Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010676.1

Orthogroup ID

OG0005556

Physical Location & Seq

Genomic Coordinates Reverse (-)

2185 .. 7508

Gene Structure 5324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010676.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

atgaagccctctctctcttcctccgacaaaccgctcgtctcttttgtttctctcacttctggcgacggccgcctagactatttcttctctgagacgaagacgacggacttgacgtcacagaatctcgagtacgacttctatcggaacatgtgtcctcaggccgaggggatcgtgaggtcgaagatggcatggatttacaggcagcacaggaacgcctcggctcagttgcgtcgtctctttttccacgactgcttcattgaggtgatttggggtacaaaggctctgatgcattggaccccgacagtttcgaatggccttttcaatatgatggcgcttgacctattcttgctcgggtttgctctagcctctgcccctctaatgttctacctcagaataagaacagagcaccactctagagaacaaagcgcgcaaggtgctttttcgggcctggatcgggaagcagaaggactggtggcgttggaaagtggtgcccatggccaacgttggcttgtttgcgcagcagggatgcttcggtggcagcaggctggaacgcagggctgcaggaagggggcagcaggggctgctgtgcaaggttgcaagcacacgggcgctcgggctgcagcgaaggctcggctagctcgggctaggggttgctttgtgaatgagttttggttttctgttttgtggttagagtcgtgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

233

Amino Acids

26.06

Weight (kDa)

9.19

Isoelectric Point (pI)

