Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0005556

Physical Location & Seq

Genomic Coordinates Reverse (-)

18993815 .. 18996631

Gene Structure 2817 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG203900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGCCTGAAGATTACCCCAGATCTTTCAGAGAAGCAGCTGCAGTTTTCCAGCATGCTCAAGTATACGACTCTGACAAGAAAATTGTCAAGCATATGAGACCCATACCACAAGAGCTTGTGGAGTCCCTTGATGGAGAACTTGATTTCCTTGGATCGTATTTTTTTGTTATTTATTTCTTGTTGTTGTCAGGCATTGCAATTGCTGAAGGAAAATTGGACCCCATAAGTATGGAGGTCTTTGATCATTTCCCTAGTTCCATTTCTAGACATCGGTCAGATCCCATTAAGAGCCAAATTACTCATCACTTTCAGAGATCTGAGACTGCTACTGTATCTACACAAGAATTTAGGATGGAACTGATGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03430 map03430

Pfam Domains

Protein Families

XPG_I XPG_N

Protein Analysis

122

Amino Acids

14.12

Weight (kDa)

5.42

Isoelectric Point (pI)

40.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0342681 RchiOBHm_Chr4g0385031
rosa_laevigata	RLG00000008562 RLG00000014249 RLG00000030660
rosa_multiflora	Rmu_sc0000230.1_g000007 Rmu_sc0003052.1_g000011 Rmu_sc0006159.1_g000013 Rmu_sc0008336.1_g000014 Rmu_sc0010676.1_g000001 Rmu_sc0018406.1_g000002
rosa_roxburghii	Rroxscaffold_2G00116070 Rroxscaffold_7G00190900
rosa_rugosa	Rorug02G0507600
rosa_samantha	Rh2DG203900 Rh3DG272000 Rh4AG220600 Rh4CG002500 Rh4CG169000 Rh5AG255100 Rh5BG250800 Rh6BG140300 Rh6DG123700 Rh7AG342200 Rh7CG359800 Rh7CG474900
rosa_wichuraiana	Rw2G004640 Rw4G016300 Rw7G002500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	63
AclWI	GGATC	2 cut(s)	160, 272
AcsI	RAATTY	1 cut(s)	344
AcuI	CTGAAG	2 cut(s)	27, 225
AloI	GAACNNNNNNTCC	2 cut(s)	129, 161
AluBI	AGCT	2 cut(s)	38, 115
AluI	AGCT	2 cut(s)	38, 115
Alw26I	GTCTC	2 cut(s)	91, 314
AlwI	GGATC	2 cut(s)	160, 272
ApeKI	GCWGC	2 cut(s)	35, 38
ApoI	RAATTY	1 cut(s)	344
AspS9I	GGNCC	1 cut(s)	217
AvaII	GGWCC	1 cut(s)	217
BbvI	GCAGC	2 cut(s)	25, 47
BccI	CCATC	2 cut(s)	125, 346
BclI	TGATCA	1 cut(s)	241
BcoDI	GTCTC	2 cut(s)	91, 314
BfaI	CTAG	2 cut(s)	252, 264
BfmI	CTRYAG	1 cut(s)	39
BglII	AGATCT	2 cut(s)	20, 314
BisI	GCNGC	2 cut(s)	36, 39
BlsI	GCNGC	2 cut(s)	37, 40
