Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005556

Physical Location & Seq

Genomic Coordinates Forward (+)

63886365 .. 63890710

Gene Structure 4346 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0507600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGTTGTTCAATCCTTCAATTTCTTCTCATCATTTATCATCACCACTGTTTCTCCTCTCTATGCTTATGTTCTTCTACGGTGTTCATACGAATTCTTCGGGTTTCCATCAATGTTGGCTGAGGTGCAATTGGAAGTTGGAGTTCCAAGTCGATCTCGAGCAGAAAAGGAAAAACAAGAAGGAGCAAAGACCGGCCCTGCCATCCAGCCACGAAACGGCGGCCCTCTGTTCGCATTCGGGTCCTATTCTCAGTGCCGACCTTCCTCTGGTGTTACTTGTCCAGCCGACAACCTGGGGAGGAGAATTGAAGATAGGAAGCTGCTTCGGTGTATCAGGCGGATTTCTTGCATTTTCCGGCGACTCTGGTCGTTGTTTCCTGCAAATGAGGAATCACGAAATGGGATAAGAACTTTGAAATTTGACCAAATCTGTTGTTCAGCGAGAGTTCAGTTCAATTATGAAGGTCAACATGTTGCAGAGTTCAGATTGTGCTCCAATGAGGATATGAACCCATTATCGATAGAGATTCTTGAGGAAGAACTTGTGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

183

Amino Acids

20.85

Weight (kDa)

8.44

Isoelectric Point (pI)

