Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0005556

Physical Location & Seq

Genomic Coordinates Reverse (-)

49995924 .. 49998832

Gene Structure 2909 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014249

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGTTTCTACTTTTGGTTGCAGGCTTATCAGTTTTGAAATTGCAGAAGGGCAATCAAATGCCTGAAGATTACCCCAGATCTTTTAGAGAAGCAGCTGCAGTTTTCCAGCATGCTCAAGTATACAACTCTGACAAGACAATTGTCAAGCATATGAGACCCATACCAAAAGAGCTTGTGGAGTCCCTTGATGGAGAACTTGATTTCCTTGGATCGTTAAGTTTATTCTTACCTACAAGAGAAATCCCTTCATCAATAGCCATTGCAATTGCTGAAGGAAAATTGGACCCCATAACCATGGCAATAAGACCAGCTACTGAACTACTTCTCACACTTGCTAAATATAAGCACATGAGTACCCCAAGCCTCTCATCTGTTTGGATAATTTACTTCATCCTACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03430 map03430

Pfam Domains

Protein Families

XPG_I XPG_N

Protein Analysis

134

Amino Acids

14.89

Weight (kDa)

6.83

Isoelectric Point (pI)

37.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0342681 RchiOBHm_Chr4g0385031
rosa_laevigata	RLG00000008562 RLG00000014249 RLG00000030660
rosa_multiflora	Rmu_sc0000230.1_g000007 Rmu_sc0003052.1_g000011 Rmu_sc0006159.1_g000013 Rmu_sc0008336.1_g000014 Rmu_sc0010676.1_g000001 Rmu_sc0018406.1_g000002
rosa_roxburghii	Rroxscaffold_2G00116070 Rroxscaffold_7G00190900
rosa_rugosa	Rorug02G0507600
rosa_samantha	Rh2DG203900 Rh3DG272000 Rh4AG220600 Rh4CG002500 Rh4CG169000 Rh5AG255100 Rh5BG250800 Rh6BG140300 Rh6DG123700 Rh7AG342200 Rh7CG359800 Rh7CG474900
rosa_wichuraiana	Rw2G004640 Rw4G016300 Rw7G002500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	120
AclWI	GGATC	1 cut(s)	217
AcuI	CTGAAG	2 cut(s)	84, 291
AfaI	GTAC	1 cut(s)	355
AgsI	TTSAA	1 cut(s)	37
AloI	GAACNNNNNNTCC	2 cut(s)	186, 218
AluBI	AGCT	3 cut(s)	95, 172, 311
AluI	AGCT	3 cut(s)	95, 172, 311
Alw26I	GTCTC	1 cut(s)	148
AlwI	GGATC	1 cut(s)	217
AlwNI	CAGNNNCTG	1 cut(s)	314
ApeKI	GCWGC	2 cut(s)	92, 95
Asp700I	GAANNNNTTC	1 cut(s)	321
AspS9I	GGNCC	1 cut(s)	283
AvaII	GGWCC	1 cut(s)	283
BaeI	ACNNNNGTAYC	2 cut(s)	337, 370
BbvI	GCAGC	2 cut(s)	82, 104
BccI	CCATC	1 cut(s)	182
BcoDI	GTCTC	1 cut(s)	148
BfmI	CTRYAG	1 cut(s)	96
BglII	AGATCT	1 cut(s)	77
BisI	GCNGC	2 cut(s)	93, 96
BlsI	GCNGC	2 cut(s)	94, 97
Bme18I	GGWCC	1 cut(s)	283
BmgT120I	GGNCC	1 cut(s)	283
BmiI	GGNNCC	1 cut(s)	285
BoxI	GACNNNNGTC	1 cut(s)	140
BpuEI	CTTGAG	1 cut(s)	99
BsaI	GGTCTC	1 cut(s)	148
BsaJI	CCNNGG	2 cut(s)	205, 294
Bse3DI	GCAATG	1 cut(s)	258
BseDI	CCNNGG	2 cut(s)	205, 294
BseGI	GGATG	1 cut(s)	390
BseMI	GCAATG	1 cut(s)	258
BseXI	GCAGC	2 cut(s)	82, 104
BslFI	GGGAC	1 cut(s)	166
BsmAI	GTCTC	1 cut(s)	148
BsmFI	GGGAC	1 cut(s)	166
Bso31I	GGTCTC	1 cut(s)	148
Bsp143I	GATC	2 cut(s)	77, 209
Bsp19I	CCATGG	1 cut(s)	294
BspLI	GGNNCC	1 cut(s)	285
BspMAI	CTGCAG	1 cut(s)	100
BspPI	GGATC	1 cut(s)	217
BspTNI	GGTCTC	1 cut(s)	148
BsrDI	GCAATG	1 cut(s)	258
BssECI	CCNNGG	2 cut(s)	205, 294
BssMI	GATC	2 cut(s)	77, 209
BssNAI	GTATAC	1 cut(s)	121
BssT1I	CCWWGG	2 cut(s)	205, 294
Bst1107I	GTATAC	1 cut(s)	121
BstC8I	GCNNGC	2 cut(s)	22, 111
BstDSI	CCRYGG	1 cut(s)	294
BstF5I	GGATG	1 cut(s)	390
BstKTI	GATC	2 cut(s)	80, 212
BstMAI	GTCTC	1 cut(s)	148
BstMBI	GATC	2 cut(s)	77, 209
