Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0005556

Physical Location & Seq

Genomic Coordinates Reverse (-)

63715370 .. 63720289

Gene Structure 4920 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG474900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGTTAGCTAAAGTGTCAAAGCTCCAGAGTTTAAAGTCAAGGTTATGGCACCGAGAATCCAATGGACAAGAACAAAAAGGTAATGGGGCTTTATCAGTTTTGAAATTGCAGAAGGGCAATCAAATGCCTGAAGATTACCCCAGATCTTTTAGAGAAGCAGCTGCAGTTTTCCAGCATGCTCAAGTATACGACTCTGACAAGAAAATTATCAAGCATATGAGACCCATACCACAAGAGCTTGTGGAGTCCCTTGATGGAGAACTTGACTTCCTTGGATCAGAAATCCCTTCATCAATAGCCATTGCAATTGCTGAAGGAAAATTGGACCCCATAAGTATGGAGGCCTTTGATCATTTCCCTAGTTCCATTTCTAGACATCGGTCAGATCCCATTAAGAGCCAAATTACTCTTCACTTTCAGATATCTGAGACTGCTACTGTATCTGCACAAGATGGAACTGATGAATTAAATACTTATCTACACAAGTATCGCATAGAGTTGGATCAACATCTTGGTGCTCTTGTGGGGAGATATATAAGGAAGCTGAGAAGTTTGCTTATTAGAATGGAGCAAAGGTGGCTGTTGTTTATGGTGGAGCGCCAATGGGTCAGCAGGTTTGGGTCTCTGCAGGCTCACTGGCCATTCCGTTTTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03430 map03430

Pfam Domains

Protein Families

XPG_I XPG_N

Protein Analysis

218

Amino Acids

25.15

Weight (kDa)

9.1

Isoelectric Point (pI)