63.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0342681 RchiOBHm_Chr4g0385031
rosa_laevigata	RLG00000008562 RLG00000014249 RLG00000030660
rosa_multiflora	Rmu_sc0000230.1_g000007 Rmu_sc0003052.1_g000011 Rmu_sc0006159.1_g000013 Rmu_sc0008336.1_g000014 Rmu_sc0010676.1_g000001 Rmu_sc0018406.1_g000002
rosa_roxburghii	Rroxscaffold_2G00116070 Rroxscaffold_7G00190900
rosa_rugosa	Rorug02G0507600
rosa_samantha	Rh2DG203900 Rh3DG272000 Rh4AG220600 Rh4CG002500 Rh4CG169000 Rh5AG255100 Rh5BG250800 Rh6BG140300 Rh6DG123700 Rh7AG342200 Rh7CG359800 Rh7CG474900
rosa_wichuraiana	Rw2G004640 Rw4G016300 Rw7G002500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	219, 337
AcsI	RAATTY	2 cut(s)	92, 416
AfiI	CCNNNNNNNGG	2 cut(s)	215, 266
AflIII	ACRYGT	1 cut(s)	469
AgsI	TTSAA	5 cut(s)	11, 19, 308, 415, 454
AjnI	CCWGG	1 cut(s)	291
AluBI	AGCT	1 cut(s)	319
AluI	AGCT	1 cut(s)	319
Alw21I	GWGCWC	1 cut(s)	494
Ama87I	CYCGRG	1 cut(s)	156
AoxI	GGCC	2 cut(s)	193, 220
ApeKI	GCWGC	1 cut(s)	319
ApoI	RAATTY	2 cut(s)	92, 416
AspS9I	GGNCC	3 cut(s)	194, 221, 240
AsuHPI	GGTGA	1 cut(s)	34
AvaI	CYCGRG	1 cut(s)	156
AvaII	GGWCC	1 cut(s)	240
Bbv12I	GWGCWC	1 cut(s)	494
BbvCI	CCTCAGC	1 cut(s)	120
BbvI	GCAGC	1 cut(s)	306
BccI	CCATC	2 cut(s)	115, 209
BceAI	ACGGC	1 cut(s)	232
BciT130I	CCWGG	1 cut(s)	293
BisI	GCNGC	2 cut(s)	220, 320
BlsI	GCNGC	2 cut(s)	221, 321
Bme1390I	CCNGG	1 cut(s)	293
Bme18I	GGWCC	1 cut(s)	240
BmeT110I	CYCGRG	1 cut(s)	156
BmgT120I	GGNCC	3 cut(s)	194, 221, 240
BmiI	GGNNCC	1 cut(s)	241
BmrFI	CCNGG	1 cut(s)	293
BoxI	GACNNNNGTC	1 cut(s)	364
Bpu10I	CCTNAGC	1 cut(s)	120
BpuEI	CTTGAG	1 cut(s)	551
Bsa29I	ATCGAT	1 cut(s)	518
BsaJI	CCNNGG	1 cut(s)	292
BsaXI	ACNNNNNCTCC	2 cut(s)	37, 67
Bsc4I	CCNNNNNNNGG	2 cut(s)	215, 266
Bse118I	RCCGGY	1 cut(s)	191
BseBI	CCWGG	1 cut(s)	293
BseCI	ATCGAT	1 cut(s)	518
BseDI	CCNNGG	1 cut(s)	292
BseGI	GGATG	1 cut(s)	201
BseLI	CCNNNNNNNGG	2 cut(s)	215, 266
BseMII	CTCAG	2 cut(s)	111, 263
BseRI	GAGGAG	2 cut(s)	45, 313
BseXI	GCAGC	1 cut(s)	306
BshFI	GGCC	2 cut(s)	195, 222
BshVI	ATCGAT	1 cut(s)	518
BsiHKAI	GWGCWC	1 cut(s)	494
BsiHKCI	CYCGRG	1 cut(s)	156
BsiSI	CCGG	2 cut(s)	192, 355
BslI	CCNNNNNNNGG	2 cut(s)	215, 266
BsmI	GAATGC	1 cut(s)	233
BsnI	GGCC	2 cut(s)	195, 222
BsoBI	CYCGRG	1 cut(s)	156
Bsp1286I	GDGCHC	1 cut(s)	494
Bsp143I	GATC	1 cut(s)	152
BspACI	CCGC	2 cut(s)	219, 337
BspANI	GGCC	2 cut(s)	195, 222
BspCNI	CTCAG	2 cut(s)	112, 262
BspDI	ATCGAT	1 cut(s)	518
BspLI	GGNNCC	1 cut(s)	241
BsrFI	RCCGGY	1 cut(s)	191
BssAI	RCCGGY	1 cut(s)	191
BssECI	CCNNGG	1 cut(s)	292
BssMI	GATC	1 cut(s)	152
Bst2UI	CCWGG	1 cut(s)	293
Bst4CI	ACNGT	2 cut(s)	49, 81
BstDEI	CTNAG	2 cut(s)	120, 249
BstF5I	GGATG	1 cut(s)	201
BstKTI	GATC	1 cut(s)	155
BstMBI	GATC	1 cut(s)	152
BstNI	CCWGG	1 cut(s)	293
BstNSI	RCATGY	1 cut(s)	473
BstPAI	GACNNNNGTC	1 cut(s)	364
BstSCI	CCNGG	1 cut(s)	291
BstV1I	GCAGC	1 cut(s)	306
Bsu15I	ATCGAT	1 cut(s)	518
BsuRI	GGCC	2 cut(s)	195, 222
BsuTUI	ATCGAT	1 cut(s)	518
BtsCI	GGATG	1 cut(s)	201
BtsIMutI	CAGTG	2 cut(s)	45, 257
Cfr10I	RCCGGY	1 cut(s)	191
Cfr13I	GGNCC	3 cut(s)	194, 221, 240