39.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0342681 RchiOBHm_Chr4g0385031
rosa_laevigata	RLG00000008562 RLG00000014249 RLG00000030660
rosa_multiflora	Rmu_sc0000230.1_g000007 Rmu_sc0003052.1_g000011 Rmu_sc0006159.1_g000013 Rmu_sc0008336.1_g000014 Rmu_sc0010676.1_g000001 Rmu_sc0018406.1_g000002
rosa_roxburghii	Rroxscaffold_2G00116070 Rroxscaffold_7G00190900
rosa_rugosa	Rorug02G0507600
rosa_samantha	Rh2DG203900 Rh3DG272000 Rh4AG220600 Rh4CG002500 Rh4CG169000 Rh5AG255100 Rh5BG250800 Rh6BG140300 Rh6DG123700 Rh7AG342200 Rh7CG359800 Rh7CG474900
rosa_wichuraiana	Rw2G004640 Rw4G016300 Rw7G002500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	116
Acc16I	TGCGCA	1 cut(s)	517
AccB1I	GGYRCC	1 cut(s)	488
AccBSI	CCGCTC	1 cut(s)	34
AccII	CGCG	1 cut(s)	428
AciI	CCGC	2 cut(s)	32, 70
AclI	AACGTT	1 cut(s)	502
AclWI	GGATC	2 cut(s)	176, 459
AcoI	YGGCCR	2 cut(s)	67, 496
AcyI	GRCGYC	1 cut(s)	113
AfaI	GTAC	2 cut(s)	131, 274
AfiI	CCNNNNNNNGG	1 cut(s)	454
AflIII	ACRYGT	1 cut(s)	147
AgsI	TTSAA	1 cut(s)	322
AhdI	GACNNNNNGTC	1 cut(s)	112
AjnI	CCWGG	1 cut(s)	447
AluBI	AGCT	1 cut(s)	638
AluI	AGCT	1 cut(s)	638
Alw21I	GWGCWC	1 cut(s)	408
Alw26I	GTCTC	3 cut(s)	43, 86, 239
AlwI	GGATC	2 cut(s)	176, 459
AlwNI	CAGNNNCTG	1 cut(s)	581
Ama87I	CYCGRG	4 cut(s)	125, 350, 612, 639
AoxI	GGCC	5 cut(s)	67, 159, 313, 445, 496
ApeKI	GCWGC	8 cut(s)	202, 518, 538, 558, 572, 581, 617, 620
ArsI	GACNNNNNNTTYG	2 cut(s)	21, 53
AspLEI	GCGC	5 cut(s)	334, 428, 430, 518, 611
AspS9I	GGNCC	2 cut(s)	294, 445
AsuHPI	GGTGA	1 cut(s)	274
AsuII	TTCGAA	1 cut(s)	308
AsuNHI	GCTAGC	1 cut(s)	634
AvaI	CYCGRG	4 cut(s)	125, 350, 612, 639
AvaII	GGWCC	1 cut(s)	294
AxyI	CCTNAGG	1 cut(s)	156
BaeGI	GKGCMC	1 cut(s)	493
BalI	TGGCCA	1 cut(s)	498
BanI	GGYRCC	1 cut(s)	488
BbsI	GAAGAC	1 cut(s)	104
Bbv12I	GWGCWC	1 cut(s)	408
BbvI	GCAGC	8 cut(s)	214, 530, 545, 550, 568, 584, 604, 632
BccI	CCATC	2 cut(s)	178, 322
BceAI	ACGGC	1 cut(s)	82
BciT130I	CCWGG	1 cut(s)	449
BcoDI	GTCTC	3 cut(s)	43, 86, 239
BfaI	CTAG	5 cut(s)	74, 362, 414, 635, 645
BfmI	CTRYAG	2 cut(s)	559, 618
BfoI	RGCGCY	2 cut(s)	335, 612
BisI	GCNGC	9 cut(s)	70, 203, 519, 539, 559, 573, 582, 618, 621
BlsI	GCNGC	9 cut(s)	71, 204, 520, 540, 560, 574, 583, 619, 622
Bme1390I	CCNGG	1 cut(s)	449
Bme18I	GGWCC	1 cut(s)	294
BmeRI	GACNNNNNGTC	1 cut(s)	112
BmeT110I	CYCGRG	4 cut(s)	125, 350, 612, 639
BmgT120I	GGNCC	2 cut(s)	294, 445
BmiI	GGNNCC	2 cut(s)	296, 490
BmrFI	CCNGG	1 cut(s)	449
BmsI	GCATC	2 cut(s)	276, 516
BmtI	GCTAGC	1 cut(s)	638
BpiI	GAAGAC	1 cut(s)	104