44.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0342681 RchiOBHm_Chr4g0385031
rosa_laevigata	RLG00000008562 RLG00000014249 RLG00000030660
rosa_multiflora	Rmu_sc0000230.1_g000007 Rmu_sc0003052.1_g000011 Rmu_sc0006159.1_g000013 Rmu_sc0008336.1_g000014 Rmu_sc0010676.1_g000001 Rmu_sc0018406.1_g000002
rosa_roxburghii	Rroxscaffold_2G00116070 Rroxscaffold_7G00190900
rosa_rugosa	Rorug02G0507600
rosa_samantha	Rh2DG203900 Rh3DG272000 Rh4AG220600 Rh4CG002500 Rh4CG169000 Rh5AG255100 Rh5BG250800 Rh6BG140300 Rh6DG123700 Rh7AG342200 Rh7CG359800 Rh7CG474900
rosa_wichuraiana	Rw2G004640 Rw4G016300 Rw7G002500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	603
AccB1I	GGYRCC	1 cut(s)	48
AccI	GTMKAC	1 cut(s)	186
AclWI	GGATC	3 cut(s)	283, 380, 510
AcoI	YGGCCR	1 cut(s)	638
AcuI	CTGAAG	2 cut(s)	150, 333
AgsI	TTSAA	1 cut(s)	103
AjuI	GAANNNNNNNTTGG	2 cut(s)	393, 425
AloI	GAACNNNNNNTCC	2 cut(s)	252, 284
AluBI	AGCT	5 cut(s)	8, 22, 161, 238, 544
AluI	AGCT	5 cut(s)	8, 22, 161, 238, 544
Alw21I	GWGCWC	1 cut(s)	520
Alw26I	GTCTC	3 cut(s)	214, 422, 627
AlwI	GGATC	3 cut(s)	283, 380, 510
AoxI	GGCC	2 cut(s)	342, 638
ApeKI	GCWGC	2 cut(s)	158, 161
AspLEI	GCGC	1 cut(s)	600
AspS9I	GGNCC	1 cut(s)	325
AvaII	GGWCC	1 cut(s)	325
BaeI	ACNNNNGTAYC	2 cut(s)	470, 503
BalI	TGGCCA	1 cut(s)	640
BanI	GGYRCC	1 cut(s)	48
Bbv12I	GWGCWC	1 cut(s)	520
BbvI	GCAGC	2 cut(s)	148, 170
BccI	CCATC	2 cut(s)	248, 446
BclI	TGATCA	1 cut(s)	349
BcoDI	GTCTC	3 cut(s)	214, 422, 627
BfaI	CTAG	2 cut(s)	360, 372
BfmI	CTRYAG	2 cut(s)	162, 626
BfoI	RGCGCY	1 cut(s)	601
BfuAI	ACCTGC	1 cut(s)	603
BglII	AGATCT	1 cut(s)	143
BisI	GCNGC	2 cut(s)	159, 162
BlsI	GCNGC	2 cut(s)	160, 163
Bme18I	GGWCC	1 cut(s)	325
BmgT120I	GGNCC	1 cut(s)	325
BmiI	GGNNCC	2 cut(s)	50, 327
BoxI	GACNNNNGTC	1 cut(s)	379
BpmI	CTGGAG	1 cut(s)	8
BpuEI	CTTGAG	1 cut(s)	165
BsaBI	GATNNNNATC	1 cut(s)	507
BsaI	GGTCTC	2 cut(s)	214, 627
BsaJI	CCNNGG	1 cut(s)	271
BsaXI	ACNNNNNCTCC	2 cut(s)	560, 590
Bse1I	ACTGG	1 cut(s)	641
Bse3DI	GCAATG	1 cut(s)	300
Bse8I	GATNNNNATC	1 cut(s)	507
BseDI	CCNNGG	1 cut(s)	271
BseJI	GATNNNNATC	1 cut(s)	507
BseMI	GCAATG	1 cut(s)	300
BseMII	CTCAG	2 cut(s)	417, 536
BseNI	ACTGG	1 cut(s)	641
BseXI	GCAGC	2 cut(s)	148, 170
BsgI	GTGCAG	1 cut(s)	429
BshFI	GGCC	2 cut(s)	344, 640
BshNI	GGYRCC	1 cut(s)	48
BsiHKAI	GWGCWC	1 cut(s)	520
BslFI	GGGAC	1 cut(s)	232
BsmAI	GTCTC	3 cut(s)	214, 422, 627
BsmFI	GGGAC	1 cut(s)	232
BsnI	GGCC	2 cut(s)	344, 640
Bso31I	GGTCTC	2 cut(s)	214, 627
Bsp1286I	GDGCHC	1 cut(s)	520
Bsp143I	GATC	5 cut(s)	143, 275, 349, 385, 502