Bme18I	GGWCC	1 cut(s)	217
BmgT120I	GGNCC	1 cut(s)	217
BmiI	GGNNCC	1 cut(s)	219
BoxI	GACNNNNGTC	1 cut(s)	271
BpuEI	CTTGAG	1 cut(s)	42
BsaI	GGTCTC	1 cut(s)	91
BsaJI	CCNNGG	1 cut(s)	148
Bse3DI	GCAATG	1 cut(s)	192
BseDI	CCNNGG	1 cut(s)	148
BseGI	GGATG	1 cut(s)	357
BseMI	GCAATG	1 cut(s)	192
BseMII	CTCAG	1 cut(s)	309
BseXI	GCAGC	2 cut(s)	25, 47
BslFI	GGGAC	1 cut(s)	109
BsmAI	GTCTC	2 cut(s)	91, 314
BsmFI	GGGAC	1 cut(s)	109
Bso31I	GGTCTC	1 cut(s)	91
Bsp143I	GATC	5 cut(s)	20, 152, 241, 277, 314
BspCNI	CTCAG	1 cut(s)	310
BspLI	GGNNCC	1 cut(s)	219
BspMAI	CTGCAG	1 cut(s)	43
BspPI	GGATC	2 cut(s)	160, 272
BspTNI	GGTCTC	1 cut(s)	91
BsrDI	GCAATG	1 cut(s)	192
BssECI	CCNNGG	1 cut(s)	148
BssMI	GATC	5 cut(s)	20, 152, 241, 277, 314
BssNAI	GTATAC	1 cut(s)	64
BssT1I	CCWWGG	1 cut(s)	148
Bst1107I	GTATAC	1 cut(s)	64
Bst4CI	ACNGT	1 cut(s)	331
BstC8I	GCNNGC	1 cut(s)	54
BstDEI	CTNAG	1 cut(s)	318
BstF5I	GGATG	1 cut(s)	357
BstKTI	GATC	5 cut(s)	23, 155, 244, 280, 317
BstMAI	GTCTC	2 cut(s)	91, 314
BstMBI	GATC	5 cut(s)	20, 152, 241, 277, 314
BstNSI	RCATGY	1 cut(s)	56
BstPAI	GACNNNNGTC	1 cut(s)	271
BstSFI	CTRYAG	1 cut(s)	39
BstV1I	GCAGC	2 cut(s)	25, 47
BstX2I	RGATCY	3 cut(s)	20, 277, 314
BstXI	CCANNNNNNTGG	1 cut(s)	229
BstYI	RGATCY	3 cut(s)	20, 277, 314
BstZ17I	GTATAC	1 cut(s)	64
BtsCI	GGATG	1 cut(s)	357
Cac8I	GCNNGC	1 cut(s)	54
Cfr13I	GGNCC	1 cut(s)	217
CviAII	CATG	1 cut(s)	53
CviJI	RGCY	3 cut(s)	38, 115, 291
CviKI_1	RGCY	3 cut(s)	38, 115, 291
DdeI	CTNAG	1 cut(s)	318
DpnI	GATC	5 cut(s)	22, 154, 243, 279, 316
DpnII	GATC	5 cut(s)	20, 152, 241, 277, 314
Eco130I	CCWWGG	1 cut(s)	148
Eco31I	GGTCTC	1 cut(s)	91
Eco47I	GGWCC	1 cut(s)	217
Eco57I	CTGAAG	2 cut(s)	27, 225
EcoT14I	CCWWGG	1 cut(s)	148
ErhI	CCWWGG	1 cut(s)	148
FaeI	CATG	1 cut(s)	56
FaiI	YATR	7 cut(s)	54, 64, 93, 95, 104, 224, 230
FaqI	GGGAC	1 cut(s)	109
FatI	CATG	1 cut(s)	52
FauNDI	CATATG	1 cut(s)	93
FbaI	TGATCA	1 cut(s)	241
FblI	GTMKAC	1 cut(s)	63
Fnu4HI	GCNGC	2 cut(s)	36, 39
FokI	GGATG	1 cut(s)	364
Fsp4HI	GCNGC	2 cut(s)	36, 39
FspBI	CTAG	2 cut(s)	252, 264
GluI	GCNGC	2 cut(s)	36, 39
Hin1II	CATG	1 cut(s)	56
HinfI	GANTC	2 cut(s)	68, 122
