Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018406.1

Orthogroup ID

OG0005556

Physical Location & Seq

Genomic Coordinates Forward (+)

3338 .. 4131

Gene Structure 794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018406.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

atgcttcggtggcagcaggctggaacgcagggctgcagggagggggaagcaggggctgctgtgcaaggttgcaaacgcactggcgcgcgggctgcagcgaaggctcggctagctcgggctaggggctgctttgtgaatgagttttggttttctgttttgtggttagagtcgattgagaaatctagaaccttctctcctatttctactcctagtttgataaggcacactaaatcgatattccttcaacacttatcactcagccctagcggcgagaccttcaaggtcgtaacgatagaagctgccactaaactagagattgccaagcgcgacctcatggagttgcgtgcacgggctgaggccgagcgcttagcatgtgtgaaagcccacagcaccttcattccatcctcgatagccgaggcaacacttggaactctcacatgccctaagccaaagaacgtgagcacaggcccatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

157

Amino Acids

17.1

Weight (kDa)

9.9

Isoelectric Point (pI)

43.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0342681 RchiOBHm_Chr4g0385031
rosa_laevigata	RLG00000008562 RLG00000014249 RLG00000030660
rosa_multiflora	Rmu_sc0000230.1_g000007 Rmu_sc0003052.1_g000011 Rmu_sc0006159.1_g000013 Rmu_sc0008336.1_g000014 Rmu_sc0010676.1_g000001 Rmu_sc0018406.1_g000002
rosa_roxburghii	Rroxscaffold_2G00116070 Rroxscaffold_7G00190900
rosa_rugosa	Rorug02G0507600
rosa_samantha	Rh2DG203900 Rh3DG272000 Rh4AG220600 Rh4CG002500 Rh4CG169000 Rh5AG255100 Rh5BG250800 Rh6BG140300 Rh6DG123700 Rh7AG342200 Rh7CG359800 Rh7CG474900
rosa_wichuraiana	Rw2G004640 Rw4G016300 Rw7G002500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	86, 88, 327
AciI	CCGC	2 cut(s)	88, 267
AfeI	AGCGCT	1 cut(s)	365
AgsI	TTSAA	2 cut(s)	245, 280
AloI	GAACNNNNNNTCC	2 cut(s)	178, 210
AluBI	AGCT	2 cut(s)	113, 299
AluI	AGCT	2 cut(s)	113, 299
Alw21I	GWGCWC	2 cut(s)	349, 464
Alw26I	GTCTC	1 cut(s)	266
Alw44I	GTGCAC	1 cut(s)	345
AlwNI	CAGNNNCTG	1 cut(s)	56
Ama87I	CYCGRG	1 cut(s)	114
Aor51HI	AGCGCT	1 cut(s)	365
AoxI	GGCC	2 cut(s)	357, 466
ApaLI	GTGCAC	1 cut(s)	345
ApeKI	GCWGC	7 cut(s)	13, 33, 56, 92, 95, 126, 299
AspLEI	GCGC	4 cut(s)	86, 88, 327, 366
AspS9I	GGNCC	1 cut(s)	467
AsuNHI	GCTAGC	1 cut(s)	109
AvaI	CYCGRG	1 cut(s)	114
BaeGI	GKGCMC	1 cut(s)	349
Bbv12I	GWGCWC	2 cut(s)	349, 464
BbvCI	CCTCAGC	1 cut(s)	354
BbvI	GCAGC	7 cut(s)	20, 25, 43, 79, 107, 113, 286
BccI	CCATC	1 cut(s)	409
BcoDI	GTCTC	1 cut(s)	266
BfaI	CTAG	6 cut(s)	110, 120, 183, 210, 264, 311