BspANI	GGCC	2 cut(s)	344, 640
BspCNI	CTCAG	2 cut(s)	418, 537
BspLI	GGNNCC	2 cut(s)	50, 327
BspMAI	CTGCAG	2 cut(s)	166, 630
BspMI	ACCTGC	1 cut(s)	603
BspPI	GGATC	3 cut(s)	283, 380, 510
BspT107I	GGYRCC	1 cut(s)	48
BspTNI	GGTCTC	2 cut(s)	214, 627
BsrDI	GCAATG	1 cut(s)	300
BsrI	ACTGG	1 cut(s)	641
BssECI	CCNNGG	1 cut(s)	271
BssMI	GATC	5 cut(s)	143, 275, 349, 385, 502
BssNAI	GTATAC	1 cut(s)	187
BssT1I	CCWWGG	1 cut(s)	271
Bst1107I	GTATAC	1 cut(s)	187
Bst4CI	ACNGT	1 cut(s)	439
Bst6I	CTCTTC	1 cut(s)	414
BstC8I	GCNNGC	2 cut(s)	177, 630
BstDEI	CTNAG	2 cut(s)	426, 545
BstH2I	RGCGCY	1 cut(s)	601
BstHHI	GCGC	1 cut(s)	600
BstKTI	GATC	5 cut(s)	146, 278, 352, 388, 505
BstMAI	GTCTC	3 cut(s)	214, 422, 627
BstMBI	GATC	5 cut(s)	143, 275, 349, 385, 502
BstMWI	GCNNNNNNNGC	1 cut(s)	577
BstNSI	RCATGY	1 cut(s)	179
BstPAI	GACNNNNGTC	1 cut(s)	379
BstSFI	CTRYAG	2 cut(s)	162, 626
BstV1I	GCAGC	2 cut(s)	148, 170
BstX2I	RGATCY	2 cut(s)	143, 385
BstXI	CCANNNNNNTGG	1 cut(s)	337
BstYI	RGATCY	2 cut(s)	143, 385
BstZ17I	GTATAC	1 cut(s)	187
BsuRI	GGCC	2 cut(s)	344, 640
BtsIMutI	CAGTG	1 cut(s)	634
BveI	ACCTGC	1 cut(s)	603
Cac8I	GCNNGC	2 cut(s)	177, 630
CfoI	GCGC	1 cut(s)	600
Cfr13I	GGNCC	1 cut(s)	325
CviAII	CATG	1 cut(s)	176
DdeI	CTNAG	2 cut(s)	426, 545
DpnI	GATC	5 cut(s)	145, 277, 351, 387, 504
DpnII	GATC	5 cut(s)	143, 275, 349, 385, 502
DraI	TTTAAA	1 cut(s)	33
EaeI	YGGCCR	1 cut(s)	638
Eam1104I	CTCTTC	1 cut(s)	414
EarI	CTCTTC	1 cut(s)	414
Eco130I	CCWWGG	1 cut(s)	271
Eco147I	AGGCCT	1 cut(s)	344
Eco31I	GGTCTC	2 cut(s)	214, 627
Eco32I	GATATC	1 cut(s)	423
Eco47I	GGWCC	1 cut(s)	325
Eco57I	CTGAAG	2 cut(s)	150, 333
EcoRV	GATATC	1 cut(s)	423
EcoT14I	CCWWGG	1 cut(s)	271
ErhI	CCWWGG	1 cut(s)	271
FaeI	CATG	1 cut(s)	179
FaqI	GGGAC	1 cut(s)	232
FatI	CATG	1 cut(s)	175
FauNDI	CATATG	1 cut(s)	216
FbaI	TGATCA	1 cut(s)	349
FblI	GTMKAC	1 cut(s)	186
Fnu4HI	GCNGC	2 cut(s)	159, 162
Fsp4HI	GCNGC	2 cut(s)	159, 162
FspBI	CTAG	2 cut(s)	360, 372
GlaI	GCGC	1 cut(s)	599
GluI	GCNGC	2 cut(s)	159, 162
GsuI	CTGGAG	1 cut(s)	8
HaeII	RGCGCY	1 cut(s)	601
HaeIII	GGCC	2 cut(s)	344, 640
HhaI	GCGC	1 cut(s)	600
Hin1II	CATG	1 cut(s)	179
Hin6I	GCGC	1 cut(s)	598
HinP1I	GCGC	1 cut(s)	598
HinfI	GANTC	3 cut(s)	56, 191, 245
Hpy166II	GTNNAC	1 cut(s)	187
Hpy188I	TCNGA	5 cut(s)	196, 280, 385, 420, 427
Hpy188III	TCNNGA	2 cut(s)	25, 372
Hpy8I	GTNNAC	1 cut(s)	187
HpyAV	CCTTC	3 cut(s)	106, 297, 308
HpyCH4III	ACNGT	1 cut(s)	439
HpyCH4V	TGCA	5 cut(s)	109, 164, 305, 446, 628
HpyF10VI	GCNNNNNNNGC	1 cut(s)	577