BstNSI	RCATGY	1 cut(s)	113
BstPAI	GACNNNNGTC	1 cut(s)	140
BstSFI	CTRYAG	1 cut(s)	96
BstV1I	GCAGC	2 cut(s)	82, 104
BstX2I	RGATCY	1 cut(s)	77
BstXI	CCANNNNNNTGG	1 cut(s)	295
BstYI	RGATCY	1 cut(s)	77
BstZ17I	GTATAC	1 cut(s)	121
BtgI	CCRYGG	1 cut(s)	294
BtsCI	GGATG	1 cut(s)	390
Cac8I	GCNNGC	2 cut(s)	22, 111
CaiI	CAGNNNCTG	1 cut(s)	314
Cfr13I	GGNCC	1 cut(s)	283
Csp6I	GTAC	1 cut(s)	354
CviAII	CATG	3 cut(s)	110, 295, 349
CviJI	RGCY	6 cut(s)	24, 95, 172, 257, 311, 363
CviKI_1	RGCY	6 cut(s)	24, 95, 172, 257, 311, 363
CviQI	GTAC	1 cut(s)	354
DpnI	GATC	2 cut(s)	79, 211
DpnII	GATC	2 cut(s)	77, 209
Eco130I	CCWWGG	2 cut(s)	205, 294
Eco31I	GGTCTC	1 cut(s)	148
Eco47I	GGWCC	1 cut(s)	283
Eco57I	CTGAAG	2 cut(s)	84, 291
EcoT14I	CCWWGG	2 cut(s)	205, 294
ErhI	CCWWGG	2 cut(s)	205, 294
FaeI	CATG	3 cut(s)	113, 298, 352
FaiI	YATR	9 cut(s)	111, 121, 150, 152, 161, 290, 296, 342, 350
FaqI	GGGAC	1 cut(s)	166
FatI	CATG	3 cut(s)	109, 294, 348
FauNDI	CATATG	1 cut(s)	150
FblI	GTMKAC	1 cut(s)	120
Fnu4HI	GCNGC	2 cut(s)	93, 96
FokI	GGATG	1 cut(s)	377
Fsp4HI	GCNGC	2 cut(s)	93, 96
GluI	GCNGC	2 cut(s)	93, 96
Hin1II	CATG	3 cut(s)	113, 298, 352
HinfI	GANTC	1 cut(s)	179
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188I	TCNGA	1 cut(s)	130
Hpy8I	GTNNAC	1 cut(s)	121
HpyAV	CCTTC	3 cut(s)	40, 255, 266
HpyCH4V	TGCA	4 cut(s)	20, 43, 98, 263
Hsp92II	CATG	3 cut(s)	113, 298, 352
Kzo9I	GATC	2 cut(s)	77, 209
LpnPI	CCDG	5 cut(s)	6, 75, 88, 119, 321
Lsp1109I	GCAGC	2 cut(s)	82, 104
MalI	GATC	2 cut(s)	79, 211
MboI	GATC	2 cut(s)	77, 209
MboII	GAAGA	1 cut(s)	77
MfeI	CAATTG	2 cut(s)	138, 264
MflI	RGATCY	1 cut(s)	77
MluCI	AATT	5 cut(s)	38, 138, 264, 278, 381
MlyI	GAGTC	1 cut(s)	188
MnlI	CCTC	1 cut(s)	374
MroXI	GAANNNNTTC	1 cut(s)	321
MseI	TTAA	1 cut(s)	215
MslI	CAYNNNNRTG	1 cut(s)	293
MspA1I	CMGCKG	1 cut(s)	95
MunI	CAATTG	2 cut(s)	138, 264
NcoI	CCATGG	1 cut(s)	294
NdeI	CATATG	1 cut(s)	150
NdeII	GATC	2 cut(s)	77, 209
NlaIII	CATG	3 cut(s)	113, 298, 352
NlaIV	GGNNCC	1 cut(s)	285
NspI	RCATGY	1 cut(s)	113
PaeI	GCATGC	1 cut(s)	113
PdmI	GAANNNNTTC	1 cut(s)	321
PkrI	GCNGC	2 cut(s)	94, 97
PleI	GAGTC	1 cut(s)	187
PpsI	GAGTC	1 cut(s)	187
PshAI	GACNNNNGTC	1 cut(s)	140
PspN4I	GGNNCC	1 cut(s)	285
PspPI	GGNCC	1 cut(s)	283
PstI	CTGCAG	1 cut(s)	100
PstNI	CAGNNNCTG	1 cut(s)	314
PsuI	RGATCY	1 cut(s)	77
PvuII	CAGCTG	1 cut(s)	95
RsaI	GTAC	1 cut(s)	355
RsaNI	GTAC	1 cut(s)	354
RseI	CAYNNNNRTG	1 cut(s)	293
SaqAI	TTAA	1 cut(s)	215
SatI	GCNGC	2 cut(s)	93, 96
Sau3AI	GATC	2 cut(s)	77, 209
Sau96I	GGNCC	1 cut(s)	283
SchI	GAGTC	1 cut(s)	188
SetI	ASST	4 cut(s)	97, 174, 232, 313
SfcI	CTRYAG	1 cut(s)	96
SinI	GGWCC	1 cut(s)	283
SmiMI	CAYNNNNRTG	1 cut(s)	293
SmlI	CTYRAG	1 cut(s)	114
SmoI	CTYRAG	1 cut(s)	114
SphI	GCATGC	1 cut(s)	113
Sse9I	AATT	5 cut(s)	38, 138, 264, 278, 381
StyI	CCWWGG	2 cut(s)	205, 294
TasI	AATT	5 cut(s)	38, 138, 264, 278, 381
Tru1I	TTAA	1 cut(s)	215
Tru9I	TTAA	1 cut(s)	215
TseI	GCWGC	2 cut(s)	92, 95
TspDTI	ATGAA	2 cut(s)	237, 379
VpaK11BI	GGWCC	1 cut(s)	283
XceI	RCATGY	1 cut(s)	113
XmiI	GTMKAC	1 cut(s)	120
XmnI	GAANNNNTTC	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.