAAGAC	1 cut(s)	193
BstX2I	RGATCY	2 cut(s)	196, 409
BstXI	CCANNNNNNTGG	1 cut(s)	333
BstYI	RGATCY	2 cut(s)	196, 409
BsuRI	GGCC	1 cut(s)	331
BtgI	CCRYGG	1 cut(s)	332
BtsCI	GGATG	1 cut(s)	313
BtsI	GCAGTG	1 cut(s)	9
BtsIMutI	CAGTG	1 cut(s)	9
Cac8I	GCNNGC	1 cut(s)	29
Cfr13I	GGNCC	2 cut(s)	22, 420
Csp6I	GTAC	1 cut(s)	82
CviAII	CATG	3 cut(s)	28, 245, 333
CviJI	RGCY	4 cut(s)	158, 220, 331, 405
CviKI_1	RGCY	4 cut(s)	158, 220, 331, 405
CviQI	GTAC	1 cut(s)	82
DdeI	CTNAG	2 cut(s)	191, 367
DpnI	GATC	4 cut(s)	198, 285, 312, 411
DpnII	GATC	4 cut(s)	196, 283, 310, 409
Eco130I	CCWWGG	2 cut(s)	326, 332
Eco31I	GGTCTC	1 cut(s)	254
Eco47I	GGWCC	2 cut(s)	22, 420
EcoT14I	CCWWGG	2 cut(s)	326, 332
ErhI	CCWWGG	2 cut(s)	326, 332
FaeI	CATG	3 cut(s)	31, 248, 336
FaiI	YATR	7 cut(s)	29, 183, 246, 261, 281, 303, 334
FatI	CATG	3 cut(s)	27, 244, 332
FblI	GTMKAC	1 cut(s)	256
FokI	GGATG	1 cut(s)	300
FspBI	CTAG	1 cut(s)	375
HaeIII	GGCC	1 cut(s)	331
HapII	CCGG	2 cut(s)	5, 423
Hin1II	CATG	3 cut(s)	31, 248, 336
HincII	GTYRAC	1 cut(s)	257
HindII	GTYRAC	1 cut(s)	257
HinfI	GANTC	3 cut(s)	189, 363, 426
HpaII	CCGG	2 cut(s)	5, 423
HphI	GGTGA	1 cut(s)	315
Hpy166II	GTNNAC	1 cut(s)	257
Hpy188I	TCNGA	2 cut(s)	370, 409
Hpy188III	TCNNGA	3 cut(s)	51, 138, 423
Hpy8I	GTNNAC	1 cut(s)	257
HpyAV	CCTTC	3 cut(s)	135, 231, 327
HpyCH4III	ACNGT	1 cut(s)	127
HpyCH4V	TGCA	2 cut(s)	14, 70
HpyF3I	CTNAG	2 cut(s)	191, 367
Hsp92II	CATG	3 cut(s)	31, 248, 336
Kpn2I	TCCGGA	1 cut(s)	422
Kzo9I	GATC	4 cut(s)	196, 283, 310, 409
LmnI	GCTCC	1 cut(s)	208
LpnPI	CCDG	9 cut(s)	18, 48, 78, 123, 178, 195, 213, 364, 436
LweI	GCATC	2 cut(s)	64, 347
MaeI	CTAG	1 cut(s)	375
MaeIII	GTNAC	2 cut(s)	99, 238
MalI	GATC	4 cut(s)	198, 285, 312, 411
MboI	GATC	4 cut(s)	196, 283, 310, 409
MboII	GAAGA	3 cut(s)	198, 216, 312
MflI	RGATCY	2 cut(s)	196, 409
MluCI	AATT	3 cut(s)	55, 133, 304
MlyI	GAGTC	1 cut(s)	183
MmeI	TCCRAC	1 cut(s)	144
MnlI	CCTC	1 cut(s)	138
MroI	TCCGGA	1 cut(s)	422
MroXI	GAANNNNTTC	1 cut(s)	58
MseI	TTAA	1 cut(s)	396
MspI	CCGG	2 cut(s)	5, 423
NcoI	CCATGG	1 cut(s)	332
NdeII	GATC	4 cut(s)	196, 283, 310, 409
NlaIII	CATG	3 cut(s)	31, 248, 336
NlaIV	GGNNCC	1 cut(s)	198
NspI	RCATGY	1 cut(s)	31
PaeI	GCATGC	1 cut(s)	31
PdmI	GAANNNNTTC	1 cut(s)	58
PfeI	GAWTC	2 cut(s)	363, 426
PleI	GAGTC	1 cut(s)	183
PpsI	GAGTC	1 cut(s)	183
PspN4I	GGNNCC	1 cut(s)	198
PspPI	GGNCC	2 cut(s)	22, 420
PstI	CTGCAG	1 cut(s)	16
PsuI	RGATCY	2 cut(s)	196, 409
RsaI	GTAC	1 cut(s)	83
RsaNI	GTAC	1 cut(s)	82
SalI	GTCGAC	1 cut(s)	255
SaqAI	TTAA	1 cut(s)	396
Sau3AI	GATC	4 cut(s)	196, 283, 310, 409
Sau96I	GGNCC	2 cut(s)	22, 420
SchI	GAGTC	1 cut(s)	183
SetI	ASST	4 cut(s)	24, 101, 114, 422
SfaNI	GCATC	2 cut(s)	64, 347
SfcI	CTRYAG	1 cut(s)	12
SinI	GGWCC	2 cut(s)	22, 420
SphI	GCATGC	1 cut(s)	31
Sse9I	AATT	3 cut(s)	55, 133, 304
SsiI	CCGC	1 cut(s)	25
SspI	AATATT	1 cut(s)	88
SspMI	CTAG	1 cut(s)	375
StyI	CCWWGG	2 cut(s)	326, 332
TaaI	ACNGT	1 cut(s)	127
TaqI	TCGA	1 cut(s)	256
TaqII	GACCGA	1 cut(s)	242
TasI	AATT	3 cut(s)	55, 133, 304
TatI	WGTACW	1 cut(s)	81
TfiI	GAWTC	2 cut(s)	363, 426
Tru1I	TTAA	1 cut(s)	396
Tru9I	TTAA	1 cut(s)	396
TscAI	CASTG	1 cut(s)	16
TspDTI	ATGAA	1 cut(s)	216
TspRI	CASTG	1 cut(s)	16
VpaK11BI	GGWCC	2 cut(s)	22, 420
XapI	RAATTY	1 cut(s)	55
XceI	RCATGY	1 cut(s)	31
XmiI	GTMKAC	1 cut(s)	256
XmnI	GAANNNNTTC	1 cut(s)	58
XspI	CTAG	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.