HpyF3I	CTNAG	2 cut(s)	426, 545
Hsp92II	CATG	1 cut(s)	179
HspAI	GCGC	1 cut(s)	598
Ksp22I	TGATCA	1 cut(s)	349
Kzo9I	GATC	5 cut(s)	143, 275, 349, 385, 502
LmnI	GCTCC	3 cut(s)	27, 568, 595
LpnPI	CCDG	7 cut(s)	38, 141, 154, 185, 598, 614, 622
Lsp1109I	GCAGC	2 cut(s)	148, 170
MaeI	CTAG	2 cut(s)	360, 372
MalI	GATC	5 cut(s)	145, 277, 351, 387, 504
MboI	GATC	5 cut(s)	143, 275, 349, 385, 502
MboII	GAAGA	2 cut(s)	143, 401
MfeI	CAATTG	1 cut(s)	306
MflI	RGATCY	2 cut(s)	143, 385
MhlI	GDGCHC	1 cut(s)	520
MlsI	TGGCCA	1 cut(s)	640
MluCI	AATT	6 cut(s)	104, 204, 306, 320, 402, 464
MluNI	TGGCCA	1 cut(s)	640
MlyI	GAGTC	2 cut(s)	185, 254
MmeI	TCCRAC	1 cut(s)	480
MnlI	CCTC	1 cut(s)	334
Mox20I	TGGCCA	1 cut(s)	640
MscI	TGGCCA	1 cut(s)	640
MseI	TTAA	3 cut(s)	32, 393, 467
MslI	CAYNNNNRTG	2 cut(s)	335, 513
Msp20I	TGGCCA	1 cut(s)	640
MspA1I	CMGCKG	1 cut(s)	161
MunI	CAATTG	1 cut(s)	306
MwoI	GCNNNNNNNGC	1 cut(s)	577
NdeI	CATATG	1 cut(s)	216
NdeII	GATC	5 cut(s)	143, 275, 349, 385, 502
NlaIII	CATG	1 cut(s)	179
NlaIV	GGNNCC	2 cut(s)	50, 327
NspI	RCATGY	1 cut(s)	179
PaeI	GCATGC	1 cut(s)	179
PceI	AGGCCT	1 cut(s)	344
PfeI	GAWTC	1 cut(s)	56
PkrI	GCNGC	2 cut(s)	160, 163
PleI	GAGTC	2 cut(s)	185, 253
PpsI	GAGTC	2 cut(s)	185, 253
PshAI	GACNNNNGTC	1 cut(s)	379
PspN4I	GGNNCC	2 cut(s)	50, 327
PspPI	GGNCC	1 cut(s)	325
PstI	CTGCAG	2 cut(s)	166, 630
PsuI	RGATCY	2 cut(s)	143, 385
PvuII	CAGCTG	1 cut(s)	161
RseI	CAYNNNNRTG	2 cut(s)	335, 513
SaqAI	TTAA	3 cut(s)	32, 393, 467
SatI	GCNGC	2 cut(s)	159, 162
Sau3AI	GATC	5 cut(s)	143, 275, 349, 385, 502
Sau96I	GGNCC	1 cut(s)	325
SchI	GAGTC	2 cut(s)	185, 254
SduI	GDGCHC	1 cut(s)	520
SetI	ASST	9 cut(s)	10, 24, 44, 82, 163, 240, 546, 578, 617
SfcI	CTRYAG	2 cut(s)	162, 626
SinI	GGWCC	1 cut(s)	325
SmiMI	CAYNNNNRTG	2 cut(s)	335, 513
SmlI	CTYRAG	1 cut(s)	180
SmoI	CTYRAG	1 cut(s)	180
SphI	GCATGC	1 cut(s)	179
Sse9I	AATT	6 cut(s)	104, 204, 306, 320, 402, 464
SseBI	AGGCCT	1 cut(s)	344
SspMI	CTAG	2 cut(s)	360, 372
StuI	AGGCCT	1 cut(s)	344
StyI	CCWWGG	1 cut(s)	271
TaaI	ACNGT	1 cut(s)	439
TaqII	GACCGA	1 cut(s)	369
TasI	AATT	6 cut(s)	104, 204, 306, 320, 402, 464
TfiI	GAWTC	1 cut(s)	56
Tru1I	TTAA	3 cut(s)	32, 393, 467
Tru9I	TTAA	3 cut(s)	32, 393, 467
TscAI	CASTG	1 cut(s)	641
TseI	GCWGC	2 cut(s)	158, 161
TspDTI	ATGAA	2 cut(s)	279, 477
TspGWI	ACGGA	1 cut(s)	635
TspRI	CASTG	1 cut(s)	641
VpaK11BI	GGWCC	1 cut(s)	325
XbaI	TCTAGA	1 cut(s)	371
XceI	RCATGY	1 cut(s)	179
XmiI	GTMKAC	1 cut(s)	186
XspI	CTAG	2 cut(s)	360, 372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.