BplI	GAGNNNNNCTC	2 cut(s)	395, 427
Bpu14I	TTCGAA	1 cut(s)	308
BsaHI	GRCGYC	1 cut(s)	113
BsaJI	CCNNGG	3 cut(s)	162, 216, 493
Bsc4I	CCNNNNNNNGG	1 cut(s)	454
Bse1I	ACTGG	1 cut(s)	474
Bse21I	CCTNAGG	1 cut(s)	156
BseBI	CCWGG	1 cut(s)	449
BseDI	CCNNGG	3 cut(s)	162, 216, 493
BseGI	GGATG	1 cut(s)	531
BseLI	CCNNNNNNNGG	1 cut(s)	454
BseMII	CTCAG	4 cut(s)	81, 170, 236, 403
BseNI	ACTGG	1 cut(s)	474
BsePI	GCGCGC	1 cut(s)	426
BseSI	GKGCMC	1 cut(s)	493
BseX3I	CGGCCG	1 cut(s)	67
BseXI	GCAGC	8 cut(s)	214, 530, 545, 550, 568, 584, 604, 632
Bsh1236I	CGCG	1 cut(s)	428
Bsh1285I	CGRYCG	1 cut(s)	70
BshFI	GGCC	5 cut(s)	69, 161, 315, 447, 498
BshNI	GGYRCC	1 cut(s)	488
BsiEI	CGRYCG	1 cut(s)	70
BsiHKAI	GWGCWC	1 cut(s)	408
BsiHKCI	CYCGRG	4 cut(s)	125, 350, 612, 639
BslI	CCNNNNNNNGG	1 cut(s)	454
BsmAI	GTCTC	3 cut(s)	43, 86, 239
BsmBI	CGTCTC	3 cut(s)	43, 86, 239
BsnI	GGCC	5 cut(s)	69, 161, 315, 447, 498
BsoBI	CYCGRG	4 cut(s)	125, 350, 612, 639
Bsp119I	TTCGAA	1 cut(s)	308
Bsp1286I	GDGCHC	2 cut(s)	408, 493
Bsp143I	GATC	2 cut(s)	168, 451
Bsp19I	CCATGG	1 cut(s)	493
BspACI	CCGC	2 cut(s)	32, 70
BspANI	GGCC	5 cut(s)	69, 161, 315, 447, 498
BspCNI	CTCAG	4 cut(s)	82, 169, 235, 402
BspFNI	CGCG	1 cut(s)	428
BspLI	GGNNCC	2 cut(s)	296, 490
BspMAI	CTGCAG	2 cut(s)	563, 622
BspOI	GCTAGC	1 cut(s)	638
BspPI	GGATC	2 cut(s)	176, 459
BspT104I	TTCGAA	1 cut(s)	308
BspT107I	GGYRCC	1 cut(s)	488
BsrBI	CCGCTC	1 cut(s)	34
BsrI	ACTGG	1 cut(s)	474
BssECI	CCNNGG	3 cut(s)	162, 216, 493
BssHII	GCGCGC	1 cut(s)	426
BssMI	GATC	2 cut(s)	168, 451
BssNI	GRCGYC	1 cut(s)	113
BssT1I	CCWWGG	1 cut(s)	493
Bst2UI	CCWGG	1 cut(s)	449
Bst4CI	ACNGT	1 cut(s)	304
Bst6I	CTCTTC	1 cut(s)	22
BstACI	GRCGYC	1 cut(s)	113
BstAPI	GCANNNNNTGC	1 cut(s)	581
BstBI	TTCGAA	1 cut(s)	308
BstC8I	GCNNGC	4 cut(s)	428, 543, 599, 636
BstDEI	CTNAG	4 cut(s)	90, 156, 222, 389
BstDSI	CCRYGG	1 cut(s)	493
BstF5I	GGATG	1 cut(s)	531
BstFNI	CGCG	1 cut(s)	428
BstH2I	RGCGCY	2 cut(s)	335, 612
BstHHI	GCGC	5 cut(s)	334, 428, 430, 518, 611
BstKTI	GATC	2 cut(s)	171, 454
BstMAI	GTCTC	3 cut(s)	43, 86, 239
BstMBI	GATC	2 cut(s)	168, 451
BstMCI	CGRYCG	1 cut(s)	70
BstMWI	GCNNNNNNNGC	8 cut(s)	69, 434, 535, 578, 581, 617, 626, 635
BstNI	CCWGG	1 cut(s)	449
BstNSI	RCATGY	1 cut(s)	151
BstSCI	CCNGG	1 cut(s)	447
BstSFI	CTRYAG	2 cut(s)	559, 618
BstSLI	GKGCMC	1 cut(s)	493
BstUI	CGCG	1 cut(s)	428
BstV1I	GCAGC	8 cut(s)	214, 530, 545, 550, 568, 584, 604, 632
BstV2I	GAAGAC	1 cut(s)	104
BstZI	CGGCCG	1 cut(s)	67
Bsu36I	CCTNAGG	1 cut(s)	156
BsuRI	GGCC	5 cut(s)	69, 161, 315, 447, 498