BfmI	CTRYAG	2 cut(s)	34, 93
BfoI	RGCGCY	1 cut(s)	367
BglI	GCCNNNNNGGC	1 cut(s)	267
BisI	GCNGC	8 cut(s)	14, 34, 57, 93, 96, 127, 268, 300
BlpI	GCTNAGC	1 cut(s)	367
BlsI	GCNGC	8 cut(s)	15, 35, 58, 94, 97, 128, 269, 301
BmeT110I	CYCGRG	1 cut(s)	114
BmgT120I	GGNCC	1 cut(s)	467
BmtI	GCTAGC	1 cut(s)	113
Bpu10I	CCTNAGC	2 cut(s)	354, 444
Bpu1102I	GCTNAGC	1 cut(s)	367
Bsa29I	ATCGAT	1 cut(s)	233
BsaI	GGTCTC	1 cut(s)	266
BsaJI	CCNNGG	1 cut(s)	414
BsaXI	ACNNNNNCTCC	2 cut(s)	178, 208
Bse1I	ACTGG	1 cut(s)	85
BseCI	ATCGAT	1 cut(s)	233
BseDI	CCNNGG	1 cut(s)	414
BseGI	GGATG	1 cut(s)	401
BseMII	CTCAG	2 cut(s)	271, 345
BseNI	ACTGG	1 cut(s)	85
BsePI	GCGCGC	1 cut(s)	84
BseSI	GKGCMC	1 cut(s)	349
BseXI	GCAGC	7 cut(s)	20, 25, 43, 79, 107, 113, 286
Bsh1236I	CGCG	3 cut(s)	86, 88, 327
BshFI	GGCC	2 cut(s)	359, 468
BshVI	ATCGAT	1 cut(s)	233
BsiHKAI	GWGCWC	2 cut(s)	349, 464
BsiHKCI	CYCGRG	1 cut(s)	114
BsmAI	GTCTC	1 cut(s)	266
BsnI	GGCC	2 cut(s)	359, 468
Bso31I	GGTCTC	1 cut(s)	266
BsoBI	CYCGRG	1 cut(s)	114
Bsp1286I	GDGCHC	2 cut(s)	349, 464
Bsp1720I	GCTNAGC	1 cut(s)	367
BspACI	CCGC	2 cut(s)	88, 267
BspANI	GGCC	2 cut(s)	359, 468
BspCNI	CTCAG	2 cut(s)	270, 346
BspDI	ATCGAT	1 cut(s)	233
BspFNI	CGCG	3 cut(s)	86, 88, 327
BspMAI	CTGCAG	2 cut(s)	38, 97
BspOI	GCTAGC	1 cut(s)	113
BspTNI	GGTCTC	1 cut(s)	266
BsrI	ACTGG	1 cut(s)	85
BssECI	CCNNGG	1 cut(s)	414
BssHII	GCGCGC	1 cut(s)	84
BstAPI	GCANNNNNTGC	1 cut(s)	56
BstC8I	GCNNGC	5 cut(s)	18, 86, 90, 111, 345
BstDEI	CTNAG	4 cut(s)	257, 354, 367, 444
BstF5I	GGATG	1 cut(s)	401
BstFNI	CGCG	3 cut(s)	86, 88, 327
BstH2I	RGCGCY	1 cut(s)	367
BstHHI	GCGC	4 cut(s)	86, 88, 327, 366
BstMAI	GTCTC	1 cut(s)	266
BstMWI	GCNNNNNNNGC	6 cut(s)	10, 56, 92, 101, 110, 267
BstNSI	RCATGY	2 cut(s)	375, 441
BstSFI	CTRYAG	2 cut(s)	34, 93
BstSLI	GKGCMC	1 cut(s)	349
BstUI	CGCG	3 cut(s)	86, 88, 327
BstV1I	GCAGC	7 cut(s)	20, 25, 43, 79, 107, 113, 286
Bsu15I	ATCGAT	1 cut(s)	233
BsuRI	GGCC	2 cut(s)	359, 468
BsuTUI	ATCGAT	1 cut(s)	233
BtsCI	GGATG	1 cut(s)	401
BtsIMutI	CAGTG	1 cut(s)	78
Cac8I	GCNNGC	5 cut(s)	18, 86, 90, 111, 345
CaiI	CAGNNNCTG	1 cut(s)	56
CfoI	GCGC	4 cut(s)	86, 88, 327, 366
Cfr13I	GGNCC	1 cut(s)	467
ClaI	ATCGAT	1 cut(s)	233
CviAII	CATG	3 cut(s)	334, 372, 438
DdeI	CTNAG	4 cut(s)	257, 354, 367, 444
Eco31I	GGTCTC	1 cut(s)	266
Eco47III	AGCGCT	1 cut(s)	365
Eco88I	CYCGRG	1 cut(s)	114
FaeI	CATG	3 cut(s)	337, 375, 441
FaiI	YATR	4 cut(s)	335, 373, 439, 472