ClaI	ATCGAT	1 cut(s)	518
CviAII	CATG	1 cut(s)	470
CviJI	RGCY	6 cut(s)	119, 195, 208, 222, 284, 319
CviKI_1	RGCY	6 cut(s)	119, 195, 208, 222, 284, 319
DdeI	CTNAG	2 cut(s)	120, 249
DpnI	GATC	1 cut(s)	154
DpnII	GATC	1 cut(s)	152
EciI	GGCGGA	1 cut(s)	352
Eco47I	GGWCC	1 cut(s)	240
Eco88I	CYCGRG	1 cut(s)	156
EcoO109I	RGGNCCY	1 cut(s)	240
EcoRI	GAATTC	1 cut(s)	92
EcoRII	CCWGG	1 cut(s)	291
FaeI	CATG	1 cut(s)	473
FaiI	YATR	6 cut(s)	63, 69, 88, 459, 471, 506
FatI	CATG	1 cut(s)	469
Fnu4HI	GCNGC	2 cut(s)	220, 320
FokI	GGATG	1 cut(s)	188
Fsp4HI	GCNGC	2 cut(s)	220, 320
GluI	GCNGC	2 cut(s)	220, 320
HaeIII	GGCC	2 cut(s)	195, 222
HapII	CCGG	2 cut(s)	192, 355
Hin1II	CATG	1 cut(s)	473
HincII	GTYRAC	1 cut(s)	467
HindII	GTYRAC	1 cut(s)	467
HinfI	GANTC	3 cut(s)	360, 389, 526
HpaII	CCGG	2 cut(s)	192, 355
HphI	GGTGA	1 cut(s)	34
Hpy166II	GTNNAC	1 cut(s)	467
Hpy188I	TCNGA	1 cut(s)	485
Hpy188III	TCNNGA	3 cut(s)	156, 393, 530
Hpy8I	GTNNAC	1 cut(s)	467
HpyAV	CCTTC	4 cut(s)	25, 173, 270, 455
HpyCH4III	ACNGT	2 cut(s)	49, 81
HpyCH4V	TGCA	4 cut(s)	127, 348, 380, 476
HpyF3I	CTNAG	2 cut(s)	120, 249
Hsp92II	CATG	1 cut(s)	473
Kzo9I	GATC	1 cut(s)	152
LmnI	GCTCC	2 cut(s)	182, 497
Lsp1109I	GCAGC	1 cut(s)	306
MaeIII	GTNAC	1 cut(s)	271
MalI	GATC	1 cut(s)	154
MboI	GATC	1 cut(s)	152
MboII	GAAGA	5 cut(s)	16, 65, 88, 320, 548
MfeI	CAATTG	1 cut(s)	128
MhlI	GDGCHC	1 cut(s)	494
MluCI	AATT	6 cut(s)	19, 92, 128, 303, 416, 454
MlyI	GAGTC	1 cut(s)	354
MmeI	TCCRAC	1 cut(s)	118
MnlI	CCTC	8 cut(s)	66, 115, 234, 274, 291, 379, 493, 526
MspI	CCGG	2 cut(s)	192, 355
MspR9I	CCNGG	1 cut(s)	293
MunI	CAATTG	1 cut(s)	128
Mva1269I	GAATGC	1 cut(s)	233
MvaI	CCWGG	1 cut(s)	293
NdeII	GATC	1 cut(s)	152
NlaIII	CATG	1 cut(s)	473
NlaIV	GGNNCC	1 cut(s)	241
NspI	RCATGY	1 cut(s)	473
PaeR7I	CTCGAG	1 cut(s)	156
PciI	ACATGT	1 cut(s)	469
PctI	GAATGC	1 cut(s)	233
PfeI	GAWTC	2 cut(s)	389, 526
PkrI	GCNGC	2 cut(s)	221, 321
PleI	GAGTC	1 cut(s)	354
PpsI	GAGTC	1 cut(s)	354
PpuMI	RGGWCCY	1 cut(s)	240
PscI	ACATGT	1 cut(s)	469
PshAI	GACNNNNGTC	1 cut(s)	364
Psp5II	RGGWCCY	1 cut(s)	240
Psp6I	CCWGG	1 cut(s)	291
PspGI	CCWGG	1 cut(s)	291
PspN4I	GGNNCC	1 cut(s)	241
PspPI	GGNCC	3 cut(s)	194, 221, 240
PspPPI	RGGWCCY	1 cut(s)	240
SatI	GCNGC	2 cut(s)	220, 320
Sau3AI	GATC	1 cut(s)	152
Sau96I	GGNCC	3 cut(s)	194, 221, 240
SchI	GAGTC	1 cut(s)	354
ScrFI	CCNGG	1 cut(s)	293
SduI	GDGCHC	1 cut(s)	494
SetI	ASST	5 cut(s)	126, 262, 294, 321, 466
Sfr274I	CTCGAG	1 cut(s)	156
SinI	GGWCC	1 cut(s)	240
SlaI	CTCGAG	1 cut(s)	156
SmlI	CTYRAG	2 cut(s)	156, 530
SmoI	CTYRAG	2 cut(s)	156, 530
Sse9I	AATT	6 cut(s)	19, 92, 128, 303, 416, 454
SsiI	CCGC	2 cut(s)	219, 337
StyD4I	CCNGG	1 cut(s)	291
TaaI	ACNGT	2 cut(s)	49, 81
TaqI	TCGA	3 cut(s)	151, 157, 518
TasI	AATT	6 cut(s)	19, 92, 128, 303, 416, 454
TauI	GCSGC	1 cut(s)	222
TfiI	GAWTC	2 cut(s)	389, 526
TscAI	CASTG	2 cut(s)	52, 257
TseI	GCWGC	1 cut(s)	319
TspDTI	ATGAA	3 cut(s)	75, 474, 521
TspRI	CASTG	2 cut(s)	52, 257
VpaK11BI	GGWCC	1 cut(s)	240
XapI	RAATTY	2 cut(s)	92, 416
XceI	RCATGY	1 cut(s)	473
XhoI	CTCGAG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.