BtgI	CCRYGG	1 cut(s)	493
BtsCI	GGATG	1 cut(s)	531
Cac8I	GCNNGC	4 cut(s)	428, 543, 599, 636
CaiI	CAGNNNCTG	1 cut(s)	581
CfoI	GCGC	5 cut(s)	334, 428, 430, 518, 611
Cfr13I	GGNCC	2 cut(s)	294, 445
CseI	GACGC	1 cut(s)	218
Csp6I	GTAC	2 cut(s)	130, 273
CviAII	CATG	3 cut(s)	148, 189, 494
CviQI	GTAC	2 cut(s)	130, 273
DdeI	CTNAG	4 cut(s)	90, 156, 222, 389
DpnI	GATC	2 cut(s)	170, 453
DpnII	GATC	2 cut(s)	168, 451
DriI	GACNNNNNGTC	1 cut(s)	112
EaeI	YGGCCR	2 cut(s)	67, 496
EagI	CGGCCG	1 cut(s)	67
Eam1104I	CTCTTC	1 cut(s)	22
Eam1105I	GACNNNNNGTC	1 cut(s)	112
EarI	CTCTTC	1 cut(s)	22
EclXI	CGGCCG	1 cut(s)	67
Eco130I	CCWWGG	1 cut(s)	493
Eco47I	GGWCC	1 cut(s)	294
Eco52I	CGGCCG	1 cut(s)	67
Eco81I	CCTNAGG	1 cut(s)	156
Eco88I	CYCGRG	4 cut(s)	125, 350, 612, 639
EcoRII	CCWGG	1 cut(s)	447
EcoT14I	CCWWGG	1 cut(s)	493
EcoT22I	ATGCAT	1 cut(s)	291
ErhI	CCWWGG	1 cut(s)	493
Esp3I	CGTCTC	3 cut(s)	43, 86, 239
FaeI	CATG	3 cut(s)	151, 192, 497
FaiI	YATR	4 cut(s)	149, 190, 326, 495
FatI	CATG	3 cut(s)	147, 188, 493
Fnu4HI	GCNGC	9 cut(s)	70, 203, 519, 539, 559, 573, 582, 618, 621
FokI	GGATG	1 cut(s)	538
Fsp4HI	GCNGC	9 cut(s)	70, 203, 519, 539, 559, 573, 582, 618, 621
FspBI	CTAG	5 cut(s)	74, 362, 414, 635, 645
FspI	TGCGCA	1 cut(s)	517
GlaI	GCGC	5 cut(s)	333, 427, 429, 517, 610
GluI	GCNGC	9 cut(s)	70, 203, 519, 539, 559, 573, 582, 618, 621
HaeII	RGCGCY	2 cut(s)	335, 612
HaeIII	GGCC	5 cut(s)	69, 161, 315, 447, 498
HgaI	GACGC	1 cut(s)	218
HhaI	GCGC	5 cut(s)	334, 428, 430, 518, 611
Hin1I	GRCGYC	1 cut(s)	113
Hin1II	CATG	3 cut(s)	151, 192, 497
Hin6I	GCGC	5 cut(s)	332, 426, 428, 516, 609
HinP1I	GCGC	5 cut(s)	332, 426, 428, 516, 609
HinfI	GANTC	2 cut(s)	121, 692
HphI	GGTGA	1 cut(s)	274
Hpy188I	TCNGA	5 cut(s)	25, 91, 144, 285, 392
Hpy188III	TCNNGA	4 cut(s)	125, 172, 414, 455
Hpy99I	CGWCG	3 cut(s)	68, 106, 234
HpyAV	CCTTC	3 cut(s)	458, 559, 619
HpyCH4III	ACNGT	1 cut(s)	304
HpyCH4IV	ACGT	2 cut(s)	113, 502
HpyCH4V	TGCA	5 cut(s)	289, 561, 589, 597, 620
HpyF10VI	GCNNNNNNNGC	8 cut(s)	69, 434, 535, 578, 581, 617, 626, 635
HpyF3I	CTNAG	4 cut(s)	90, 156, 222, 389
HpySE526I	ACGT	2 cut(s)	113, 502
Hsp92I	GRCGYC	1 cut(s)	113
Hsp92II	CATG	3 cut(s)	151, 192, 497
HspAI	GCGC	5 cut(s)	332, 426, 428, 516, 609
Kzo9I	GATC	2 cut(s)	168, 451
Lsp1109I	GCAGC	8 cut(s)	214, 530, 545, 550, 568, 584, 604, 632
LweI	GCATC	2 cut(s)	276, 516
MaeI	CTAG	5 cut(s)	74, 362, 414, 635, 645
MaeII	ACGT	2 cut(s)	113, 502
MaeIII	GTNAC	1 cut(s)	114
MalI	GATC	2 cut(s)	170, 453
MbiI	CCGCTC	1 cut(s)	34
MboI	GATC	2 cut(s)	168, 451