FatI	CATG	3 cut(s)	333, 371, 437
FauI	CCCGC	1 cut(s)	81
Fnu4HI	GCNGC	8 cut(s)	14, 34, 57, 93, 96, 127, 268, 300
FokI	GGATG	1 cut(s)	388
Fsp4HI	GCNGC	8 cut(s)	14, 34, 57, 93, 96, 127, 268, 300
FspBI	CTAG	6 cut(s)	110, 120, 183, 210, 264, 311
GlaI	GCGC	4 cut(s)	85, 87, 326, 365
GluI	GCNGC	8 cut(s)	14, 34, 57, 93, 96, 127, 268, 300
HaeII	RGCGCY	1 cut(s)	367
HaeIII	GGCC	2 cut(s)	359, 468
HhaI	GCGC	4 cut(s)	86, 88, 327, 366
Hin1II	CATG	3 cut(s)	337, 375, 441
Hin6I	GCGC	4 cut(s)	84, 86, 325, 364
HinP1I	GCGC	4 cut(s)	84, 86, 325, 364
HinfI	GANTC	1 cut(s)	167
Hpy166II	GTNNAC	1 cut(s)	347
Hpy188III	TCNNGA	1 cut(s)	183
Hpy8I	GTNNAC	1 cut(s)	347
HpyAV	CCTTC	5 cut(s)	94, 199, 251, 286, 403
HpyCH4IV	ACGT	1 cut(s)	456
HpyCH4V	TGCA	5 cut(s)	36, 64, 72, 95, 347
HpyF10VI	GCNNNNNNNGC	6 cut(s)	10, 56, 92, 101, 110, 267
HpyF3I	CTNAG	4 cut(s)	257, 354, 367, 444
HpySE526I	ACGT	1 cut(s)	456
Hsp92II	CATG	3 cut(s)	337, 375, 441
HspAI	GCGC	4 cut(s)	84, 86, 325, 364
LpnPI	CCDG	7 cut(s)	2, 6, 14, 22, 36, 66, 450
Lsp1109I	GCAGC	7 cut(s)	20, 25, 43, 79, 107, 113, 286
MaeI	CTAG	6 cut(s)	110, 120, 183, 210, 264, 311
MaeII	ACGT	1 cut(s)	456
MaeIII	GTNAC	1 cut(s)	286
MhlI	GDGCHC	2 cut(s)	349, 464
MlyI	GAGTC	1 cut(s)	176
MnlI	CCTC	5 cut(s)	34, 341, 349, 409, 415
MvnI	CGCG	3 cut(s)	86, 88, 327
MwoI	GCNNNNNNNGC	6 cut(s)	10, 56, 92, 101, 110, 267
NheI	GCTAGC	1 cut(s)	109
NlaIII	CATG	3 cut(s)	337, 375, 441
NmeAIII	GCCGAG	3 cut(s)	85, 385, 439
NspI	RCATGY	2 cut(s)	375, 441
PauI	GCGCGC	1 cut(s)	84
PkrI	GCNGC	8 cut(s)	15, 35, 58, 94, 97, 128, 269, 301
PleI	GAGTC	1 cut(s)	175
PpsI	GAGTC	1 cut(s)	175
PspPI	GGNCC	1 cut(s)	467
PstI	CTGCAG	2 cut(s)	38, 97
PstNI	CAGNNNCTG	1 cut(s)	56
PteI	GCGCGC	1 cut(s)	84
SatI	GCNGC	8 cut(s)	14, 34, 57, 93, 96, 127, 268, 300
Sau96I	GGNCC	1 cut(s)	467
SchI	GAGTC	1 cut(s)	176
SduI	GDGCHC	2 cut(s)	349, 464
SetI	ASST	9 cut(s)	70, 115, 191, 278, 285, 301, 333, 395, 459
SfcI	CTRYAG	2 cut(s)	34, 93
SsiI	CCGC	2 cut(s)	88, 267
SspMI	CTAG	6 cut(s)	110, 120, 183, 210, 264, 311
TaiI	ACGT	1 cut(s)	459
TaqI	TCGA	3 cut(s)	170, 233, 407
TauI	GCSGC	1 cut(s)	270
TscAI	CASTG	1 cut(s)	85
TseI	GCWGC	7 cut(s)	13, 33, 56, 92, 95, 126, 299
TspDTI	ATGAA	1 cut(s)	385
TspRI	CASTG	1 cut(s)	85
VneI	GTGCAC	1 cut(s)	345
XbaI	TCTAGA	1 cut(s)	182
XceI	RCATGY	2 cut(s)	375, 441
XspI	CTAG	6 cut(s)	110, 120, 183, 210, 264, 311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.