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188I	TCNGA	5 cut(s)	29, 73, 277, 312, 319
Hpy188III	TCNNGA	1 cut(s)	264
Hpy8I	GTNNAC	1 cut(s)	64
HpyAV	CCTTC	1 cut(s)	200
HpyCH4III	ACNGT	1 cut(s)	331
HpyCH4V	TGCA	2 cut(s)	41, 197
HpyF3I	CTNAG	1 cut(s)	318
Hsp92II	CATG	1 cut(s)	56
Ksp22I	TGATCA	1 cut(s)	241
Kzo9I	GATC	5 cut(s)	20, 152, 241, 277, 314
LpnPI	CCDG	4 cut(s)	18, 31, 62, 174
Lsp1109I	GCAGC	2 cut(s)	25, 47
MaeI	CTAG	2 cut(s)	252, 264
MalI	GATC	5 cut(s)	22, 154, 243, 279, 316
MboI	GATC	5 cut(s)	20, 152, 241, 277, 314
MboII	GAAGA	1 cut(s)	20
MfeI	CAATTG	1 cut(s)	198
MflI	RGATCY	3 cut(s)	20, 277, 314
MluCI	AATT	6 cut(s)	81, 198, 212, 294, 344, 364
MlyI	GAGTC	2 cut(s)	62, 131
MnlI	CCTC	1 cut(s)	226
MseI	TTAA	2 cut(s)	285, 367
MslI	CAYNNNNRTG	1 cut(s)	227
MspA1I	CMGCKG	1 cut(s)	38
MunI	CAATTG	1 cut(s)	198
NdeI	CATATG	1 cut(s)	93
NdeII	GATC	5 cut(s)	20, 152, 241, 277, 314
NlaIII	CATG	1 cut(s)	56
NlaIV	GGNNCC	1 cut(s)	219
NspI	RCATGY	1 cut(s)	56
PaeI	GCATGC	1 cut(s)	56
PkrI	GCNGC	2 cut(s)	37, 40
PleI	GAGTC	2 cut(s)	62, 130
PpsI	GAGTC	2 cut(s)	62, 130
PshAI	GACNNNNGTC	1 cut(s)	271
PspN4I	GGNNCC	1 cut(s)	219
PspPI	GGNCC	1 cut(s)	217
PstI	CTGCAG	1 cut(s)	43
PsuI	RGATCY	3 cut(s)	20, 277, 314
PvuII	CAGCTG	1 cut(s)	38
RseI	CAYNNNNRTG	1 cut(s)	227
SaqAI	TTAA	2 cut(s)	285, 367
SatI	GCNGC	2 cut(s)	36, 39
Sau3AI	GATC	5 cut(s)	20, 152, 241, 277, 314
Sau96I	GGNCC	1 cut(s)	217
SchI	GAGTC	2 cut(s)	62, 131
SetI	ASST	3 cut(s)	40, 117, 237
SfcI	CTRYAG	1 cut(s)	39
SinI	GGWCC	1 cut(s)	217
SmiMI	CAYNNNNRTG	1 cut(s)	227
SmlI	CTYRAG	1 cut(s)	57
SmoI	CTYRAG	1 cut(s)	57
SphI	GCATGC	1 cut(s)	56
Sse9I	AATT	6 cut(s)	81, 198, 212, 294, 344, 364
SspMI	CTAG	2 cut(s)	252, 264
StyI	CCWWGG	1 cut(s)	148
TaaI	ACNGT	1 cut(s)	331
TaqII	GACCGA	1 cut(s)	261
TasI	AATT	6 cut(s)	81, 198, 212, 294, 344, 364
Tru1I	TTAA	2 cut(s)	285, 367
Tru9I	TTAA	2 cut(s)	285, 367
TseI	GCWGC	2 cut(s)	35, 38
VpaK11BI	GGWCC	1 cut(s)	217
XapI	RAATTY	1 cut(s)	344
XbaI	TCTAGA	1 cut(s)	263
XceI	RCATGY	1 cut(s)	56
XmiI	GTMKAC	1 cut(s)	63
XspI	CTAG	2 cut(s)	252, 264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.