MboII	GAAGA	4 cut(s)	9, 76, 109, 193
MhlI	GDGCHC	2 cut(s)	408, 493
MlsI	TGGCCA	1 cut(s)	498
MluNI	TGGCCA	1 cut(s)	498
MlyI	GAGTC	1 cut(s)	701
MmeI	TCCRAC	2 cut(s)	48, 459
Mox20I	TGGCCA	1 cut(s)	498
Mph1103I	ATGCAT	1 cut(s)	291
MscI	TGGCCA	1 cut(s)	498
MslI	CAYNNNNRTG	1 cut(s)	260
Msp20I	TGGCCA	1 cut(s)	498
MspR9I	CCNGG	1 cut(s)	449
MvaI	CCWGG	1 cut(s)	449
MvnI	CGCG	1 cut(s)	428
MwoI	GCNNNNNNNGC	8 cut(s)	69, 434, 535, 578, 581, 617, 626, 635
NcoI	CCATGG	1 cut(s)	493
NdeII	GATC	2 cut(s)	168, 451
NheI	GCTAGC	1 cut(s)	634
NlaIII	CATG	3 cut(s)	151, 192, 497
NlaIV	GGNNCC	2 cut(s)	296, 490
NmeAIII	GCCGAG	3 cut(s)	187, 197, 610
NmuCI	GTSAC	1 cut(s)	114
NsbI	TGCGCA	1 cut(s)	517
NsiI	ATGCAT	1 cut(s)	291
NspI	RCATGY	1 cut(s)	151
NspV	TTCGAA	1 cut(s)	308
PaeR7I	CTCGAG	1 cut(s)	125
PauI	GCGCGC	1 cut(s)	426
PciI	ACATGT	1 cut(s)	147
PcsI	WCGNNNNNNNCGW	1 cut(s)	110
PfeI	GAWTC	1 cut(s)	121
PkrI	GCNGC	9 cut(s)	71, 204, 520, 540, 560, 574, 583, 619, 622
PleI	GAGTC	1 cut(s)	700
PpsI	GAGTC	1 cut(s)	700
PscI	ACATGT	1 cut(s)	147
Psp1406I	AACGTT	1 cut(s)	502
Psp6I	CCWGG	1 cut(s)	447
PspGI	CCWGG	1 cut(s)	447
PspN4I	GGNNCC	2 cut(s)	296, 490
PspPI	GGNCC	2 cut(s)	294, 445
PstI	CTGCAG	2 cut(s)	563, 622
PstNI	CAGNNNCTG	1 cut(s)	581
PteI	GCGCGC	1 cut(s)	426
RsaI	GTAC	2 cut(s)	131, 274
RsaNI	GTAC	2 cut(s)	130, 273
RseI	CAYNNNNRTG	1 cut(s)	260
SatI	GCNGC	9 cut(s)	70, 203, 519, 539, 559, 573, 582, 618, 621
Sau3AI	GATC	2 cut(s)	168, 451
Sau96I	GGNCC	2 cut(s)	294, 445
SchI	GAGTC	1 cut(s)	701
ScrFI	CCNGG	1 cut(s)	449
SduI	GDGCHC	2 cut(s)	408, 493
SetI	ASST	9 cut(s)	116, 179, 264, 342, 390, 436, 505, 595, 640
SfaNI	GCATC	2 cut(s)	276, 516
SfcI	CTRYAG	2 cut(s)	559, 618
Sfr274I	CTCGAG	1 cut(s)	125
SfuI	TTCGAA	1 cut(s)	308
SinI	GGWCC	1 cut(s)	294
SlaI	CTCGAG	1 cut(s)	125
SmiMI	CAYNNNNRTG	1 cut(s)	260
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
SsiI	CCGC	2 cut(s)	32, 70
SspMI	CTAG	5 cut(s)	74, 362, 414, 635, 645
StyD4I	CCNGG	1 cut(s)	447
StyI	CCWWGG	1 cut(s)	493
TaaI	ACNGT	1 cut(s)	304
TaiI	ACGT	2 cut(s)	116, 505
TaqI	TCGA	3 cut(s)	126, 179, 308
TauI	GCSGC	1 cut(s)	72
TfiI	GAWTC	1 cut(s)	121
TseFI	GTSAC	1 cut(s)	114
TseI	GCWGC	8 cut(s)	202, 518, 538, 558, 572, 581, 617, 620
Tsp45I	GTSAC	1 cut(s)	114
TspDTI	ATGAA	2 cut(s)	17, 244
TspGWI	ACGGA	1 cut(s)	119
VpaK11BI	GGWCC	1 cut(s)	294
XbaI	TCTAGA	1 cut(s)	413
XceI	RCATGY	1 cut(s)	151
XhoI	CTCGAG	1 cut(s)	125
XspI	CTAG	5 cut(s)	74, 362, 414, 635, 645
ZraI	GACGTC	1 cut(s)	114
Zsp2I	ATGCAT	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.